Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0017800

Physical Location & Seq

Genomic Coordinates Reverse (-)

65549448 .. 65551455

Gene Structure 2008 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015399

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGTGTATTCAGATGAGACATTCTGATAGAATAGACGAGGCGGAGAAGCGTCTGCAAAGCCCGGGGTACGAGCAGGTTTTGGAGAGAGAGGATTGGAAATTGGAGGCTGGTAAAAAGTACTACTTCACCAGGAACTACTCCACCATTGTGGCTTTTGCAATCGGTAAAAAATTTGTTGCCGGAAATGGATTCCATATAGTTGGTGCTCATACTGATAGTCCTTGTCTCAAATTGAAGTCTGTTTCCAAGGTAGCTAAGGGTGGGTACTTGGAAGTAGGAGTCCAAACATATGGAGGTGGCTTGTGGCAGACCTGGTACAACCGTGACTTGACAATTGCAGGAAGGGTGATAGTAAGAGAAGAGAAAGATGGTGTTGTTTCTTACTCACATAGACTTGTCCGGATTGAGGAGCCCAATTCCTACTCTGGGATGTTAGAGAGGCGTTTAAGGCTTATGGAGAGCTTCCAAGGAACACGTCTTAACGACGATATTACTGGGGGTCTTGAAGATAAAAATGAAGGTGGTGCTAATGACTACATCGAGTTTGAGGATGAAGATATTGATAAGATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004177 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006508 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008235 GO:0008237 GO:0008238 GO:0009987 GO:0016787 GO:0019538 GO:0034641 GO:0042802 GO:0043170 GO:0043603 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0070006 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M18

Protein Analysis

191

Amino Acids

21.68

Weight (kDa)

5.66

Isoelectric Point (pI)

35.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M18	PF02127	11 - 138	7.3e-42	Aminopeptidase I zinc metalloprotease (M18)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0017800)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0425041 RchiOBHm_Chr7g0233781
rosa_laevigata	RLG00000000804 RLG00000015399
rosa_roxburghii	Rroxscaffold_2G00092620
rosa_samantha	Rh4CG034400 Rh4DG259400 Rh5AG471200 Rh6AG020500 Rh6BG016300 Rh7CG458700
rosa_wichuraiana	Rw4G022290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	64
AccIII	TCCGGA	1 cut(s)	399
AciI	CCGC	1 cut(s)	41
AcsI	RAATTY	1 cut(s)	170
AfaI	GTAC	4 cut(s)	68, 119, 266, 317
AfiI	CCNNNNNNNGG	2 cut(s)	406, 426
AflIII	ACRYGT	1 cut(s)	473
AgsI	TTSAA	2 cut(s)	235, 506
AjiI	CACGTC	1 cut(s)	476
AjnI	CCWGG	2 cut(s)	128, 311
AleI	CACNNNNGTG	1 cut(s)	146
AluBI	AGCT	2 cut(s)	254, 462
AluI	AGCT	2 cut(s)	254, 462
Alw21I	GWGCWC	1 cut(s)	208
Alw26I	GTCTC	2 cut(s)	10, 230
Ama87I	CYCGRG	1 cut(s)	61
Aor13HI	TCCGGA	1 cut(s)	399
ApoI	RAATTY	1 cut(s)	170
AsuC2I	CCSGG	2 cut(s)	62, 63
AsuHPI	GGTGA	2 cut(s)	118, 358
AvaI	CYCGRG	1 cut(s)	61
BaeI	ACNNNNGTAYC	2 cut(s)	307, 340
BanII	GRGCYC	1 cut(s)	414
Bbv12I	GWGCWC	1 cut(s)	208
BccI	CCATC	1 cut(s)	362
BciT130I	CCWGG	2 cut(s)	130, 313
BcnI	CCSGG	2 cut(s)	62, 63
BcoDI	GTCTC	2 cut(s)	10, 230
BfuAI	ACCTGC	1 cut(s)	64
BmcAI	AGTACT	1 cut(s)	119
Bme1390I	CCNGG	4 cut(s)	62, 63, 130, 313
BmeT110I	CYCGRG	1 cut(s)	61
BmgBI	CACGTC	1 cut(s)	476
BmiI	GGNNCC	1 cut(s)	411
BmrFI	CCNGG	4 cut(s)	62, 63, 130, 313
BmrI	ACTGGG	1 cut(s)	504
BmuI	ACTGGG	1 cut(s)	504
Bpu10I	CCTNAGC	1 cut(s)	255
BpuMI	CCSGG	2 cut(s)	62, 63
BsaJI	CCNNGG	4 cut(s)	61, 62, 246, 466
BsaWI	WCCGGW	1 cut(s)	399
Bsc4I	CCNNNNNNNGG	2 cut(s)	406, 426
Bse1I	ACTGG	1 cut(s)	499
BseAI	TCCGGA	1 cut(s)	399
BseBI	CCWGG	2 cut(s)	130, 313
BseDI	CCNNGG	4 cut(s)	61, 62, 246, 466
BseGI	GGATG	2 cut(s)	435, 556
BseLI	CCNNNNNNNGG	2 cut(s)	406, 426
BseNI	ACTGG	1 cut(s)	499
BseRI	GAGGAG	1 cut(s)	422
BsiHKAI	GWGCWC	1 cut(s)	208
BsiHKCI	CYCGRG	1 cut(s)	61
BsiSI	CCGG	3 cut(s)	62, 180, 400
BslI	CCNNNNNNNGG	2 cut(s)	406, 426
BsmAI	GTCTC	2 cut(s)	10, 230
BsoBI	CYCGRG	1 cut(s)	61
Bsp1286I	GDGCHC	2 cut(s)	208, 414
Bsp13I	TCCGGA	1 cut(s)	399
BspACI	CCGC	1 cut(s)	41
BspEI	TCCGGA	1 cut(s)	399
BspLI	GGNNCC	1 cut(s)	411
BspMI	ACCTGC	1 cut(s)	64
BsrI	ACTGG	1 cut(s)	499
BssECI	CCNNGG	4 cut(s)	61, 62, 246, 466
BssT1I	CCWWGG	2 cut(s)	246, 466
Bst2UI	CCWGG	2 cut(s)	130, 313
Bst4CI	ACNGT	1 cut(s)	323
Bst6I	CTCTTC	1 cut(s)	354
BstDEI	CTNAG	1 cut(s)	255
BstF5I	GGATG	2 cut(s)	435, 556
BstMAI	GTCTC	2 cut(s)	10, 230
BstMWI	GCNNNNNNNGC	1 cut(s)	448
BstNI	CCWGG	2 cut(s)	130, 313
BstSCI	CCNGG	4 cut(s)	60, 61, 128, 311
BstXI	CCANNNNNNTGG	3 cut(s)	148, 200, 290
BtrI	CACGTC	1 cut(s)	476
BtsCI	GGATG	2 cut(s)	435, 556
BveI	ACCTGC	1 cut(s)	64
Cfr9I	CCCGGG	1 cut(s)	61
CseI	GACGC	1 cut(s)	38
CsiI	ACCWGGT	1 cut(s)	311
Csp6I	GTAC	4 cut(s)	67, 118, 265, 316
CviJI	RGCY	8 cut(s)	60, 107, 152, 254, 300, 412, 451, 462
CviKI_1	RGCY	8 cut(s)	60, 107, 152, 254, 300, 412, 451, 462
CviQI	GTAC	4 cut(s)	67, 118, 265, 316
DdeI	CTNAG	1 cut(s)	255
Eam1104I	CTCTTC	1 cut(s)	354
EarI	CTCTTC	1 cut(s)	354
EciI	GGCGGA	1 cut(s)	56
Eco130I	CCWWGG	2 cut(s)	246, 466
Eco24I	GRGCYC	1 cut(s)	414
Eco88I	CYCGRG	1 cut(s)	61
EcoRII	CCWGG	2 cut(s)	128, 311
EcoT14I	CCWWGG	2 cut(s)	246, 466
EcoT38I	GRGCYC	1 cut(s)	414
ErhI	CCWWGG	2 cut(s)	246, 466
FaiI	YATR	7 cut(s)	195, 197, 210, 289, 291, 390, 455
FalI	AAGNNNNNCTT	2 cut(s)	107, 139
FauNDI	CATATG	1 cut(s)	289
FokI	GGATG	2 cut(s)	442, 563
FriOI	GRGCYC	1 cut(s)	414
HapII	CCGG	3 cut(s)	62, 180, 400
HgaI	GACGC	1 cut(s)	38
HinfI	GANTC	2 cut(s)	189, 279
HpaII	CCGG	3 cut(s)	62, 180, 400
HphI	GGTGA	2 cut(s)	118, 358
Hpy188I	TCNGA	2 cut(s)	12, 25
Hpy188III	TCNNGA	2 cut(s)	400, 503
Hpy99I	CGWCG	1 cut(s)	488
HpyAV	CCTTC	2 cut(s)	336, 512
HpyCH4III	ACNGT	1 cut(s)	323
HpyCH4IV	ACGT	1 cut(s)	475
HpyCH4V	TGCA	3 cut(s)	55, 158, 338
HpyF10VI	GCNNNNNNNGC	1 cut(s)	448
HpyF3I	CTNAG	1 cut(s)	255
HpySE526I	ACGT	1 cut(s)	475
Kpn2I	TCCGGA	1 cut(s)	399
LmnI	GCTCC	1 cut(s)	409
MabI	ACCWGGT	1 cut(s)	311
MaeII	ACGT	1 cut(s)	475
MaeIII	GTNAC	1 cut(s)	323
MboII	GAAGA	3 cut(s)	371, 518, 566
MfeI	CAATTG	1 cut(s)	333
MhlI	GDGCHC	2 cut(s)	208, 414
MluCI	AATT	5 cut(s)	98, 170, 230, 333, 415
MlyI	GAGTC	1 cut(s)	288
MnlI	CCTC	7 cut(s)	31, 82, 97, 287, 400, 432, 541
MroI	TCCGGA	1 cut(s)	399
MseI	TTAA	3 cut(s)	446, 480, 571
MslI	CAYNNNNRTG	1 cut(s)	146
MspI	CCGG	3 cut(s)	62, 180, 400
MspR9I	CCNGG	4 cut(s)	62, 63, 130, 313
MunI	CAATTG	1 cut(s)	333
MvaI	CCWGG	2 cut(s)	130, 313
MwoI	GCNNNNNNNGC	1 cut(s)	448
NciI	CCSGG	2 cut(s)	62, 63
NdeI	CATATG	1 cut(s)	289
NlaIV	GGNNCC	1 cut(s)	411
NmuCI	GTSAC	1 cut(s)	323
OliI	CACNNNNGTG	1 cut(s)	146
PfeI	GAWTC	1 cut(s)	189
PleI	GAGTC	1 cut(s)	287
PpsI	GAGTC	1 cut(s)	287
Psp6I	CCWGG	2 cut(s)	128, 311
PspGI	CCWGG	2 cut(s)	128, 311
PspN4I	GGNNCC	1 cut(s)	411
RsaI	GTAC	4 cut(s)	68, 119, 266, 317
RsaNI	GTAC	4 cut(s)	67, 118, 265, 316
RseI	CAYNNNNRTG	1 cut(s)	146
SaqAI	TTAA	3 cut(s)	446, 480, 571
ScaI	AGTACT	1 cut(s)	119
SchI	GAGTC	1 cut(s)	288
ScrFI	CCNGG	4 cut(s)	62, 63, 130, 313
SduI	GDGCHC	2 cut(s)	208, 414
SetI	ASST	8 cut(s)	78, 252, 256, 298, 314, 464, 478, 523
SexAI	ACCWGGT	1 cut(s)	311
SmaI	CCCGGG	1 cut(s)	63
SmiMI	CAYNNNNRTG	1 cut(s)	146
Sse9I	AATT	5 cut(s)	98, 170, 230, 333, 415
SsiI	CCGC	1 cut(s)	41
StyD4I	CCNGG	4 cut(s)	60, 61, 128, 311
StyI	CCWWGG	2 cut(s)	246, 466
TaaI	ACNGT	1 cut(s)	323
TaiI	ACGT	1 cut(s)	478
TaqI	TCGA	1 cut(s)	540
TasI	AATT	5 cut(s)	98, 170, 230, 333, 415
TatI	WGTACW	1 cut(s)	117
TfiI	GAWTC	1 cut(s)	189
Tru1I	TTAA	3 cut(s)	446, 480, 571
Tru9I	TTAA	3 cut(s)	446, 480, 571
TseFI	GTSAC	1 cut(s)	323
Tsp45I	GTSAC	1 cut(s)	323
TspDTI	ATGAA	2 cut(s)	531, 567
TspMI	CCCGGG	1 cut(s)	61
XapI	RAATTY	1 cut(s)	170
XmaI	CCCGGG	1 cut(s)	61
ZrmI	AGTACT	1 cut(s)	119

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.