Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0017800

Physical Location & Seq

Genomic Coordinates Forward (+)

5748542 .. 5752110

Gene Structure 3569 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000000804

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGGAAAAGTCGATCTATGACCCGGTAGACGAGGACGAGTACGACGCGATCATCGCCAATCGCCGCGAGGAGTTCGGGGACTTCATCGAGGACGACGACGGCCTAGGGTACTGCGACGACGGCGAGGAAGAGGACTGGTCCCTCCGCGGGCTTCCGACGTCACGAGGCGAAGAAGCTTCTGCAAAGCGCGGGGTAGCTAAGGGTGGGTACTTGGAAGTGGGAGTCCAAACATATGGAGGTGGCTTGTGGCATACCTGGTTCGACCGTGACTTGACAATTGCAGGAAGGGTGATACTAAGAGAAGAGAAAGATGGTGTTGTTTCTTACTCACATAGACTTGTCCGGATTGAGGAGCCCATCATGTGGATTCCTACTCTGGCAATTCACCTGGACAGGGATGTTAGAGAGGCGTTTAAGGTGAATGCAGAGTCACCTTCTTCTTGTCTTGGGAACAGCAGTCAAGGTAATCTTGTAATATATTCAATTTATCGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004177 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006508 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008235 GO:0008237 GO:0008238 GO:0009987 GO:0016787 GO:0019538 GO:0034641 GO:0042802 GO:0043170 GO:0043603 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0070006 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M18

Protein Analysis

165

Amino Acids

18.54

Weight (kDa)

4.48

Isoelectric Point (pI)

54.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DNA_pol_alpha_N	PF12254	2 - 46	6.7e-14	DNA polymerase alpha subunit p180 N terminal
Peptidase_M18	PF02127	67 - 145	5.7e-26	Aminopeptidase I zinc metalloprotease (M18)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017800)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0425041 RchiOBHm_Chr7g0233781
rosa_laevigata	RLG00000000804 RLG00000015399
rosa_roxburghii	Rroxscaffold_2G00092620
rosa_samantha	Rh4CG034400 Rh4DG259400 Rh5AG471200 Rh6AG020500 Rh6BG016300 Rh7CG458700
rosa_wichuraiana	Rw4G022290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	161
AccB7I	CCANNNNNTGG	1 cut(s)	363
AccI	GTMKAC	1 cut(s)	27
AccII	CGCG	4 cut(s)	47, 66, 147, 189
AccIII	TCCGGA	1 cut(s)	342
AciI	CCGC	4 cut(s)	64, 145, 147, 189
AcyI	GRCGYC	1 cut(s)	158
AfaI	GTAC	3 cut(s)	41, 110, 209
AfiI	CCNNNNNNNGG	4 cut(s)	147, 349, 363, 394
AgsI	TTSAA	1 cut(s)	483
AjnI	CCWGG	2 cut(s)	254, 387
AluBI	AGCT	2 cut(s)	176, 197
AluI	AGCT	2 cut(s)	176, 197
Aor13HI	TCCGGA	1 cut(s)	342
AoxI	GGCC	1 cut(s)	100
AspA2I	CCTAGG	1 cut(s)	103
AspLEI	GCGC	1 cut(s)	189
AspS9I	GGNCC	1 cut(s)	138
AsuC2I	CCSGG	1 cut(s)	23
AsuHPI	GGTGA	4 cut(s)	301, 377, 423, 430
AvaII	GGWCC	1 cut(s)	138
AvrII	CCTAGG	1 cut(s)	103
BanII	GRGCYC	1 cut(s)	357
BauI	CACGAG	1 cut(s)	162
BccI	CCATC	2 cut(s)	305, 365
BceAI	ACGGC	2 cut(s)	115, 136
BciT130I	CCWGG	2 cut(s)	256, 389
BcnI	CCSGG	1 cut(s)	23
BfaI	CTAG	1 cut(s)	104
BisI	GCNGC	1 cut(s)	64
BlnI	CCTAGG	1 cut(s)	103
BlsI	GCNGC	1 cut(s)	65
Bme1390I	CCNGG	3 cut(s)	23, 256, 389
Bme18I	GGWCC	1 cut(s)	138
BmgT120I	GGNCC	1 cut(s)	138
BmiI	GGNNCC	2 cut(s)	140, 354
BmrFI	CCNGG	3 cut(s)	23, 256, 389
Bpu10I	CCTNAGC	1 cut(s)	198
BpuMI	CCSGG	1 cut(s)	23
BsaHI	GRCGYC	1 cut(s)	158
BsaJI	CCNNGG	2 cut(s)	103, 145
BsaWI	WCCGGW	1 cut(s)	342
Bsc4I	CCNNNNNNNGG	4 cut(s)	147, 349, 363, 394
Bse1I	ACTGG	1 cut(s)	140
BseAI	TCCGGA	1 cut(s)	342
BseBI	CCWGG	2 cut(s)	256, 389
BseDI	CCNNGG	2 cut(s)	103, 145
BseGI	GGATG	1 cut(s)	403
BseLI	CCNNNNNNNGG	4 cut(s)	147, 349, 363, 394
BseNI	ACTGG	1 cut(s)	140
BseRI	GAGGAG	2 cut(s)	83, 365
Bsh1236I	CGCG	4 cut(s)	47, 66, 147, 189
Bsh1285I	CGRYCG	1 cut(s)	265
BshFI	GGCC	1 cut(s)	102
BsiEI	CGRYCG	1 cut(s)	265
BsiSI	CCGG	2 cut(s)	23, 343
BslFI	GGGAC	2 cut(s)	92, 124
BslI	CCNNNNNNNGG	4 cut(s)	147, 349, 363, 394
BsmFI	GGGAC	2 cut(s)	92, 124
BsmI	GAATGC	1 cut(s)	427
BsnI	GGCC	1 cut(s)	102
Bsp1286I	GDGCHC	1 cut(s)	357
Bsp13I	TCCGGA	1 cut(s)	342
Bsp143I	GATC	2 cut(s)	12, 48
BspACI	CCGC	4 cut(s)	64, 145, 147, 189
BspANI	GGCC	1 cut(s)	102
BspEI	TCCGGA	1 cut(s)	342
BspFNI	CGCG	4 cut(s)	47, 66, 147, 189
BspLI	GGNNCC	2 cut(s)	140, 354
BsrI	ACTGG	1 cut(s)	140
BssECI	CCNNGG	2 cut(s)	103, 145
BssMI	GATC	2 cut(s)	12, 48
BssNI	GRCGYC	1 cut(s)	158
BssSI	CACGAG	1 cut(s)	162
BssT1I	CCWWGG	1 cut(s)	103
Bst2BI	CACGAG	1 cut(s)	162
Bst2UI	CCWGG	2 cut(s)	256, 389
Bst4CI	ACNGT	1 cut(s)	266
Bst6I	CTCTTC	2 cut(s)	123, 297
BstACI	GRCGYC	1 cut(s)	158
BstC8I	GCNNGC	1 cut(s)	149
BstDEI	CTNAG	2 cut(s)	198, 296
BstDSI	CCRYGG	1 cut(s)	145
BstF5I	GGATG	1 cut(s)	403
BstFNI	CGCG	4 cut(s)	47, 66, 147, 189
BstHHI	GCGC	1 cut(s)	189
BstKTI	GATC	2 cut(s)	15, 51
BstMBI	GATC	2 cut(s)	12, 48
BstMCI	CGRYCG	1 cut(s)	265
BstMWI	GCNNNNNNNGC	2 cut(s)	53, 120
BstNI	CCWGG	2 cut(s)	256, 389
BstSCI	CCNGG	3 cut(s)	21, 254, 387
BstUI	CGCG	4 cut(s)	47, 66, 147, 189
BstXI	CCANNNNNNTGG	1 cut(s)	233
BsuRI	GGCC	1 cut(s)	102
BtgI	CCRYGG	1 cut(s)	145
BtgZI	GCGATG	1 cut(s)	37
BtsCI	GGATG	1 cut(s)	403
Cac8I	GCNNGC	1 cut(s)	149
CfoI	GCGC	1 cut(s)	189
Cfr13I	GGNCC	1 cut(s)	138
Cfr42I	CCGCGG	1 cut(s)	148
CseI	GACGC	1 cut(s)	53
CsiI	ACCWGGT	1 cut(s)	254
Csp6I	GTAC	3 cut(s)	40, 109, 208
CviAII	CATG	1 cut(s)	361
CviJI	RGCY	6 cut(s)	102, 151, 176, 197, 243, 355
CviKI_1	RGCY	6 cut(s)	102, 151, 176, 197, 243, 355
CviQI	GTAC	3 cut(s)	40, 109, 208
DdeI	CTNAG	2 cut(s)	198, 296
DpnI	GATC	2 cut(s)	14, 50
DpnII	GATC	2 cut(s)	12, 48
Eam1104I	CTCTTC	2 cut(s)	123, 297
EarI	CTCTTC	2 cut(s)	123, 297
Eco130I	CCWWGG	1 cut(s)	103
Eco24I	GRGCYC	1 cut(s)	357
Eco47I	GGWCC	1 cut(s)	138
EcoRII	CCWGG	2 cut(s)	254, 387
EcoT14I	CCWWGG	1 cut(s)	103
EcoT38I	GRGCYC	1 cut(s)	357
ErhI	CCWWGG	1 cut(s)	103
FaeI	CATG	1 cut(s)	364
FaiI	YATR	7 cut(s)	18, 232, 234, 252, 333, 362, 478
FalI	AAGNNNNNCTT	2 cut(s)	453, 485
FaqI	GGGAC	2 cut(s)	92, 124
FatI	CATG	1 cut(s)	360
FauI	CCCGC	2 cut(s)	140, 182
FauNDI	CATATG	1 cut(s)	232
FblI	GTMKAC	1 cut(s)	27
Fnu4HI	GCNGC	1 cut(s)	64
FokI	GGATG	1 cut(s)	410
FriOI	GRGCYC	1 cut(s)	357
Fsp4HI	GCNGC	1 cut(s)	64
FspBI	CTAG	1 cut(s)	104
GlaI	GCGC	1 cut(s)	188
GluI	GCNGC	1 cut(s)	64
HaeIII	GGCC	1 cut(s)	102
HapII	CCGG	2 cut(s)	23, 343
HgaI	GACGC	1 cut(s)	53
HhaI	GCGC	1 cut(s)	189
Hin1I	GRCGYC	1 cut(s)	158
Hin1II	CATG	1 cut(s)	364
Hin6I	GCGC	1 cut(s)	187
HinP1I	GCGC	1 cut(s)	187
HindIII	AAGCTT	1 cut(s)	174
HinfI	GANTC	3 cut(s)	222, 367, 428
HpaII	CCGG	2 cut(s)	23, 343
HphI	GGTGA	4 cut(s)	301, 377, 423, 430
Hpy166II	GTNNAC	1 cut(s)	28
Hpy188I	TCNGA	1 cut(s)	156
Hpy188III	TCNNGA	2 cut(s)	162, 343
Hpy8I	GTNNAC	1 cut(s)	28
Hpy99I	CGWCG	6 cut(s)	47, 98, 101, 119, 122, 160
HpyAV	CCTTC	2 cut(s)	279, 444
HpyCH4III	ACNGT	1 cut(s)	266
HpyCH4IV	ACGT	1 cut(s)	158
HpyCH4V	TGCA	3 cut(s)	182, 281, 425
HpyF10VI	GCNNNNNNNGC	2 cut(s)	53, 120
HpyF3I	CTNAG	2 cut(s)	198, 296
HpySE526I	ACGT	1 cut(s)	158
Hsp92I	GRCGYC	1 cut(s)	158
Hsp92II	CATG	1 cut(s)	364
HspAI	GCGC	1 cut(s)	187
Kpn2I	TCCGGA	1 cut(s)	342
KspI	CCGCGG	1 cut(s)	148
Kzo9I	GATC	2 cut(s)	12, 48
LmnI	GCTCC	1 cut(s)	352
MabI	ACCWGGT	1 cut(s)	254
MaeI	CTAG	1 cut(s)	104
MaeII	ACGT	1 cut(s)	158
MaeIII	GTNAC	3 cut(s)	159, 266, 429
MalI	GATC	2 cut(s)	14, 50
MboI	GATC	2 cut(s)	12, 48
MboII	GAAGA	4 cut(s)	140, 182, 314, 429
MfeI	CAATTG	1 cut(s)	276
MhlI	GDGCHC	1 cut(s)	357
MluCI	AATT	3 cut(s)	276, 381, 483
MlyI	GAGTC	2 cut(s)	231, 437
MmeI	TCCRAC	1 cut(s)	179
MroI	TCCGGA	1 cut(s)	342
MseI	TTAA	1 cut(s)	414
MspA1I	CMGCKG	1 cut(s)	147
MspI	CCGG	2 cut(s)	23, 343
MspR9I	CCNGG	3 cut(s)	23, 256, 389
MunI	CAATTG	1 cut(s)	276
Mva1269I	GAATGC	1 cut(s)	427
MvaI	CCWGG	2 cut(s)	256, 389
MvnI	CGCG	4 cut(s)	47, 66, 147, 189
MwoI	GCNNNNNNNGC	2 cut(s)	53, 120
NciI	CCSGG	1 cut(s)	23
NdeI	CATATG	1 cut(s)	232
NdeII	GATC	2 cut(s)	12, 48
NlaIII	CATG	1 cut(s)	364
NlaIV	GGNNCC	2 cut(s)	140, 354
NmuCI	GTSAC	3 cut(s)	159, 266, 429
PcsI	WCGNNNNNNNCGW	1 cut(s)	93
PctI	GAATGC	1 cut(s)	427
PfeI	GAWTC	1 cut(s)	367
PflMI	CCANNNNNTGG	1 cut(s)	363
PkrI	GCNGC	1 cut(s)	65
PleI	GAGTC	2 cut(s)	230, 436
PpsI	GAGTC	2 cut(s)	230, 436
Psp6I	CCWGG	2 cut(s)	254, 387
PspGI	CCWGG	2 cut(s)	254, 387
PspN4I	GGNNCC	2 cut(s)	140, 354
PspPI	GGNCC	1 cut(s)	138
RsaI	GTAC	3 cut(s)	41, 110, 209
RsaNI	GTAC	3 cut(s)	40, 109, 208
SacII	CCGCGG	1 cut(s)	148
SaqAI	TTAA	1 cut(s)	414
SatI	GCNGC	1 cut(s)	64
Sau3AI	GATC	2 cut(s)	12, 48
Sau96I	GGNCC	1 cut(s)	138
SchI	GAGTC	2 cut(s)	231, 437
ScrFI	CCNGG	3 cut(s)	23, 256, 389
SduI	GDGCHC	1 cut(s)	357
SetI	ASST	9 cut(s)	161, 178, 199, 241, 257, 390, 420, 436, 466
SexAI	ACCWGGT	1 cut(s)	254
Sfr303I	CCGCGG	1 cut(s)	148
SgrBI	CCGCGG	1 cut(s)	148
SinI	GGWCC	1 cut(s)	138
Sse9I	AATT	3 cut(s)	276, 381, 483
SsiI	CCGC	4 cut(s)	64, 145, 147, 189
SspMI	CTAG	1 cut(s)	104
StyD4I	CCNGG	3 cut(s)	21, 254, 387
StyI	CCWWGG	1 cut(s)	103
TaaI	ACNGT	1 cut(s)	266
TaiI	ACGT	1 cut(s)	161
TaqI	TCGA	3 cut(s)	11, 87, 261
TasI	AATT	3 cut(s)	276, 381, 483
TauI	GCSGC	1 cut(s)	66
TfiI	GAWTC	1 cut(s)	367
Tru1I	TTAA	1 cut(s)	414
Tru9I	TTAA	1 cut(s)	414
TseFI	GTSAC	3 cut(s)	159, 266, 429
Tsp45I	GTSAC	3 cut(s)	159, 266, 429
TspDTI	ATGAA	1 cut(s)	73
Van91I	CCANNNNNTGG	1 cut(s)	363
VpaK11BI	GGWCC	1 cut(s)	138
XmaJI	CCTAGG	1 cut(s)	103
XmiI	GTMKAC	1 cut(s)	27
XspI	CTAG	1 cut(s)	104
ZraI	GACGTC	1 cut(s)	159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.