Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0017003

Physical Location & Seq

Genomic Coordinates Forward (+)

55800159 .. 55806836

Gene Structure 6678 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1275 bp

ATGTTTCATACTATATGTCAGTATTTCTTTGCTGCCCTCCCCGATGGTACTATTGTTACTCCTCATTCATATCCAAAAATCATCCGAAAACATAAATCCTTTCGAAAAGATCATAAACTGGGACCAAAGAGTAAATGGGCATGGGAATTCTTCTTGTCGTACCTTTTCTTCCCGCTAGTCGACATATTTGTAATTCTTCCACTCCCACAGGTAACCAAGTTAATTCTGAAAGTCGCTTTACTTCGATTTAAGTGCCAGAGTGTACTGGCTTTTGCCGTCATTCCAAAATTAAATGAGTCAAGGGTTCTTGATGCAACGCAGACACTCAAATCTGTGTTTCTCTTTCAATACGGGCTAAGGGTTATTCGAATCTGCTCCTTGTTGAAAAATGTTACAAGGGCTTCTGTCAATATCCTCTCTGAGGCTACATGGGCTAATCTCTTCTTTTTTCTACTTGCTAGTCGTGTGCTTGGAGCTTTTTGGTATTTATTTTCCATAGAAAGGAAAACAACTTGCTGGGTAAAAGTATGTAAAAATCAAGGTGTTACTTGTTATTTGTATTGCGATGACACCATGGTACTTAACCCACTCCAACTGATCAATGACTACTCTTGCTCTACAAAGACCAATAACACAGCCTTTGATTATGGAATATACCTTCTGTTAATGCTCGAGTCCGGCGGTATAATTTCACAAGCTCTTGTCTGCTTCATCAATGGCGATCTCGATCCCTCTACGCTTCCTTGCCGTCTCTTATCCTCCTTTGGTCAAAGTCTCAAAACAAGTACCTATGTCTGGGAGATCTACTTTTCAATTGTCGTTTCAATTTCTGGCTTGGTACTGTTTGCATTATTTATTGGAAATATACAGACGTACTTGAATTCGAAAGCTGAAAGAGTGAAGGAAATGAAATCGAACGGGCAAGAGATTGAATTGTGGATGGACTTTCATTCACTTCCTAAGTGCCTTAAGACTCGGTTCAGGAAATATCAGAAATATAGATGGCAAGAAACCAGAGGGGTTGATGTGGGGAAATTCCCTCAGAAACTTCCCAGGGACCTCGGGAGGGATACTAAGTCATATCTTTGTCTCGATGCTCTCAAAAAAGTGTTAGAATCTCATTGCAATGACGAACGAGTGTTAAGAGCAATCTGTGATCATCTGAAGCCAGTATTCTACATAAAGGACAGCATCATTTTCCAGAAGGATGACCAACTTGATGAAATGTTCATTATCACTCATGGCAGGGTAAGGACTTCCACCAAAATTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans cNMP_binding

Protein Analysis

424

Amino Acids

49.08

Weight (kDa)

9.35

Isoelectric Point (pI)

25.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017003)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0431511 RchiOBHm_Chr4g0431571 RchiOBHm_Chr5g0056491
rosa_laevigata	RLG00000006907
rosa_roxburghii	Rroxscaffold_4G00326600 Rroxscaffold_5G00372950 Rroxscaffold_5G00373030
rosa_rugosa	Rorug04G0250800 Rorug04G0250800
rosa_samantha	Rh4AG307500 Rh4CG330600 Rh4DG309000
rosa_wichuraiana	Rw4G026640 Rw4G026660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	180
AciI	CCGC	2 cut(s)	173, 681
AclWI	GGATC	1 cut(s)	722
AcsI	RAATTY	3 cut(s)	146, 880, 1034
AcuI	CTGAAG	1 cut(s)	1184
AfaI	GTAC	7 cut(s)	49, 161, 264, 579, 787, 840, 875
AfiI	CCNNNNNNNGG	4 cut(s)	421, 501, 795, 1066
AflII	CTTAAG	1 cut(s)	968
AgsI	TTSAA	6 cut(s)	347, 385, 813, 825, 880, 932
AjnI	CCWGG	1 cut(s)	1052
AluBI	AGCT	3 cut(s)	476, 698, 890
AluI	AGCT	3 cut(s)	476, 698, 890
Alw26I	GTCTC	3 cut(s)	755, 779, 1094
AlwI	GGATC	1 cut(s)	722
Ama87I	CYCGRG	2 cut(s)	671, 1061
ApeKI	GCWGC	1 cut(s)	32
ApoI	RAATTY	3 cut(s)	146, 880, 1034
AseI	ATTAAT	1 cut(s)	1269
AspS9I	GGNCC	2 cut(s)	122, 1057
AsuII	TTCGAA	3 cut(s)	103, 367, 884
AvaI	CYCGRG	2 cut(s)	671, 1061
AvaII	GGWCC	2 cut(s)	122, 1057
BaeI	ACNNNNGTAYC	2 cut(s)	39, 72
BarI	GAAGNNNNNNTAC	2 cut(s)	152, 184
BbvI	GCAGC	1 cut(s)	19
BccI	CCATC	3 cut(s)	38, 934, 996
BceAI	ACGGC	2 cut(s)	260, 732
BcgI	CGANNNNNNTGC	2 cut(s)	234, 268
BciT130I	CCWGG	1 cut(s)	1054
BciVI	GTATCC	1 cut(s)	1063
BclI	TGATCA	2 cut(s)	597, 1156
BcoDI	GTCTC	3 cut(s)	755, 779, 1094
BfaI	CTAG	2 cut(s)	176, 459
BfrI	CTTAAG	1 cut(s)	968
BfuI	GTATCC	1 cut(s)	1063
BglII	AGATCT	1 cut(s)	801
BisI	GCNGC	1 cut(s)	33
BlsI	GCNGC	1 cut(s)	34
Bme1390I	CCNGG	1 cut(s)	1054
Bme18I	GGWCC	2 cut(s)	122, 1057
BmeT110I	CYCGRG	2 cut(s)	671, 1061
BmgT120I	GGNCC	2 cut(s)	122, 1057
BmiI	GGNNCC	2 cut(s)	123, 1058
BmrFI	CCNGG	1 cut(s)	1054
BmrI	ACTGGG	1 cut(s)	128
BmsI	GCATC	3 cut(s)	301, 1084, 1200
BmuI	ACTGGG	1 cut(s)	128
Bpu10I	CCTNAGC	1 cut(s)	356
Bpu14I	TTCGAA	3 cut(s)	103, 367, 884
BsaBI	GATNNNNATC	1 cut(s)	726
BsaJI	CCNNGG	4 cut(s)	573, 1052, 1053, 1060
Bsc4I	CCNNNNNNNGG	4 cut(s)	421, 501, 795, 1066
Bse1I	ACTGG	3 cut(s)	123, 270, 1169
Bse3DI	GCAATG	2 cut(s)	1120, 1132
Bse8I	GATNNNNATC	1 cut(s)	726
BseBI	CCWGG	1 cut(s)	1054
BseDI	CCNNGG	4 cut(s)	573, 1052, 1053, 1060
BseGI	GGATG	3 cut(s)	81, 945, 1213
BseJI	GATNNNNATC	1 cut(s)	726
BseLI	CCNNNNNNNGG	4 cut(s)	421, 501, 795, 1066
BseMI	GCAATG	2 cut(s)	1120, 1132
BseMII	CTCAG	2 cut(s)	411, 1055
BseNI	ACTGG	3 cut(s)	123, 270, 1169
BseRI	GAGGAG	1 cut(s)	51
BseXI	GCAGC	1 cut(s)	19
BseYI	CCCAGC	1 cut(s)	516
BsiHKCI	CYCGRG	2 cut(s)	671, 1061
BsiSI	CCGG	1 cut(s)	678
BslFI	GGGAC	2 cut(s)	135, 1070
BslI	CCNNNNNNNGG	4 cut(s)	421, 501, 795, 1066
BsmAI	GTCTC	3 cut(s)	755, 779, 1094
BsmBI	CGTCTC	1 cut(s)	755
BsmFI	GGGAC	2 cut(s)	135, 1070
BsoBI	CYCGRG	2 cut(s)	671, 1061
Bsp119I	TTCGAA	3 cut(s)	103, 367, 884
Bsp143I	GATC	6 cut(s)	109, 597, 721, 727, 801, 1156
Bsp19I	CCATGG	1 cut(s)	573
BspACI	CCGC	2 cut(s)	173, 681
BspCNI	CTCAG	2 cut(s)	412, 1054
BspLI	GGNNCC	2 cut(s)	123, 1058
BspPI	GGATC	1 cut(s)	722
BspT104I	TTCGAA	3 cut(s)	103, 367, 884
BspTI	CTTAAG	1 cut(s)	968
BsrDI	GCAATG	2 cut(s)	1120, 1132
BsrI	ACTGG	3 cut(s)	123, 270, 1169
BssECI	CCNNGG	4 cut(s)	573, 1052, 1053, 1060
BssMI	GATC	6 cut(s)	109, 597, 721, 727, 801, 1156
BssT1I	CCWWGG	1 cut(s)	573
Bst2UI	CCWGG	1 cut(s)	1054
Bst4CI	ACNGT	1 cut(s)	843
Bst6I	CTCTTC	1 cut(s)	446
BstAFI	CTTAAG	1 cut(s)	968
BstBI	TTCGAA	3 cut(s)	103, 367, 884
BstDEI	CTNAG	5 cut(s)	356, 420, 960, 1041, 1074
BstDSI	CCRYGG	1 cut(s)	573
BstEII	GGTNACC	1 cut(s)	211
BstENI	CCTNNNNNAGG	1 cut(s)	419
BstF5I	GGATG	3 cut(s)	81, 945, 1213
BstKTI	GATC	6 cut(s)	112, 600, 724, 730, 804, 1159
BstMAI	GTCTC	3 cut(s)	755, 779, 1094
BstMBI	GATC	6 cut(s)	109, 597, 721, 727, 801, 1156
BstMWI	GCNNNNNNNGC	1 cut(s)	431
BstNI	CCWGG	1 cut(s)	1054
BstPI	GGTNACC	1 cut(s)	211
BstSCI	CCNGG	1 cut(s)	1052
BstV1I	GCAGC	1 cut(s)	19
BstX2I	RGATCY	1 cut(s)	801
BstYI	RGATCY	1 cut(s)	801
BsuI	GTATCC	1 cut(s)	1063
BtgI	CCRYGG	1 cut(s)	573
BtgZI	GCGATG	1 cut(s)	579
BtsCI	GGATG	3 cut(s)	81, 945, 1213
Cfr13I	GGNCC	2 cut(s)	122, 1057
Csp6I	GTAC	7 cut(s)	48, 160, 263, 578, 786, 839, 874
CviAII	CATG	4 cut(s)	141, 429, 574, 1241
CviQI	GTAC	7 cut(s)	48, 160, 263, 578, 786, 839, 874
DdeI	CTNAG	5 cut(s)	356, 420, 960, 1041, 1074
DpnI	GATC	6 cut(s)	111, 599, 723, 729, 803, 1158
DpnII	GATC	6 cut(s)	109, 597, 721, 727, 801, 1156
Eam1104I	CTCTTC	1 cut(s)	446
EarI	CTCTTC	1 cut(s)	446
Eco130I	CCWWGG	1 cut(s)	573
Eco47I	GGWCC	2 cut(s)	122, 1057
Eco57I	CTGAAG	1 cut(s)	1184
Eco88I	CYCGRG	2 cut(s)	671, 1061
Eco91I	GGTNACC	1 cut(s)	211
EcoNI	CCTNNNNNAGG	1 cut(s)	419
EcoO109I	RGGNCCY	1 cut(s)	1057
EcoO65I	GGTNACC	1 cut(s)	211
EcoRI	GAATTC	2 cut(s)	146, 880
EcoRII	CCWGG	1 cut(s)	1052
EcoT14I	CCWWGG	1 cut(s)	573
ErhI	CCWWGG	1 cut(s)	573
Esp3I	CGTCTC	1 cut(s)	755
FaeI	CATG	4 cut(s)	144, 432, 577, 1244
FaqI	GGGAC	2 cut(s)	135, 1070
FatI	CATG	4 cut(s)	140, 428, 573, 1240
FauI	CCCGC	1 cut(s)	180
FbaI	TGATCA	2 cut(s)	597, 1156
FblI	GTMKAC	1 cut(s)	180
Fnu4HI	GCNGC	1 cut(s)	33
FokI	GGATG	3 cut(s)	68, 952, 1220
Fsp4HI	GCNGC	1 cut(s)	33
FspBI	CTAG	2 cut(s)	176, 459
GluI	GCNGC	1 cut(s)	33
GsaI	CCCAGC	1 cut(s)	520
HapII	CCGG	1 cut(s)	678
Hin1II	CATG	4 cut(s)	144, 432, 577, 1244
HincII	GTYRAC	1 cut(s)	181
HindII	GTYRAC	1 cut(s)	181
HinfI	GANTC	5 cut(s)	296, 369, 674, 973, 1115
HpaII	CCGG	1 cut(s)	678
Hpy166II	GTNNAC	2 cut(s)	181, 263
Hpy188I	TCNGA	6 cut(s)	86, 228, 421, 993, 1044, 1164
Hpy188III	TCNNGA	6 cut(s)	308, 725, 982, 1063, 1091, 1201
Hpy8I	GTNNAC	2 cut(s)	181, 263
HpyAV	CCTTC	3 cut(s)	668, 895, 1198
HpyCH4III	ACNGT	1 cut(s)	843
HpyCH4IV	ACGT	1 cut(s)	872
HpyCH4V	TGCA	3 cut(s)	314, 848, 1125
HpyF10VI	GCNNNNNNNGC	1 cut(s)	431
HpyF3I	CTNAG	5 cut(s)	356, 420, 960, 1041, 1074
HpySE526I	ACGT	1 cut(s)	872
Hsp92II	CATG	4 cut(s)	144, 432, 577, 1244
Ksp22I	TGATCA	2 cut(s)	597, 1156
Kzo9I	GATC	6 cut(s)	109, 597, 721, 727, 801, 1156
LmnI	GCTCC	2 cut(s)	380, 473
Lsp1109I	GCAGC	1 cut(s)	19
LweI	GCATC	3 cut(s)	301, 1084, 1200
MaeI	CTAG	2 cut(s)	176, 459
MaeII	ACGT	1 cut(s)	872
MaeIII	GTNAC	4 cut(s)	55, 211, 391, 544
MalI	GATC	6 cut(s)	111, 599, 723, 729, 803, 1158
MboI	GATC	6 cut(s)	109, 597, 721, 727, 801, 1156
MboII	GAAGA	4 cut(s)	142, 160, 188, 433
MfeI	CAATTG	1 cut(s)	813
MflI	RGATCY	1 cut(s)	801
MlyI	GAGTC	3 cut(s)	305, 683, 967
MmeI	TCCRAC	1 cut(s)	616
MseI	TTAA	9 cut(s)	221, 249, 290, 582, 665, 969, 1142, 1269, 1273
MslI	CAYNNNNRTG	1 cut(s)	1125
MspCI	CTTAAG	1 cut(s)	968
MspI	CCGG	1 cut(s)	678
MspR9I	CCNGG	1 cut(s)	1054
MunI	CAATTG	1 cut(s)	813
MvaI	CCWGG	1 cut(s)	1054
MwoI	GCNNNNNNNGC	1 cut(s)	431
NcoI	CCATGG	1 cut(s)	573
NdeII	GATC	6 cut(s)	109, 597, 721, 727, 801, 1156
NlaIII	CATG	4 cut(s)	144, 432, 577, 1244
NlaIV	GGNNCC	2 cut(s)	123, 1058
NspV	TTCGAA	3 cut(s)	103, 367, 884
PacI	TTAATTAA	1 cut(s)	1273
PaeR7I	CTCGAG	1 cut(s)	671
PasI	CCCWGGG	1 cut(s)	1053
PfeI	GAWTC	2 cut(s)	369, 1115
PkrI	GCNGC	1 cut(s)	34
PleI	GAGTC	3 cut(s)	304, 682, 967
PpsI	GAGTC	3 cut(s)	304, 682, 967
PpuMI	RGGWCCY	1 cut(s)	1057
PshBI	ATTAAT	1 cut(s)	1269
Psp5II	RGGWCCY	1 cut(s)	1057
Psp6I	CCWGG	1 cut(s)	1052
PspEI	GGTNACC	1 cut(s)	211
PspFI	CCCAGC	1 cut(s)	516
PspGI	CCWGG	1 cut(s)	1052
PspN4I	GGNNCC	2 cut(s)	123, 1058
PspPI	GGNCC	2 cut(s)	122, 1057
PspPPI	RGGWCCY	1 cut(s)	1057
PspXI	VCTCGAGB	1 cut(s)	671
PsuI	RGATCY	1 cut(s)	801
RsaI	GTAC	7 cut(s)	49, 161, 264, 579, 787, 840, 875
RsaNI	GTAC	7 cut(s)	48, 160, 263, 578, 786, 839, 874
RseI	CAYNNNNRTG	1 cut(s)	1125
SalI	GTCGAC	1 cut(s)	179
SaqAI	TTAA	9 cut(s)	221, 249, 290, 582, 665, 969, 1142, 1269, 1273
SatI	GCNGC	1 cut(s)	33
Sau3AI	GATC	6 cut(s)	109, 597, 721, 727, 801, 1156
Sau96I	GGNCC	2 cut(s)	122, 1057
SchI	GAGTC	3 cut(s)	305, 683, 967
ScrFI	CCNGG	1 cut(s)	1054
SfaNI	GCATC	3 cut(s)	301, 1084, 1200
Sfr274I	CTCGAG	1 cut(s)	671
SfuI	TTCGAA	3 cut(s)	103, 367, 884
SinI	GGWCC	2 cut(s)	122, 1057
SlaI	CTCGAG	1 cut(s)	671
SmiMI	CAYNNNNRTG	1 cut(s)	1125
SmlI	CTYRAG	2 cut(s)	671, 968
SmoI	CTYRAG	2 cut(s)	671, 968
SsiI	CCGC	2 cut(s)	173, 681
SspMI	CTAG	2 cut(s)	176, 459
StyD4I	CCNGG	1 cut(s)	1052
StyI	CCWWGG	1 cut(s)	573
TaaI	ACNGT	1 cut(s)	843
TaiI	ACGT	1 cut(s)	875
TaqI	TCGA	9 cut(s)	103, 180, 244, 367, 672, 726, 884, 914, 1092
TatI	WGTACW	1 cut(s)	262
TfiI	GAWTC	2 cut(s)	369, 1115
Tru1I	TTAA	9 cut(s)	221, 249, 290, 582, 665, 969, 1142, 1269, 1273
Tru9I	TTAA	9 cut(s)	221, 249, 290, 582, 665, 969, 1142, 1269, 1273
TseI	GCWGC	1 cut(s)	32
TspDTI	ATGAA	6 cut(s)	57, 700, 923, 938, 1219, 1236
Vha464I	CTTAAG	1 cut(s)	968
VpaK11BI	GGWCC	2 cut(s)	122, 1057
VspI	ATTAAT	1 cut(s)	1269
XagI	CCTNNNNNAGG	1 cut(s)	419
XapI	RAATTY	3 cut(s)	146, 880, 1034
XcmI	CCANNNNNNNNNTGG	1 cut(s)	132
XhoI	CTCGAG	1 cut(s)	671
XmiI	GTMKAC	1 cut(s)	180
XspI	CTAG	2 cut(s)	176, 459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.