RLG00000006907

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0017003
Physical Location & Seq
Forward (+)
11763414 .. 11766715
3302 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006907

Sequence Viewer

Length: 1521 bp
ATGAGCTATAGGAGTAATAGTCAGATGGCACGGATACGGCCGACTTTTGATATAGAAGCAAATTATGCTGATTGCAAAGATGATAACCCTGTTTTGAAAGCAGTGTGTTCTTATTATGAAGTTCTGGGTTGCAAGACTAGAATTCTTGGCCCCAAAGAGCACTGTCTTCAGACAATTAACTACATCTTTCTTGTTTTCTGCTTTATTGCTCTCGCTCTGGATCCTTTATTCTGTTACATCCTTATCGTCAACGATGAGAACAAGTGCCTTAGATTGGACAAAACAGTACTGGCTTTTGCCGTCATTCCAAAAGTAAATGAGTCAAGGGTTCTTGATGCAACGCAGACACTCAAATCTGTGTTACTCTTTCAATACGGGCTAAGGGTTATTCGAATCTGCTCCTTGTTGAAAAATGTTATAAGGGCTTCTGTCAATATCCTCTCTGAGACTACATGGGCTAATCTCTCCTTTTTTCTACTTGCTAGTCATGTGCTTGGAGCTTTTTGGTATTTATTTTCCATAGAAAGGAAAACAACTTGCTGGGTAAAAGTATGTAAAAATCAAGGTGTTACTTGTTATTTGTATTGCGATGACACCATGGTACTTAACCCACTCCAACTGATCAATGACTACTCTTGCTCTACAAAGACCAATAACACAGCCTTTGATTATGGAATATACCTGCATGCTCTCGAATCGGGTGTCGTCTATTCAGATAATTTTCTACAAAAAATTTCTCTCTGCGTATGGTGGGGACTGCAAAACATAAGGTTATTTACTTTTGCACCCACGTACTTGAATTCGAAAGCTGAAAGAGTGAAGGAAATGAAATCGAACGGGCAAGAGATTGAATTGTGGATGGACTTTCATTCACTTCCTAACTGCCTTAAGACTCGGTTCAGGAAATATCAGAAATATAGATGGCAAGAAACCAGAGGGGTTGATGTGGGGAAATTCCTTCAGAAACTTCCCAGGGACCTCGGGAGGGATACTAAGTCATATCTTTGTTTCGATGCTCTCAAAAAAGTGTTAGAATCTCATTGCAATGACGAACGAGTGTTAAGAGAAATCTGTGATCATCTGAAGCCAGTATTCTACATAAAGGACAGCATCATTTTCCAGAAGGATGACCAACTTGATGAAATGTTCATTATCACTCATGGCAGGGTAAGGACTTCCACCAAAATTAATGGCTTGGACACTACAAGTCTTGGAAAAGGGCACTTTTACGGAGAACAACTTTTTGAATACTGGATTTCGAATTCTCCAATCAAATCGTCATCAAGCCCTGCATTACCCTTGTCGGAGAAGACCGTCGTGGCCCAGACAGATGTTCAAGTGTTCGTCATAAGAGCCAATGAATTGAGAATTGTGGTGGAGAAATTCTTGTGGCTCTTCATCCAGGAGGAGCGTGTGTACGGTCCGGCGAGGTTTAATTCAGAGAAATGGAAACCTTGGGCAGCAAAGACTGTACAAGCAGCATTTCGCAGGCACATTGCGAAAAAAAAGGGCTTTAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans cNMP_binding

Protein Analysis

507

Amino Acids

58.73

Weight (kDa)

9.02

Isoelectric Point (pI)

33.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
cNMP_binding PF00027 365 - 460 4.7e-07 Cyclic nucleotide-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 419
Acc36I ACCTGC 1 cut(s) 690
AclWI GGATC 2 cut(s) 215, 228
AcoI YGGCCR 1 cut(s) 38
AcsI RAATTY 6 cut(s) 141, 732, 799, 953, 1261, 1382
AcuI CTGAAG 3 cut(s) 152, 944, 1103
AfaI GTAC 5 cut(s) 288, 603, 794, 1418, 1473
AfiI CCNNNNNNNGG 3 cut(s) 274, 525, 985
AflII CTTAAG 1 cut(s) 887
AgsI TTSAA 7 cut(s) 97, 371, 409, 799, 851, 1247, 1337
AjnI CCWGG 2 cut(s) 971, 1401
AluBI AGCT 3 cut(s) 6, 500, 809
AluI AGCT 3 cut(s) 6, 500, 809
Alw21I GWGCWC 1 cut(s) 162
Alw26I GTCTC 1 cut(s) 440
AlwI GGATC 2 cut(s) 215, 228
Ama87I CYCGRG 1 cut(s) 980
AoxI GGCC 3 cut(s) 38, 148, 1320
ApeKI GCWGC 2 cut(s) 1460, 1478
ApoI RAATTY 6 cut(s) 141, 732, 799, 953, 1261, 1382
ArsI GACNNNNNNTTYG 2 cut(s) 687, 719
AseI ATTAAT 1 cut(s) 1188
AspS9I GGNCC 4 cut(s) 149, 976, 1321, 1421
AsuII TTCGAA 3 cut(s) 391, 803, 1259
AvaI CYCGRG 1 cut(s) 980
AvaII GGWCC 2 cut(s) 976, 1421
BaeGI GKGCMC 1 cut(s) 1224
BamHI GGATCC 1 cut(s) 220
BbsI GAAGAC 2 cut(s) 158, 1316
Bbv12I GWGCWC 1 cut(s) 162
BbvI GCAGC 2 cut(s) 1472, 1490
BccI CCATC 3 cut(s) 19, 853, 915
BceAI ACGGC 2 cut(s) 53, 284
BciT130I CCWGG 2 cut(s) 973, 1403
BciVI GTATCC 2 cut(s) 27, 982
BclI TGATCA 2 cut(s) 621, 1075
BcoDI GTCTC 1 cut(s) 440
BfaI CTAG 2 cut(s) 138, 483
BfmI CTRYAG 1 cut(s) 7
BfrI CTTAAG 1 cut(s) 887
BfuAI ACCTGC 1 cut(s) 690
BfuI GTATCC 2 cut(s) 27, 982
BisI GCNGC 2 cut(s) 1461, 1479
BlsI GCNGC 2 cut(s) 1462, 1480
BmcAI AGTACT 1 cut(s) 288
Bme1390I CCNGG 2 cut(s) 973, 1403
Bme18I GGWCC 2 cut(s) 976, 1421
BmeT110I CYCGRG 1 cut(s) 980
BmgT120I GGNCC 4 cut(s) 149, 976, 1321, 1421
BmiI GGNNCC 3 cut(s) 151, 222, 977
BmrFI CCNGG 2 cut(s) 973, 1403
BmsI GCATC 3 cut(s) 325, 1003, 1119
BpiI GAAGAC 2 cut(s) 158, 1316
Bpu10I CCTNAGC 1 cut(s) 380
Bpu14I TTCGAA 3 cut(s) 391, 803, 1259
BsaAI YACGTR 1 cut(s) 792
BsaJI CCNNGG 5 cut(s) 597, 971, 972, 979, 1454
BsaXI ACNNNNNCTCC 3 cut(s) 34, 1400, 1430
Bsc4I CCNNNNNNNGG 3 cut(s) 274, 525, 985
Bse1I ACTGG 3 cut(s) 294, 1088, 1256
Bse3DI GCAATG 3 cut(s) 1039, 1051, 1494
BseBI CCWGG 2 cut(s) 973, 1403
BseDI CCNNGG 5 cut(s) 597, 971, 972, 979, 1454
BseGI GGATG 4 cut(s) 237, 864, 1132, 1398
BseLI CCNNNNNNNGG 3 cut(s) 274, 525, 985
BseMI GCAATG 3 cut(s) 1039, 1051, 1494
BseMII CTCAG 1 cut(s) 435
BseNI ACTGG 3 cut(s) 294, 1088, 1256
BseRI GAGGAG 1 cut(s) 1421
BseSI GKGCMC 1 cut(s) 1224
BseX3I CGGCCG 1 cut(s) 38
BseXI GCAGC 2 cut(s) 1472, 1490
BseYI CCCAGC 1 cut(s) 540
Bsh1285I CGRYCG 1 cut(s) 41
BshFI GGCC 3 cut(s) 40, 150, 1322
BsiEI CGRYCG 1 cut(s) 41
BsiHKAI GWGCWC 1 cut(s) 162
BsiHKCI CYCGRG 1 cut(s) 980
BsiSI CCGG 1 cut(s) 1424
BslFI GGGAC 2 cut(s) 768, 989
BslI CCNNNNNNNGG 3 cut(s) 274, 525, 985
BsmAI GTCTC 1 cut(s) 440
BsmFI GGGAC 2 cut(s) 768, 989
BsnI GGCC 3 cut(s) 40, 150, 1322
BsoBI CYCGRG 1 cut(s) 980
Bsp119I TTCGAA 3 cut(s) 391, 803, 1259
Bsp1286I GDGCHC 2 cut(s) 162, 1224
Bsp1407I TGTACA 1 cut(s) 1471
Bsp143I GATC 3 cut(s) 220, 621, 1075
Bsp19I CCATGG 1 cut(s) 597
BspANI GGCC 3 cut(s) 40, 150, 1322
BspCNI CTCAG 1 cut(s) 436
BspLI GGNNCC 3 cut(s) 151, 222, 977
BspMI ACCTGC 1 cut(s) 690
BspPI GGATC 2 cut(s) 215, 228
BspQI GCTCTTC 1 cut(s) 1400
BspT104I TTCGAA 3 cut(s) 391, 803, 1259
BspTI CTTAAG 1 cut(s) 887
BsrDI GCAATG 3 cut(s) 1039, 1051, 1494
BsrGI TGTACA 1 cut(s) 1471
BsrI ACTGG 3 cut(s) 294, 1088, 1256
BssECI CCNNGG 5 cut(s) 597, 971, 972, 979, 1454
BssMI GATC 3 cut(s) 220, 621, 1075
BssT1I CCWWGG 2 cut(s) 597, 1454
Bst2UI CCWGG 2 cut(s) 973, 1403
Bst4CI ACNGT 5 cut(s) 164, 286, 1315, 1421, 1471
Bst6I CTCTTC 1 cut(s) 1400
BstAFI CTTAAG 1 cut(s) 887
BstAPI GCANNNNNTGC 1 cut(s) 65
BstAUI TGTACA 1 cut(s) 1471
BstBAI YACGTR 1 cut(s) 792
BstBI TTCGAA 3 cut(s) 391, 803, 1259
BstC8I GCNNGC 2 cut(s) 687, 1490
BstDEI CTNAG 4 cut(s) 269, 380, 444, 993
BstDSI CCRYGG 1 cut(s) 597
BstF5I GGATG 4 cut(s) 237, 864, 1132, 1398
BstKTI GATC 3 cut(s) 223, 624, 1078
BstMAI GTCTC 1 cut(s) 440
BstMBI GATC 3 cut(s) 220, 621, 1075
BstMCI CGRYCG 1 cut(s) 41
BstMWI GCNNNNNNNGC 1 cut(s) 65
BstNI CCWGG 2 cut(s) 973, 1403
BstNSI RCATGY 1 cut(s) 689
BstSCI CCNGG 2 cut(s) 971, 1401
BstSFI CTRYAG 1 cut(s) 7
BstSLI GKGCMC 1 cut(s) 1224
BstV1I GCAGC 2 cut(s) 1472, 1490
BstV2I GAAGAC 2 cut(s) 158, 1316
BstX2I RGATCY 1 cut(s) 220
BstYI RGATCY 1 cut(s) 220
BstZI CGGCCG 1 cut(s) 38
BsuI GTATCC 2 cut(s) 27, 982
BsuRI GGCC 3 cut(s) 40, 150, 1322
BtgI CCRYGG 1 cut(s) 597
BtgZI GCGATG 1 cut(s) 603
BtsCI GGATG 4 cut(s) 237, 864, 1132, 1398
BtsI GCAGTG 1 cut(s) 108
BtsIMutI CAGTG 2 cut(s) 108, 160
BveI ACCTGC 1 cut(s) 690
Cac8I GCNNGC 2 cut(s) 687, 1490
Cfr13I GGNCC 4 cut(s) 149, 976, 1321, 1421
CpoI CGGWCCG 1 cut(s) 1421
Csp6I GTAC 5 cut(s) 287, 602, 793, 1417, 1472
CspI CGGWCCG 1 cut(s) 1421
CviAII CATG 5 cut(s) 453, 488, 598, 686, 1160
CviQI GTAC 5 cut(s) 287, 602, 793, 1417, 1472
DdeI CTNAG 4 cut(s) 269, 380, 444, 993
DpnI GATC 3 cut(s) 222, 623, 1077
DpnII GATC 3 cut(s) 220, 621, 1075
EaeI YGGCCR 1 cut(s) 38
EagI CGGCCG 1 cut(s) 38
Eam1104I CTCTTC 1 cut(s) 1400
EarI CTCTTC 1 cut(s) 1400
EclXI CGGCCG 1 cut(s) 38
Eco130I CCWWGG 2 cut(s) 597, 1454
Eco47I GGWCC 2 cut(s) 976, 1421
Eco52I CGGCCG 1 cut(s) 38
Eco57I CTGAAG 3 cut(s) 152, 944, 1103
Eco88I CYCGRG 1 cut(s) 980
EcoO109I RGGNCCY 1 cut(s) 976
EcoRI GAATTC 3 cut(s) 141, 799, 1261
EcoRII CCWGG 2 cut(s) 971, 1401
EcoT14I CCWWGG 2 cut(s) 597, 1454
ErhI CCWWGG 2 cut(s) 597, 1454
FaeI CATG 5 cut(s) 456, 491, 601, 689, 1163
FaqI GGGAC 2 cut(s) 768, 989
FatI CATG 5 cut(s) 452, 487, 597, 685, 1159
FbaI TGATCA 2 cut(s) 621, 1075
Fnu4HI GCNGC 2 cut(s) 1461, 1479
FokI GGATG 4 cut(s) 224, 871, 1139, 1385
Fsp4HI GCNGC 2 cut(s) 1461, 1479
FspBI CTAG 2 cut(s) 138, 483
GluI GCNGC 2 cut(s) 1461, 1479
GsaI CCCAGC 1 cut(s) 544
HaeIII GGCC 3 cut(s) 40, 150, 1322
HapII CCGG 1 cut(s) 1424
Hin1II CATG 5 cut(s) 456, 491, 601, 689, 1163
HincII GTYRAC 1 cut(s) 250
HindII GTYRAC 1 cut(s) 250
HinfI GANTC 5 cut(s) 320, 393, 695, 892, 1034
HpaII CCGG 1 cut(s) 1424
Hpy166II GTNNAC 2 cut(s) 250, 1417
Hpy188I TCNGA 9 cut(s) 24, 171, 445, 715, 912, 963, 1083, 1306, 1441
Hpy188III TCNNGA 6 cut(s) 218, 332, 692, 901, 982, 1120
Hpy8I GTNNAC 2 cut(s) 250, 1417
Hpy99I CGWCG 1 cut(s) 1319
HpyAV CCTTC 3 cut(s) 814, 968, 1117
HpyCH4III ACNGT 5 cut(s) 164, 286, 1315, 1421, 1471
HpyCH4IV ACGT 1 cut(s) 791
HpyCH4V TGCA 8 cut(s) 75, 132, 338, 685, 760, 785, 1044, 1292
HpyF10VI GCNNNNNNNGC 1 cut(s) 65
HpyF3I CTNAG 4 cut(s) 269, 380, 444, 993
HpySE526I ACGT 1 cut(s) 791
Hsp92II CATG 5 cut(s) 456, 491, 601, 689, 1163
Ksp22I TGATCA 2 cut(s) 621, 1075
Kzo9I GATC 3 cut(s) 220, 621, 1075
LguI GCTCTTC 1 cut(s) 1400
LmnI GCTCC 3 cut(s) 404, 497, 1408
Lsp1109I GCAGC 2 cut(s) 1472, 1490
LweI GCATC 3 cut(s) 325, 1003, 1119
MaeI CTAG 2 cut(s) 138, 483
MaeII ACGT 1 cut(s) 791
MaeIII GTNAC 3 cut(s) 233, 360, 568
MalI GATC 3 cut(s) 222, 623, 1077
MboI GATC 3 cut(s) 220, 621, 1075
MboII GAAGA 3 cut(s) 158, 1321, 1387
MflI RGATCY 1 cut(s) 220
MhlI GDGCHC 2 cut(s) 162, 1224
MlyI GAGTC 2 cut(s) 329, 886
MmeI TCCRAC 2 cut(s) 640, 1284
MnlI CCTC 6 cut(s) 449, 929, 978, 989, 1399, 1422
MseI TTAA 7 cut(s) 177, 606, 888, 1061, 1188, 1434, 1515
MslI CAYNNNNRTG 1 cut(s) 1044
MspCI CTTAAG 1 cut(s) 887
MspI CCGG 1 cut(s) 1424
MspR9I CCNGG 2 cut(s) 973, 1403
MvaI CCWGG 2 cut(s) 973, 1403
MwoI GCNNNNNNNGC 1 cut(s) 65
NcoI CCATGG 1 cut(s) 597
NdeII GATC 3 cut(s) 220, 621, 1075
NlaIII CATG 5 cut(s) 456, 491, 601, 689, 1163
NlaIV GGNNCC 3 cut(s) 151, 222, 977
NspI RCATGY 1 cut(s) 689
NspV TTCGAA 3 cut(s) 391, 803, 1259
PaeI GCATGC 1 cut(s) 689
PasI CCCWGGG 1 cut(s) 972
PciSI GCTCTTC 1 cut(s) 1400
PfeI GAWTC 3 cut(s) 393, 695, 1034
PfoI TCCNGGA 1 cut(s) 1401
PkrI GCNGC 2 cut(s) 1462, 1480
PleI GAGTC 2 cut(s) 328, 886
PpsI GAGTC 2 cut(s) 328, 886
Ppu21I YACGTR 1 cut(s) 792
PpuMI RGGWCCY 1 cut(s) 976
PshBI ATTAAT 1 cut(s) 1188
PsiI TTATAA 1 cut(s) 419
Psp5II RGGWCCY 1 cut(s) 976
Psp6I CCWGG 2 cut(s) 971, 1401
PspFI CCCAGC 1 cut(s) 540
PspGI CCWGG 2 cut(s) 971, 1401
PspN4I GGNNCC 3 cut(s) 151, 222, 977
PspPI GGNCC 4 cut(s) 149, 976, 1321, 1421
PspPPI RGGWCCY 1 cut(s) 976
PsuI RGATCY 1 cut(s) 220
RsaI GTAC 5 cut(s) 288, 603, 794, 1418, 1473
RsaNI GTAC 5 cut(s) 287, 602, 793, 1417, 1472
RseI CAYNNNNRTG 1 cut(s) 1044
Rsr2I CGGWCCG 1 cut(s) 1421
RsrII CGGWCCG 1 cut(s) 1421
SapI GCTCTTC 1 cut(s) 1400
SaqAI TTAA 7 cut(s) 177, 606, 888, 1061, 1188, 1434, 1515
SatI GCNGC 2 cut(s) 1461, 1479
Sau3AI GATC 3 cut(s) 220, 621, 1075
Sau96I GGNCC 4 cut(s) 149, 976, 1321, 1421
ScaI AGTACT 1 cut(s) 288
SchI GAGTC 2 cut(s) 329, 886
ScrFI CCNGG 2 cut(s) 973, 1403
SduI GDGCHC 2 cut(s) 162, 1224
SfaNI GCATC 3 cut(s) 325, 1003, 1119
SfcI CTRYAG 1 cut(s) 7
SfuI TTCGAA 3 cut(s) 391, 803, 1259
SinI GGWCC 2 cut(s) 976, 1421
SmiMI CAYNNNNRTG 1 cut(s) 1044
SmlI CTYRAG 1 cut(s) 887
SmoI CTYRAG 1 cut(s) 887
SphI GCATGC 1 cut(s) 689
SspMI CTAG 2 cut(s) 138, 483
StyD4I CCNGG 2 cut(s) 971, 1401
StyI CCWWGG 2 cut(s) 597, 1454
TaaI ACNGT 5 cut(s) 164, 286, 1315, 1421, 1471
TaiI ACGT 1 cut(s) 794
TaqI TCGA 6 cut(s) 391, 693, 803, 833, 1011, 1259
TatI WGTACW 2 cut(s) 286, 1471
TfiI GAWTC 3 cut(s) 393, 695, 1034
Tru1I TTAA 7 cut(s) 177, 606, 888, 1061, 1188, 1434, 1515
Tru9I TTAA 7 cut(s) 177, 606, 888, 1061, 1188, 1434, 1515
TscAI CASTG 2 cut(s) 108, 167
TseI GCWGC 2 cut(s) 1460, 1478
TspDTI ATGAA 7 cut(s) 132, 842, 857, 1138, 1155, 1374, 1387
TspGWI ACGGA 2 cut(s) 46, 1245
TspRI CASTG 2 cut(s) 108, 167
Vha464I CTTAAG 1 cut(s) 887
VpaK11BI GGWCC 2 cut(s) 976, 1421
VspI ATTAAT 1 cut(s) 1188
XapI RAATTY 6 cut(s) 141, 732, 799, 953, 1261, 1382
XceI RCATGY 1 cut(s) 689
XspI CTAG 2 cut(s) 138, 483
ZrmI AGTACT 1 cut(s) 288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.