Rh4CG330600

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0017003
Physical Location & Seq
Reverse (-)
59157504 .. 59166441
8938 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG330600.1

Sequence Viewer

Length: 711 bp
ATGATCTTCATGAATTTGACGGCTGCGAACTCCTCCGCCGCCCTTTGTTGCCCCACCTCTGCCACCGCGTCTGCCTCACGAAATAGATTTGGGGCCATTTCTAATTTTTGCAATCTCGTCCATTTTGGTGACAAGAGATGGGTGTTGAGTGGGTTGGGCAGAGGCACCATAGGCATCGTTCTCAAGAAGCGTGTGACCTTCACGTCACCTGCATCAAAATCGGTGTTAGAATCTCATTGCAAAGACAAACGAGTATTCAGAGAAATCTGTGATCATCTGAAGCCAGTATTCTACATAAAGGACAGCATCATTTTCCAGGAGGATGACCAACTTGATGAAATGTTCATTATCACTCATGGCAGGGTAAGGACTTCCACCAAAATTAATGGCTTGGACACTACAAGTCTTGAAAAAGGGCACTTTTACGGAGAACAACTTTTTGAATACTGGATTTCGAATTCTCCAATCAAATCGTCATCAAGCCCTGCATTACCCTTGTCGGAGAAGACCGTCGTGGCCCAGACAGATGTTCAAGTGTTCGTCATAAGAGCCAATGAATTGAGAATTGTGGTGGAGAAATTCTTGTGGCTCTTCATCCAGGAGGAGCGTGTGTACGGTCCGGCGAGGTTTAATTCAGAGAAATGGAAACCTTGGGCAGCAAAGACTGTACAAGCAGCATTTCGCAGGCACATTGCGAAAAAAGGGCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans cNMP_binding

Protein Analysis

236

Amino Acids

26.69

Weight (kDa)

9.57

Isoelectric Point (pI)

39.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
cNMP_binding PF00027 97 - 192 1.4e-07 Cyclic nucleotide-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 217
AasI GACNNNNNNGTC 1 cut(s) 202
Acc36I ACCTGC 1 cut(s) 217
AccB1I GGYRCC 1 cut(s) 164
AccII CGCG 1 cut(s) 68
AciI CCGC 3 cut(s) 36, 39, 66
AcsI RAATTY 3 cut(s) 13, 457, 578
AcuI CTGAAG 1 cut(s) 299
AfaI GTAC 2 cut(s) 614, 669
AgsI TTSAA 3 cut(s) 410, 443, 533
AjiI CACGTC 1 cut(s) 204
AjnI CCWGG 2 cut(s) 315, 597
AoxI GGCC 2 cut(s) 93, 516
ApeKI GCWGC 3 cut(s) 23, 656, 674
ApoI RAATTY 3 cut(s) 13, 457, 578
AseI ATTAAT 1 cut(s) 384
AspS9I GGNCC 3 cut(s) 93, 517, 617
AsuHPI GGTGA 2 cut(s) 140, 198
AsuII TTCGAA 1 cut(s) 455
AvaII GGWCC 1 cut(s) 617
BaeGI GKGCMC 1 cut(s) 420
BanI GGYRCC 1 cut(s) 164
BbsI GAAGAC 1 cut(s) 512
BbvI GCAGC 3 cut(s) 10, 668, 686
BccI CCATC 1 cut(s) 132
BceAI ACGGC 1 cut(s) 36
BcgI CGANNNNNNTGC 2 cut(s) 201, 235
BciT130I CCWGG 2 cut(s) 317, 599
BclI TGATCA 1 cut(s) 271
BfuAI ACCTGC 1 cut(s) 217
BisI GCNGC 4 cut(s) 24, 39, 657, 675
BlsI GCNGC 4 cut(s) 25, 40, 658, 676
Bme1390I CCNGG 2 cut(s) 317, 599
Bme18I GGWCC 1 cut(s) 617
BmgBI CACGTC 1 cut(s) 204
BmgT120I GGNCC 3 cut(s) 93, 517, 617
BmiI GGNNCC 2 cut(s) 94, 166
BmrFI CCNGG 2 cut(s) 317, 599
BmsI GCATC 3 cut(s) 183, 221, 315
BpiI GAAGAC 1 cut(s) 512
Bpu14I TTCGAA 1 cut(s) 455
BpuEI CTTGAG 1 cut(s) 167
BsaJI CCNNGG 1 cut(s) 650
BsaXI ACNNNNNCTCC 2 cut(s) 596, 626
Bse1I ACTGG 2 cut(s) 284, 452
Bse3DI GCAATG 2 cut(s) 235, 690
BseBI CCWGG 2 cut(s) 317, 599
BseDI CCNNGG 1 cut(s) 650
BseGI GGATG 2 cut(s) 328, 594
BseMI GCAATG 2 cut(s) 235, 690
BseNI ACTGG 2 cut(s) 284, 452
BseRI GAGGAG 2 cut(s) 22, 617
BseSI GKGCMC 1 cut(s) 420
BseXI GCAGC 3 cut(s) 10, 668, 686
Bsh1236I CGCG 1 cut(s) 68
BshFI GGCC 2 cut(s) 95, 518
BshNI GGYRCC 1 cut(s) 164
BsiSI CCGG 1 cut(s) 620
BsnI GGCC 2 cut(s) 95, 518
Bsp119I TTCGAA 1 cut(s) 455
Bsp1286I GDGCHC 1 cut(s) 420
Bsp1407I TGTACA 1 cut(s) 667
Bsp143I GATC 2 cut(s) 3, 271
BspACI CCGC 3 cut(s) 36, 39, 66
BspANI GGCC 2 cut(s) 95, 518
BspFNI CGCG 1 cut(s) 68
BspHI TCATGA 1 cut(s) 9
BspLI GGNNCC 2 cut(s) 94, 166
BspMI ACCTGC 1 cut(s) 217
BspQI GCTCTTC 1 cut(s) 596
BspT104I TTCGAA 1 cut(s) 455
BspT107I GGYRCC 1 cut(s) 164
BsrDI GCAATG 2 cut(s) 235, 690
BsrGI TGTACA 1 cut(s) 667
BsrI ACTGG 2 cut(s) 284, 452
BssECI CCNNGG 1 cut(s) 650
BssMI GATC 2 cut(s) 3, 271
BssT1I CCWWGG 1 cut(s) 650
Bst2UI CCWGG 2 cut(s) 317, 599
Bst4CI ACNGT 3 cut(s) 511, 617, 667
Bst6I CTCTTC 1 cut(s) 596
BstAUI TGTACA 1 cut(s) 667
BstBI TTCGAA 1 cut(s) 455
BstC8I GCNNGC 1 cut(s) 686
BstF5I GGATG 2 cut(s) 328, 594
BstFNI CGCG 1 cut(s) 68
BstKTI GATC 2 cut(s) 6, 274
BstMBI GATC 2 cut(s) 3, 271
BstMWI GCNNNNNNNGC 1 cut(s) 171
BstNI CCWGG 2 cut(s) 317, 599
BstSCI CCNGG 2 cut(s) 315, 597
BstSLI GKGCMC 1 cut(s) 420
BstUI CGCG 1 cut(s) 68
BstV1I GCAGC 3 cut(s) 10, 668, 686
BstV2I GAAGAC 1 cut(s) 512
BsuRI GGCC 2 cut(s) 95, 518
BtrI CACGTC 1 cut(s) 204
BtsCI GGATG 2 cut(s) 328, 594
BveI ACCTGC 1 cut(s) 217
Cac8I GCNNGC 1 cut(s) 686
CciI TCATGA 1 cut(s) 9
Cfr13I GGNCC 3 cut(s) 93, 517, 617
CpoI CGGWCCG 1 cut(s) 617
CseI GACGC 1 cut(s) 57
Csp6I GTAC 2 cut(s) 613, 668
CspI CGGWCCG 1 cut(s) 617
CviAII CATG 2 cut(s) 10, 356
CviJI RGCY 9 cut(s) 23, 95, 283, 390, 483, 518, 551, 589, 706
CviKI_1 RGCY 9 cut(s) 23, 95, 283, 390, 483, 518, 551, 589, 706
CviQI GTAC 2 cut(s) 613, 668
DpnI GATC 2 cut(s) 5, 273
DpnII GATC 2 cut(s) 3, 271
DrdI GACNNNNNNGTC 1 cut(s) 202
DseDI GACNNNNNNGTC 1 cut(s) 202
Eam1104I CTCTTC 1 cut(s) 596
EarI CTCTTC 1 cut(s) 596
EciI GGCGGA 1 cut(s) 25
Eco130I CCWWGG 1 cut(s) 650
Eco47I GGWCC 1 cut(s) 617
Eco57I CTGAAG 1 cut(s) 299
EcoRI GAATTC 1 cut(s) 457
EcoRII CCWGG 2 cut(s) 315, 597
EcoT14I CCWWGG 1 cut(s) 650
ErhI CCWWGG 1 cut(s) 650
FaeI CATG 2 cut(s) 13, 359
FaiI YATR 5 cut(s) 11, 170, 296, 357, 545
FatI CATG 2 cut(s) 9, 355
FbaI TGATCA 1 cut(s) 271
Fnu4HI GCNGC 4 cut(s) 24, 39, 657, 675
FokI GGATG 2 cut(s) 335, 581
Fsp4HI GCNGC 4 cut(s) 24, 39, 657, 675
GluI GCNGC 4 cut(s) 24, 39, 657, 675
HaeIII GGCC 2 cut(s) 95, 518
HapII CCGG 1 cut(s) 620
HgaI GACGC 1 cut(s) 57
Hin1II CATG 2 cut(s) 13, 359
HinfI GANTC 1 cut(s) 230
HpaII CCGG 1 cut(s) 620
HphI GGTGA 2 cut(s) 140, 198
Hpy166II GTNNAC 1 cut(s) 613
Hpy188I TCNGA 4 cut(s) 260, 279, 502, 637
Hpy188III TCNNGA 4 cut(s) 10, 78, 184, 407
Hpy8I GTNNAC 1 cut(s) 613
Hpy99I CGWCG 1 cut(s) 515
HpyAV CCTTC 1 cut(s) 208
HpyCH4III ACNGT 3 cut(s) 511, 617, 667
HpyCH4IV ACGT 1 cut(s) 203
HpyCH4V TGCA 4 cut(s) 111, 212, 240, 488
HpyF10VI GCNNNNNNNGC 1 cut(s) 171
HpySE526I ACGT 1 cut(s) 203
Hsp92II CATG 2 cut(s) 13, 359
Ksp22I TGATCA 1 cut(s) 271
Kzo9I GATC 2 cut(s) 3, 271
LguI GCTCTTC 1 cut(s) 596
LmnI GCTCC 1 cut(s) 604
Lsp1109I GCAGC 3 cut(s) 10, 668, 686
LweI GCATC 3 cut(s) 183, 221, 315
MaeII ACGT 1 cut(s) 203
MaeIII GTNAC 3 cut(s) 128, 193, 204
MalI GATC 2 cut(s) 5, 273
MboI GATC 2 cut(s) 3, 271
MboII GAAGA 2 cut(s) 517, 583
MhlI GDGCHC 1 cut(s) 420
MluCI AATT 8 cut(s) 13, 103, 381, 457, 557, 564, 578, 631
MmeI TCCRAC 1 cut(s) 480
MnlI CCTC 7 cut(s) 43, 67, 85, 155, 313, 595, 618
MseI TTAA 2 cut(s) 384, 630
MslI CAYNNNNRTG 1 cut(s) 126
MspI CCGG 1 cut(s) 620
MspR9I CCNGG 2 cut(s) 317, 599
MvaI CCWGG 2 cut(s) 317, 599
MvnI CGCG 1 cut(s) 68
MwoI GCNNNNNNNGC 1 cut(s) 171
NdeII GATC 2 cut(s) 3, 271
NlaIII CATG 2 cut(s) 13, 359
NlaIV GGNNCC 2 cut(s) 94, 166
NmuCI GTSAC 3 cut(s) 128, 193, 204
NspV TTCGAA 1 cut(s) 455
PagI TCATGA 1 cut(s) 9
PaqCI CACCTGC 1 cut(s) 217
PciSI GCTCTTC 1 cut(s) 596
PfeI GAWTC 1 cut(s) 230
PfoI TCCNGGA 2 cut(s) 315, 597
PkrI GCNGC 4 cut(s) 25, 40, 658, 676
PshBI ATTAAT 1 cut(s) 384
Psp6I CCWGG 2 cut(s) 315, 597
PspGI CCWGG 2 cut(s) 315, 597
PspN4I GGNNCC 2 cut(s) 94, 166
PspPI GGNCC 3 cut(s) 93, 517, 617
RsaI GTAC 2 cut(s) 614, 669
RsaNI GTAC 2 cut(s) 613, 668
RseI CAYNNNNRTG 1 cut(s) 126
Rsr2I CGGWCCG 1 cut(s) 617
RsrII CGGWCCG 1 cut(s) 617
SapI GCTCTTC 1 cut(s) 596
SaqAI TTAA 2 cut(s) 384, 630
SatI GCNGC 4 cut(s) 24, 39, 657, 675
Sau3AI GATC 2 cut(s) 3, 271
Sau96I GGNCC 3 cut(s) 93, 517, 617
ScrFI CCNGG 2 cut(s) 317, 599
SduI GDGCHC 1 cut(s) 420
SetI ASST 6 cut(s) 59, 200, 206, 211, 629, 652
SfaNI GCATC 3 cut(s) 183, 221, 315
SfuI TTCGAA 1 cut(s) 455
SinI GGWCC 1 cut(s) 617
SmiMI CAYNNNNRTG 1 cut(s) 126
SmlI CTYRAG 1 cut(s) 182
SmoI CTYRAG 1 cut(s) 182
Sse9I AATT 8 cut(s) 13, 103, 381, 457, 557, 564, 578, 631
SsiI CCGC 3 cut(s) 36, 39, 66
StyD4I CCNGG 2 cut(s) 315, 597
StyI CCWWGG 1 cut(s) 650
TaaI ACNGT 3 cut(s) 511, 617, 667
TaiI ACGT 1 cut(s) 206
TaqI TCGA 1 cut(s) 455
TasI AATT 8 cut(s) 13, 103, 381, 457, 557, 564, 578, 631
TatI WGTACW 1 cut(s) 667
TauI GCSGC 1 cut(s) 41
TfiI GAWTC 1 cut(s) 230
Tru1I TTAA 2 cut(s) 384, 630
Tru9I TTAA 2 cut(s) 384, 630
TseFI GTSAC 3 cut(s) 128, 193, 204
TseI GCWGC 3 cut(s) 23, 656, 674
Tsp45I GTSAC 3 cut(s) 128, 193, 204
TspDTI ATGAA 5 cut(s) 26, 334, 351, 570, 583
TspGWI ACGGA 1 cut(s) 441
VpaK11BI GGWCC 1 cut(s) 617
VspI ATTAAT 1 cut(s) 384
XapI RAATTY 3 cut(s) 13, 457, 578
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.