RchiOBHm_Chr4g0431511

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0017003
Physical Location & Seq
Reverse (-)
55726334 .. 55731924
5591 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ40016

Sequence Viewer

Length: 615 bp
ATGAACTGTTGTATTAAGGTGCTTGGAGCTTTTTGGTATTTATTTTCCATAGAAAGGAAAACAATTTGTTGGGTAGAAGTATGTAAAAATCAAGGTGTTGCTTGTTCTTTGTATTGCGATGACACCATGCTAAGGAGTCAAAATAGAGAGTCTGCTAAAGATGCTCTAAACCCACTCCAACTGATCAATGACTACTCTTGCTCTCCAAAGACCAATAACACAGCCTTTGATTATGGAATATCCCTTCATGCTCTCGAATCGGGTGTCGTCTATTCAGATAATTTTCTACAAAAGATTTCTCTCTGCTTATGGTGGGGACTGCAAAACATAAGCTCCTTTGGTCAAAGTCTCAAAACAAATACCTATGTGTGGGAGATCTACTTTTCAATTGTCGTTTCAATTTCTGGCTTGGTACTGTTTGCATTATTTATTGGAAATATACAGACGTACTTGAATTCGAAAGCTGAAAGAGTGAAGGAAATGAAATCGAACGGGCAAGAGATTGAATTGTGGATGGACTTTCATTCACTTCCTAAGTGGCTTAAGACTCGGTTCAGGAAGTATCAGAAATATAGATGGCAAGAAAGGTATCAGCCAACTCCTCAGCATGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans cNMP_binding

Protein Analysis

204

Amino Acids

23.87

Weight (kDa)

8.72

Isoelectric Point (pI)

43.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ion_trans PF00520 93 - 157 8e-06 Ion transport protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 454
AfaI GTAC 2 cut(s) 414, 449
AfiI CCNNNNNNNGG 3 cut(s) 54, 132, 369
AflII CTTAAG 1 cut(s) 542
AgsI TTSAA 4 cut(s) 387, 399, 454, 506
AluBI AGCT 3 cut(s) 29, 333, 464
AluI AGCT 3 cut(s) 29, 333, 464
Alw26I GTCTC 1 cut(s) 353
ApoI RAATTY 1 cut(s) 454
ArsI GACNNNNNNTTYG 2 cut(s) 249, 281
AsuII TTCGAA 1 cut(s) 458
BbvCI CCTCAGC 1 cut(s) 603
BccI CCATC 2 cut(s) 508, 570
BclI TGATCA 1 cut(s) 183
BcoDI GTCTC 1 cut(s) 353
BfrI CTTAAG 1 cut(s) 542
BglII AGATCT 1 cut(s) 375
BmsI GCATC 1 cut(s) 151
Bpu10I CCTNAGC 2 cut(s) 131, 603
Bpu14I TTCGAA 1 cut(s) 458
BsaXI ACNNNNNCTCC 2 cut(s) 317, 347
Bsc4I CCNNNNNNNGG 3 cut(s) 54, 132, 369
BseGI GGATG 1 cut(s) 519
BseLI CCNNNNNNNGG 3 cut(s) 54, 132, 369
BseRI GAGGAG 1 cut(s) 591
BslFI GGGAC 1 cut(s) 330
BslI CCNNNNNNNGG 3 cut(s) 54, 132, 369
BsmAI GTCTC 1 cut(s) 353
BsmFI GGGAC 1 cut(s) 330
Bsp119I TTCGAA 1 cut(s) 458
Bsp143I GATC 2 cut(s) 183, 375
BspT104I TTCGAA 1 cut(s) 458
BspTI CTTAAG 1 cut(s) 542
BssMI GATC 2 cut(s) 183, 375
Bst4CI ACNGT 2 cut(s) 8, 417
BstAFI CTTAAG 1 cut(s) 542
BstBI TTCGAA 1 cut(s) 458
BstDEI CTNAG 3 cut(s) 131, 534, 603
BstF5I GGATG 1 cut(s) 519
BstKTI GATC 2 cut(s) 186, 378
BstMAI GTCTC 1 cut(s) 353
BstMBI GATC 2 cut(s) 183, 375
BstMWI GCNNNNNNNGC 1 cut(s) 161
BstNSI RCATGY 1 cut(s) 611
BstX2I RGATCY 1 cut(s) 375
BstYI RGATCY 1 cut(s) 375
BtgZI GCGATG 1 cut(s) 132
BtsCI GGATG 1 cut(s) 519
Csp6I GTAC 2 cut(s) 413, 448
CviAII CATG 3 cut(s) 127, 248, 608
CviJI RGCY 7 cut(s) 29, 224, 333, 408, 464, 541, 595
CviKI_1 RGCY 7 cut(s) 29, 224, 333, 408, 464, 541, 595
CviQI GTAC 2 cut(s) 413, 448
DdeI CTNAG 3 cut(s) 131, 534, 603
DpnI GATC 2 cut(s) 185, 377
DpnII GATC 2 cut(s) 183, 375
EcoRI GAATTC 1 cut(s) 454
FaeI CATG 3 cut(s) 130, 251, 611
FaqI GGGAC 1 cut(s) 330
FatI CATG 3 cut(s) 126, 247, 607
FbaI TGATCA 1 cut(s) 183
FokI GGATG 1 cut(s) 526
Hin1II CATG 3 cut(s) 130, 251, 611
HinfI GANTC 4 cut(s) 136, 149, 257, 547
Hpy188I TCNGA 2 cut(s) 277, 567
Hpy188III TCNNGA 2 cut(s) 254, 556
HpyAV CCTTC 2 cut(s) 254, 469
HpyCH4III ACNGT 2 cut(s) 8, 417
HpyCH4IV ACGT 1 cut(s) 446
HpyCH4V TGCA 2 cut(s) 322, 422
HpyF10VI GCNNNNNNNGC 1 cut(s) 161
HpyF3I CTNAG 3 cut(s) 131, 534, 603
HpySE526I ACGT 1 cut(s) 446
Hsp92II CATG 3 cut(s) 130, 251, 611
Ksp22I TGATCA 1 cut(s) 183
Kzo9I GATC 2 cut(s) 183, 375
LmnI GCTCC 2 cut(s) 26, 338
LpnPI CCDG 2 cut(s) 390, 541
LweI GCATC 1 cut(s) 151
MaeII ACGT 1 cut(s) 446
MalI GATC 2 cut(s) 185, 377
MboI GATC 2 cut(s) 183, 375
MfeI CAATTG 1 cut(s) 387
MflI RGATCY 1 cut(s) 375
MluCI AATT 6 cut(s) 63, 280, 387, 399, 454, 506
MlyI GAGTC 3 cut(s) 145, 158, 541
MmeI TCCRAC 1 cut(s) 202
MnlI CCTC 1 cut(s) 612
MseI TTAA 2 cut(s) 15, 543
MspCI CTTAAG 1 cut(s) 542
MunI CAATTG 1 cut(s) 387
MwoI GCNNNNNNNGC 1 cut(s) 161
NdeII GATC 2 cut(s) 183, 375
NlaIII CATG 3 cut(s) 130, 251, 611
NspI RCATGY 1 cut(s) 611
NspV TTCGAA 1 cut(s) 458
PfeI GAWTC 1 cut(s) 257
PleI GAGTC 3 cut(s) 144, 157, 541
PpsI GAGTC 3 cut(s) 144, 157, 541
PsuI RGATCY 1 cut(s) 375
RsaI GTAC 2 cut(s) 414, 449
RsaNI GTAC 2 cut(s) 413, 448
SaqAI TTAA 2 cut(s) 15, 543
Sau3AI GATC 2 cut(s) 183, 375
SchI GAGTC 3 cut(s) 145, 158, 541
SetI ASST 8 cut(s) 21, 31, 97, 335, 365, 449, 466, 590
SfaNI GCATC 1 cut(s) 151
SfuI TTCGAA 1 cut(s) 458
SmlI CTYRAG 1 cut(s) 542
SmoI CTYRAG 1 cut(s) 542
Sse9I AATT 6 cut(s) 63, 280, 387, 399, 454, 506
TaaI ACNGT 2 cut(s) 8, 417
TaiI ACGT 1 cut(s) 449
TaqI TCGA 3 cut(s) 255, 458, 488
TasI AATT 6 cut(s) 63, 280, 387, 399, 454, 506
TfiI GAWTC 1 cut(s) 257
Tru1I TTAA 2 cut(s) 15, 543
Tru9I TTAA 2 cut(s) 15, 543
TspDTI ATGAA 4 cut(s) 17, 236, 497, 512
Vha464I CTTAAG 1 cut(s) 542
XapI RAATTY 1 cut(s) 454
XceI RCATGY 1 cut(s) 611
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.