Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0017003

Physical Location & Seq

Genomic Coordinates Reverse (-)

58757356 .. 58766835

Gene Structure 9480 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00326600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGTTTCTCGGCTACGGATATAACATTAATAAGCTTATGAAACCTCGTGATCCATCCAAAGCATTGACTTCGATACGCTCCTATGGTCAGACTTTGACTACAAGCACATATACCAGTGAAACTTCTTTTGCTATACTCATTGCTATTTTGGGTCTGGTTCTGTTTGCACACTTAATTGGAAATATGCAGAAATCAGAGGTGATGGGATGCTGGGCGCGCGAGCTGCAGGTTAGTGGGCTGCTGGGATCTGTAAGGCGGGCTGGTGCGGTGGCTGGAGCGGTGTGCAGCGCGGGCTGGAGGGAGGCGAGCGGACTGGGCTGTGGTTGCGTTGGTTGGGGAAGGCAGAAGCTAGCGGGGGCTACAAGTAGTGGACTTGCAGGAGGCGTGGCAGGATGCGCGGGGGCTGCAGCAGGGGCGGGCTGGTATGATTGCAGGTGTGCTGCACGGGCTGGAGGCCGGTGGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0008150 GO:0008324 GO:0009987 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042391 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans cNMP_binding

Protein Analysis

155

Amino Acids

15.93

Weight (kDa)

9.53

Isoelectric Point (pI)

30.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017003)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0431511 RchiOBHm_Chr4g0431571 RchiOBHm_Chr5g0056491
rosa_laevigata	RLG00000006907
rosa_roxburghii	Rroxscaffold_4G00326600 Rroxscaffold_5G00372950 Rroxscaffold_5G00373030
rosa_rugosa	Rorug04G0250800 Rorug04G0250800
rosa_samantha	Rh4AG307500 Rh4CG330600 Rh4DG309000
rosa_wichuraiana	Rw4G026640 Rw4G026660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	423
Acc36I	ACCTGC	2 cut(s)	217, 423
AccBSI	CCGCTC	2 cut(s)	278, 309
AccII	CGCG	4 cut(s)	217, 219, 290, 398
AciI	CCGC	8 cut(s)	256, 266, 278, 290, 309, 353, 398, 416
AclWI	GGATC	2 cut(s)	44, 253
AluBI	AGCT	3 cut(s)	34, 223, 349
AluI	AGCT	3 cut(s)	34, 223, 349
AlwI	GGATC	2 cut(s)	44, 253
AoxI	GGCC	1 cut(s)	454
ApeKI	GCWGC	6 cut(s)	223, 238, 285, 404, 407, 440
AseI	ATTAAT	1 cut(s)	27
AspLEI	GCGC	4 cut(s)	217, 219, 290, 398
AsuHPI	GGTGA	1 cut(s)	211
AsuNHI	GCTAGC	1 cut(s)	349
BauI	CACGAG	1 cut(s)	45
BbvI	GCAGC	6 cut(s)	210, 225, 297, 391, 419, 427
BccI	CCATC	2 cut(s)	61, 196
BcgI	CGANNNNNNTGC	2 cut(s)	51, 85
BfaI	CTAG	1 cut(s)	350
BfmI	CTRYAG	2 cut(s)	224, 405
BfuAI	ACCTGC	2 cut(s)	217, 423
BisI	GCNGC	6 cut(s)	224, 239, 286, 405, 408, 441
BlsI	GCNGC	6 cut(s)	225, 240, 287, 406, 409, 442
BmrI	ACTGGG	1 cut(s)	323
BmsI	GCATC	2 cut(s)	197, 383
BmtI	GCTAGC	1 cut(s)	353
BmuI	ACTGGG	1 cut(s)	323
BpmI	CTGGAG	2 cut(s)	294, 316
Bse118I	RCCGGY	1 cut(s)	456
Bse1I	ACTGG	2 cut(s)	114, 318
Bse3DI	GCAATG	1 cut(s)	138
BseGI	GGATG	3 cut(s)	53, 212, 398
BseMI	GCAATG	1 cut(s)	138
BseNI	ACTGG	2 cut(s)	114, 318
BsePI	GCGCGC	1 cut(s)	215
BseXI	GCAGC	6 cut(s)	210, 225, 297, 391, 419, 427
BseYI	CCCAGC	2 cut(s)	210, 241
BsgI	GTGCAG	2 cut(s)	304, 426
Bsh1236I	CGCG	4 cut(s)	217, 219, 290, 398
BshFI	GGCC	1 cut(s)	456
BsiSI	CCGG	1 cut(s)	457
BsnI	GGCC	1 cut(s)	456
Bsp143I	GATC	2 cut(s)	49, 245
BspACI	CCGC	8 cut(s)	256, 266, 278, 290, 309, 353, 398, 416
BspANI	GGCC	1 cut(s)	456
BspFNI	CGCG	4 cut(s)	217, 219, 290, 398
BspMAI	CTGCAG	2 cut(s)	228, 409
BspMI	ACCTGC	2 cut(s)	217, 423
BspOI	GCTAGC	1 cut(s)	353
BspPI	GGATC	2 cut(s)	44, 253
BsrBI	CCGCTC	2 cut(s)	278, 309
BsrDI	GCAATG	1 cut(s)	138
BsrFI	RCCGGY	1 cut(s)	456
BsrI	ACTGG	2 cut(s)	114, 318
BssAI	RCCGGY	1 cut(s)	456
BssHII	GCGCGC	1 cut(s)	215
BssMI	GATC	2 cut(s)	49, 245
BssSI	CACGAG	1 cut(s)	45
Bst2BI	CACGAG	1 cut(s)	45
BstC8I	GCNNGC	7 cut(s)	217, 221, 258, 292, 307, 351, 418
BstF5I	GGATG	3 cut(s)	53, 212, 398
BstFNI	CGCG	4 cut(s)	217, 219, 290, 398
BstHHI	GCGC	4 cut(s)	217, 219, 290, 398
BstKTI	GATC	2 cut(s)	52, 248
BstMBI	GATC	2 cut(s)	49, 245
BstMWI	GCNNNNNNNGC	9 cut(s)	216, 223, 291, 315, 324, 395, 404, 413, 446
BstSFI	CTRYAG	2 cut(s)	224, 405
BstUI	CGCG	4 cut(s)	217, 219, 290, 398
BstV1I	GCAGC	6 cut(s)	210, 225, 297, 391, 419, 427
BstX2I	RGATCY	1 cut(s)	245
BstYI	RGATCY	1 cut(s)	245
BsuRI	GGCC	1 cut(s)	456
BtsCI	GGATG	3 cut(s)	53, 212, 398
BtsIMutI	CAGTG	1 cut(s)	121
BveI	ACCTGC	2 cut(s)	217, 423
Cac8I	GCNNGC	7 cut(s)	217, 221, 258, 292, 307, 351, 418
CfoI	GCGC	4 cut(s)	217, 219, 290, 398
Cfr10I	RCCGGY	1 cut(s)	456
DpnI	GATC	2 cut(s)	51, 247
DpnII	GATC	2 cut(s)	49, 245
FaiI	YATR	8 cut(s)	21, 38, 84, 109, 111, 134, 185, 426
FauI	CCCGC	5 cut(s)	249, 283, 346, 391, 409
Fnu4HI	GCNGC	6 cut(s)	224, 239, 286, 405, 408, 441
FokI	GGATG	3 cut(s)	40, 219, 405
Fsp4HI	GCNGC	6 cut(s)	224, 239, 286, 405, 408, 441
FspBI	CTAG	1 cut(s)	350
GlaI	GCGC	4 cut(s)	216, 218, 289, 397
GluI	GCNGC	6 cut(s)	224, 239, 286, 405, 408, 441
GsaI	CCCAGC	2 cut(s)	214, 245
GsuI	CTGGAG	2 cut(s)	294, 316
HaeIII	GGCC	1 cut(s)	456
HapII	CCGG	1 cut(s)	457
HhaI	GCGC	4 cut(s)	217, 219, 290, 398
Hin6I	GCGC	4 cut(s)	215, 217, 288, 396
HinP1I	GCGC	4 cut(s)	215, 217, 288, 396
HindIII	AAGCTT	1 cut(s)	32
HpaII	CCGG	1 cut(s)	457
HphI	GGTGA	1 cut(s)	211
Hpy166II	GTNNAC	1 cut(s)	371
Hpy188I	TCNGA	2 cut(s)	90, 196
Hpy188III	TCNNGA	1 cut(s)	47
Hpy8I	GTNNAC	1 cut(s)	371
HpyAV	CCTTC	1 cut(s)	333
HpyCH4V	TGCA	8 cut(s)	167, 187, 226, 285, 377, 407, 432, 443
HpyF10VI	GCNNNNNNNGC	9 cut(s)	216, 223, 291, 315, 324, 395, 404, 413, 446
HspAI	GCGC	4 cut(s)	215, 217, 288, 396
Kzo9I	GATC	2 cut(s)	49, 245
LmnI	GCTCC	2 cut(s)	83, 275
Lsp1109I	GCAGC	6 cut(s)	210, 225, 297, 391, 419, 427
LweI	GCATC	2 cut(s)	197, 383
MaeI	CTAG	1 cut(s)	350
MalI	GATC	2 cut(s)	51, 247
MbiI	CCGCTC	2 cut(s)	278, 309
MboI	GATC	2 cut(s)	49, 245
MflI	RGATCY	1 cut(s)	245
MluCI	AATT	2 cut(s)	174, 463
MnlI	CCTC	6 cut(s)	54, 190, 291, 295, 374, 446
MseI	TTAA	2 cut(s)	27, 173
MspI	CCGG	1 cut(s)	457
MvnI	CGCG	4 cut(s)	217, 219, 290, 398
MwoI	GCNNNNNNNGC	9 cut(s)	216, 223, 291, 315, 324, 395, 404, 413, 446
NdeII	GATC	2 cut(s)	49, 245
NheI	GCTAGC	1 cut(s)	349
PaqCI	CACCTGC	1 cut(s)	423
PauI	GCGCGC	1 cut(s)	215
PkrI	GCNGC	6 cut(s)	225, 240, 287, 406, 409, 442
PshBI	ATTAAT	1 cut(s)	27
PspFI	CCCAGC	2 cut(s)	210, 241
PstI	CTGCAG	2 cut(s)	228, 409
PsuI	RGATCY	1 cut(s)	245
PteI	GCGCGC	1 cut(s)	215
SaqAI	TTAA	2 cut(s)	27, 173
SatI	GCNGC	6 cut(s)	224, 239, 286, 405, 408, 441
Sau3AI	GATC	2 cut(s)	49, 245
SetI	ASST	7 cut(s)	36, 46, 201, 225, 231, 351, 437
SfaNI	GCATC	2 cut(s)	197, 383
SfcI	CTRYAG	2 cut(s)	224, 405
Sse9I	AATT	2 cut(s)	174, 463
SsiI	CCGC	8 cut(s)	256, 266, 278, 290, 309, 353, 398, 416
SspMI	CTAG	1 cut(s)	350
TaqI	TCGA	1 cut(s)	71
TasI	AATT	2 cut(s)	174, 463
Tru1I	TTAA	2 cut(s)	27, 173
Tru9I	TTAA	2 cut(s)	27, 173
TscAI	CASTG	1 cut(s)	121
TseI	GCWGC	6 cut(s)	223, 238, 285, 404, 407, 440
TspDTI	ATGAA	1 cut(s)	53
TspGWI	ACGGA	1 cut(s)	30
TspRI	CASTG	1 cut(s)	121
VspI	ATTAAT	1 cut(s)	27
XspI	CTAG	1 cut(s)	350

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.