Rh4AG307500

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0017003
Physical Location & Seq
Reverse (-)
61930083 .. 61933038
2956 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG307500.1

Sequence Viewer

Length: 1002 bp
ATGGCACGGATACGGCCGAGTTTTGATATAGAAGCAAATTATGCTGATTGCAAAGATGATAACCCTGTTTTGAAAGCAGTGTGTTCTTATTATGAAGTTCTGGGTTGCAAGACTAGAATTCTTGGCCCCAAAGAGCACTGTCTTCAGACAATTAACTACATCTTTCTTGTTTTCTGCTTTATTGCTCTCGCTCTGGATCCTTTATTCTGTTACATCCTTATCGTCAACGACGAGAACAAGTGCCTTAGATTGGACAAAACAGTGAGTACCGTAGCTACTGCTTCGCGTTCTGCCATTGACTTCTTTTATATGTTTCATACCATATGTCAGTACTTCTGTGCTGCCCTCCGTGATGGTACTATTGTTACTCCTCATTCATATCCAAAAATCATCCGAAAACATAAATCCTTTCGAAAAAATCATAAACTGGCACCAACGAGTAAATGGGAATCCTTCTTGTCGTACCTTTTCTTCCCGCTAGTCGACATATTTGTAATTCTTCCACTCCCACAGGTGTTAGAATCTCATTGCAAAGACAAACGAGTATTCAGAGAAATCTGTGATCATCTGAAGCCAGTATTCTACATAAAGGACAGCATCATTTTCCAGGAGGATGACCAACTTGATGAAATGTTCATTATCACTCATGGCAGGGTAAGGACTTCCACCAAAATTAATGGCTTGGACACTACAAGTCTTGAAAAAGGGCACTTTTACGGAGAACAACTTTTTGAATACTGGATTTCGAATTCTCCAATCAAATCGTCATCAAGCCCTGCATTACCCTTGTCGGAGAAGACCGTCGTGGCCCAGACAGATGTTCAAGTGTTCGTCATAAGAGCCAATGAATTGAGAATTGTGGTGGAGAAATTCTTGTGGCTCTTCATCCAGGAGGAGCGTGTGTACGGTCCGGCGAGGTTTAATTCAGAGAAATGGAAACCTTGGGCAGCAAAGACTGTACAAGCAGCATTTCGCAGGCACATTGCGAAAAAAGGGCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans cNMP_binding

Protein Analysis

333

Amino Acids

38.65

Weight (kDa)

8.84

Isoelectric Point (pI)

41.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
cNMP_binding PF00027 194 - 289 2.7e-07 Cyclic nucleotide-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 430
AccI GTMKAC 1 cut(s) 483
AccII CGCG 1 cut(s) 286
AciI CCGC 1 cut(s) 476
AclWI GGATC 2 cut(s) 191, 204
AcoI YGGCCR 1 cut(s) 14
AcsI RAATTY 3 cut(s) 117, 748, 869
AcuI CTGAAG 2 cut(s) 128, 590
AfaI GTAC 6 cut(s) 268, 332, 358, 464, 905, 960
AfiI CCNNNNNNNGG 1 cut(s) 250
AgsI TTSAA 4 cut(s) 73, 701, 734, 824
AjnI CCWGG 2 cut(s) 606, 888
AluBI AGCT 1 cut(s) 275
AluI AGCT 1 cut(s) 275
Alw21I GWGCWC 1 cut(s) 138
AlwI GGATC 2 cut(s) 191, 204
AoxI GGCC 3 cut(s) 14, 124, 807
ApeKI GCWGC 3 cut(s) 341, 947, 965
ApoI RAATTY 3 cut(s) 117, 748, 869
AseI ATTAAT 1 cut(s) 675
AspS9I GGNCC 3 cut(s) 125, 808, 908
AsuII TTCGAA 2 cut(s) 412, 746
AvaII GGWCC 1 cut(s) 908
BaeGI GKGCMC 1 cut(s) 711
BaeI ACNNNNGTAYC 2 cut(s) 348, 381
BamHI GGATCC 1 cut(s) 196
BanI GGYRCC 1 cut(s) 430
BarI GAAGNNNNNNTAC 2 cut(s) 455, 487
BbsI GAAGAC 2 cut(s) 134, 803
Bbv12I GWGCWC 1 cut(s) 138
BbvI GCAGC 3 cut(s) 328, 959, 977
BccI CCATC 1 cut(s) 347
BceAI ACGGC 1 cut(s) 29
BciT130I CCWGG 2 cut(s) 608, 890
BciVI GTATCC 1 cut(s) 3
BclI TGATCA 1 cut(s) 562
BfaI CTAG 2 cut(s) 114, 479
BfuI GTATCC 1 cut(s) 3
BisI GCNGC 3 cut(s) 342, 948, 966
BlsI GCNGC 3 cut(s) 343, 949, 967
BmcAI AGTACT 1 cut(s) 332
Bme1390I CCNGG 2 cut(s) 608, 890
Bme18I GGWCC 1 cut(s) 908
BmgT120I GGNCC 3 cut(s) 125, 808, 908
BmiI GGNNCC 3 cut(s) 127, 198, 432
BmrFI CCNGG 2 cut(s) 608, 890
BmsI GCATC 1 cut(s) 606
BpiI GAAGAC 2 cut(s) 134, 803
Bpu14I TTCGAA 2 cut(s) 412, 746
BsaJI CCNNGG 1 cut(s) 941
BsaXI ACNNNNNCTCC 2 cut(s) 887, 917
Bsc4I CCNNNNNNNGG 1 cut(s) 250
Bse1I ACTGG 3 cut(s) 432, 575, 743
Bse3DI GCAATG 2 cut(s) 526, 981
BseBI CCWGG 2 cut(s) 608, 890
BseDI CCNNGG 1 cut(s) 941
BseGI GGATG 4 cut(s) 213, 390, 619, 885
BseLI CCNNNNNNNGG 1 cut(s) 250
BseMI GCAATG 2 cut(s) 526, 981
BseNI ACTGG 3 cut(s) 432, 575, 743
BseRI GAGGAG 2 cut(s) 360, 908
BseSI GKGCMC 1 cut(s) 711
BseX3I CGGCCG 1 cut(s) 14
BseXI GCAGC 3 cut(s) 328, 959, 977
Bsh1236I CGCG 1 cut(s) 286
Bsh1285I CGRYCG 1 cut(s) 17
BshFI GGCC 3 cut(s) 16, 126, 809
BshNI GGYRCC 1 cut(s) 430
BsiEI CGRYCG 1 cut(s) 17
BsiHKAI GWGCWC 1 cut(s) 138
BsiSI CCGG 1 cut(s) 911
BslI CCNNNNNNNGG 1 cut(s) 250
BsnI GGCC 3 cut(s) 16, 126, 809
Bsp119I TTCGAA 2 cut(s) 412, 746
Bsp1286I GDGCHC 2 cut(s) 138, 711
Bsp1407I TGTACA 1 cut(s) 958
Bsp143I GATC 2 cut(s) 196, 562
BspACI CCGC 1 cut(s) 476
BspANI GGCC 3 cut(s) 16, 126, 809
BspFNI CGCG 1 cut(s) 286
BspLI GGNNCC 3 cut(s) 127, 198, 432
BspPI GGATC 2 cut(s) 191, 204
BspQI GCTCTTC 1 cut(s) 887
BspT104I TTCGAA 2 cut(s) 412, 746
BspT107I GGYRCC 1 cut(s) 430
BsrDI GCAATG 2 cut(s) 526, 981
BsrGI TGTACA 1 cut(s) 958
BsrI ACTGG 3 cut(s) 432, 575, 743
BssECI CCNNGG 1 cut(s) 941
BssMI GATC 2 cut(s) 196, 562
BssT1I CCWWGG 1 cut(s) 941
Bst2UI CCWGG 2 cut(s) 608, 890
Bst4CI ACNGT 6 cut(s) 140, 262, 271, 802, 908, 958
Bst6I CTCTTC 1 cut(s) 887
BstAPI GCANNNNNTGC 1 cut(s) 41
BstAUI TGTACA 1 cut(s) 958
BstBI TTCGAA 2 cut(s) 412, 746
BstC8I GCNNGC 1 cut(s) 977
BstDEI CTNAG 1 cut(s) 245
BstF5I GGATG 4 cut(s) 213, 390, 619, 885
BstFNI CGCG 1 cut(s) 286
BstKTI GATC 2 cut(s) 199, 565
BstMBI GATC 2 cut(s) 196, 562
BstMCI CGRYCG 1 cut(s) 17
BstMWI GCNNNNNNNGC 1 cut(s) 41
BstNI CCWGG 2 cut(s) 608, 890
BstSCI CCNGG 2 cut(s) 606, 888
BstSLI GKGCMC 1 cut(s) 711
BstUI CGCG 1 cut(s) 286
BstV1I GCAGC 3 cut(s) 328, 959, 977
BstV2I GAAGAC 2 cut(s) 134, 803
BstX2I RGATCY 1 cut(s) 196
BstYI RGATCY 1 cut(s) 196
BstZI CGGCCG 1 cut(s) 14
BsuI GTATCC 1 cut(s) 3
BsuRI GGCC 3 cut(s) 16, 126, 809
BtsCI GGATG 4 cut(s) 213, 390, 619, 885
BtsI GCAGTG 1 cut(s) 84
BtsIMutI CAGTG 3 cut(s) 84, 136, 267
Cac8I GCNNGC 1 cut(s) 977
Cfr13I GGNCC 3 cut(s) 125, 808, 908
CpoI CGGWCCG 1 cut(s) 908
Csp6I GTAC 6 cut(s) 267, 331, 357, 463, 904, 959
CspI CGGWCCG 1 cut(s) 908
CviAII CATG 1 cut(s) 647
CviQI GTAC 6 cut(s) 267, 331, 357, 463, 904, 959
DdeI CTNAG 1 cut(s) 245
DpnI GATC 2 cut(s) 198, 564
DpnII GATC 2 cut(s) 196, 562
EaeI YGGCCR 1 cut(s) 14
EagI CGGCCG 1 cut(s) 14
Eam1104I CTCTTC 1 cut(s) 887
EarI CTCTTC 1 cut(s) 887
EclXI CGGCCG 1 cut(s) 14
Eco130I CCWWGG 1 cut(s) 941
Eco47I GGWCC 1 cut(s) 908
Eco52I CGGCCG 1 cut(s) 14
Eco57I CTGAAG 2 cut(s) 128, 590
EcoRI GAATTC 2 cut(s) 117, 748
EcoRII CCWGG 2 cut(s) 606, 888
EcoT14I CCWWGG 1 cut(s) 941
ErhI CCWWGG 1 cut(s) 941
FaeI CATG 1 cut(s) 650
FatI CATG 1 cut(s) 646
FauI CCCGC 1 cut(s) 483
FauNDI CATATG 1 cut(s) 323
FbaI TGATCA 1 cut(s) 562
FblI GTMKAC 1 cut(s) 483
Fnu4HI GCNGC 3 cut(s) 342, 948, 966
FokI GGATG 4 cut(s) 200, 377, 626, 872
Fsp4HI GCNGC 3 cut(s) 342, 948, 966
FspBI CTAG 2 cut(s) 114, 479
GluI GCNGC 3 cut(s) 342, 948, 966
HaeIII GGCC 3 cut(s) 16, 126, 809
HapII CCGG 1 cut(s) 911
Hin1II CATG 1 cut(s) 650
HincII GTYRAC 2 cut(s) 226, 484
HindII GTYRAC 2 cut(s) 226, 484
HinfI GANTC 2 cut(s) 449, 521
HpaII CCGG 1 cut(s) 911
Hpy166II GTNNAC 3 cut(s) 226, 484, 904
Hpy188I TCNGA 6 cut(s) 147, 395, 551, 570, 793, 928
Hpy188III TCNNGA 2 cut(s) 194, 698
Hpy8I GTNNAC 3 cut(s) 226, 484, 904
Hpy99I CGWCG 2 cut(s) 233, 806
HpyAV CCTTC 1 cut(s) 463
HpyCH4III ACNGT 6 cut(s) 140, 262, 271, 802, 908, 958
HpyCH4V TGCA 4 cut(s) 51, 108, 531, 779
HpyF10VI GCNNNNNNNGC 1 cut(s) 41
HpyF3I CTNAG 1 cut(s) 245
Hsp92II CATG 1 cut(s) 650
Ksp22I TGATCA 1 cut(s) 562
Kzo9I GATC 2 cut(s) 196, 562
LguI GCTCTTC 1 cut(s) 887
LmnI GCTCC 1 cut(s) 895
Lsp1109I GCAGC 3 cut(s) 328, 959, 977
LweI GCATC 1 cut(s) 606
MaeI CTAG 2 cut(s) 114, 479
MaeIII GTNAC 2 cut(s) 209, 364
MalI GATC 2 cut(s) 198, 564
MboI GATC 2 cut(s) 196, 562
MboII GAAGA 5 cut(s) 134, 463, 491, 808, 874
MflI RGATCY 1 cut(s) 196
MhlI GDGCHC 2 cut(s) 138, 711
MmeI TCCRAC 1 cut(s) 771
MnlI CCTC 5 cut(s) 356, 381, 604, 886, 909
MseI TTAA 3 cut(s) 153, 675, 921
MspI CCGG 1 cut(s) 911
MspR9I CCNGG 2 cut(s) 608, 890
MvaI CCWGG 2 cut(s) 608, 890
MvnI CGCG 1 cut(s) 286
MwoI GCNNNNNNNGC 1 cut(s) 41
NdeI CATATG 1 cut(s) 323
NdeII GATC 2 cut(s) 196, 562
NlaIII CATG 1 cut(s) 650
NlaIV GGNNCC 3 cut(s) 127, 198, 432
NmeAIII GCCGAG 1 cut(s) 42
NspV TTCGAA 2 cut(s) 412, 746
PciSI GCTCTTC 1 cut(s) 887
PcsI WCGNNNNNNNCGW 1 cut(s) 228
PfeI GAWTC 2 cut(s) 449, 521
PfoI TCCNGGA 2 cut(s) 606, 888
PkrI GCNGC 3 cut(s) 343, 949, 967
PshBI ATTAAT 1 cut(s) 675
Psp6I CCWGG 2 cut(s) 606, 888
PspGI CCWGG 2 cut(s) 606, 888
PspN4I GGNNCC 3 cut(s) 127, 198, 432
PspPI GGNCC 3 cut(s) 125, 808, 908
PsuI RGATCY 1 cut(s) 196
RsaI GTAC 6 cut(s) 268, 332, 358, 464, 905, 960
RsaNI GTAC 6 cut(s) 267, 331, 357, 463, 904, 959
Rsr2I CGGWCCG 1 cut(s) 908
RsrII CGGWCCG 1 cut(s) 908
SalI GTCGAC 1 cut(s) 482
SapI GCTCTTC 1 cut(s) 887
SaqAI TTAA 3 cut(s) 153, 675, 921
SatI GCNGC 3 cut(s) 342, 948, 966
Sau3AI GATC 2 cut(s) 196, 562
Sau96I GGNCC 3 cut(s) 125, 808, 908
ScaI AGTACT 1 cut(s) 332
ScrFI CCNGG 2 cut(s) 608, 890
SduI GDGCHC 2 cut(s) 138, 711
SetI ASST 5 cut(s) 277, 468, 516, 920, 943
SfaNI GCATC 1 cut(s) 606
SfuI TTCGAA 2 cut(s) 412, 746
SinI GGWCC 1 cut(s) 908
SsiI CCGC 1 cut(s) 476
SspMI CTAG 2 cut(s) 114, 479
StyD4I CCNGG 2 cut(s) 606, 888
StyI CCWWGG 1 cut(s) 941
TaaI ACNGT 6 cut(s) 140, 262, 271, 802, 908, 958
TaqI TCGA 3 cut(s) 412, 483, 746
TatI WGTACW 2 cut(s) 330, 958
TfiI GAWTC 2 cut(s) 449, 521
Tru1I TTAA 3 cut(s) 153, 675, 921
Tru9I TTAA 3 cut(s) 153, 675, 921
TscAI CASTG 3 cut(s) 84, 143, 267
TseI GCWGC 3 cut(s) 341, 947, 965
TspDTI ATGAA 7 cut(s) 108, 305, 366, 625, 642, 861, 874
TspGWI ACGGA 3 cut(s) 22, 338, 732
TspRI CASTG 3 cut(s) 84, 143, 267
VpaK11BI GGWCC 1 cut(s) 908
VspI ATTAAT 1 cut(s) 675
XapI RAATTY 3 cut(s) 117, 748, 869
XcmI CCANNNNNNNNNTGG 1 cut(s) 441
XmiI GTMKAC 1 cut(s) 483
XspI CTAG 2 cut(s) 114, 479
ZrmI AGTACT 1 cut(s) 332
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.