Rh4DG309000

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0017003
Physical Location & Seq
Forward (+)
53085825 .. 53088955
3131 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG309000.1

Sequence Viewer

Length: 285 bp
ATGAAGGAGATGAGGCTATTTTTAATGATCATGGATCTTGCTCTTACAAAAGTGTTTGCATTACCCTTGTCGGAGAAGACCGTCGTGGCCCAGACAGATGTTCAAGTATTCGTCATAAGAGCAAATGAATTGAGAATTGTGGTGGAGAAATTCTTGTGGCTCTTCATCCAGGAGGAGCGTGTGTACGGTCCGGCGAGGTTTAATTCAGAGAAATGGAAACCTTGGGCAGCAAAGACTGTACAAGCAGCATTTCGCAGGCACATTGCGAAAAAAAAAGGGCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans cNMP_binding

Protein Analysis

94

Amino Acids

11.07

Weight (kDa)

10.22

Isoelectric Point (pI)

33.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 42
AcsI RAATTY 1 cut(s) 149
AfaI GTAC 2 cut(s) 185, 240
AgsI TTSAA 1 cut(s) 104
AjnI CCWGG 1 cut(s) 168
AlwI GGATC 1 cut(s) 42
AoxI GGCC 1 cut(s) 87
ApeKI GCWGC 2 cut(s) 227, 245
ApoI RAATTY 1 cut(s) 149
AspS9I GGNCC 2 cut(s) 88, 188
AvaII GGWCC 1 cut(s) 188
BbsI GAAGAC 1 cut(s) 83
BbvI GCAGC 2 cut(s) 239, 257
BciT130I CCWGG 1 cut(s) 170
BclI TGATCA 1 cut(s) 27
BisI GCNGC 2 cut(s) 228, 246
BlsI GCNGC 2 cut(s) 229, 247
Bme1390I CCNGG 1 cut(s) 170
Bme18I GGWCC 1 cut(s) 188
BmgT120I GGNCC 2 cut(s) 88, 188
BmrFI CCNGG 1 cut(s) 170
BpiI GAAGAC 1 cut(s) 83
BsaJI CCNNGG 1 cut(s) 221
BsaXI ACNNNNNCTCC 2 cut(s) 167, 197
Bse3DI GCAATG 1 cut(s) 261
BseBI CCWGG 1 cut(s) 170
BseDI CCNNGG 1 cut(s) 221
BseGI GGATG 1 cut(s) 165
BseMI GCAATG 1 cut(s) 261
BseRI GAGGAG 1 cut(s) 188
BseXI GCAGC 2 cut(s) 239, 257
BshFI GGCC 1 cut(s) 89
BsiSI CCGG 1 cut(s) 191
BsnI GGCC 1 cut(s) 89
Bsp1407I TGTACA 1 cut(s) 238
Bsp143I GATC 2 cut(s) 27, 34
BspANI GGCC 1 cut(s) 89
BspPI GGATC 1 cut(s) 42
BspQI GCTCTTC 1 cut(s) 167
BsrDI GCAATG 1 cut(s) 261
BsrGI TGTACA 1 cut(s) 238
BssECI CCNNGG 1 cut(s) 221
BssMI GATC 2 cut(s) 27, 34
BssT1I CCWWGG 1 cut(s) 221
Bst2UI CCWGG 1 cut(s) 170
Bst4CI ACNGT 3 cut(s) 82, 188, 238
Bst6I CTCTTC 1 cut(s) 167
BstAUI TGTACA 1 cut(s) 238
BstC8I GCNNGC 1 cut(s) 257
BstF5I GGATG 1 cut(s) 165
BstKTI GATC 2 cut(s) 30, 37
BstMBI GATC 2 cut(s) 27, 34
BstNI CCWGG 1 cut(s) 170
BstSCI CCNGG 1 cut(s) 168
BstV1I GCAGC 2 cut(s) 239, 257
BstV2I GAAGAC 1 cut(s) 83
BstX2I RGATCY 1 cut(s) 34
BstYI RGATCY 1 cut(s) 34
BsuRI GGCC 1 cut(s) 89
BtsCI GGATG 1 cut(s) 165
Cac8I GCNNGC 1 cut(s) 257
Cfr13I GGNCC 2 cut(s) 88, 188
CpoI CGGWCCG 1 cut(s) 188
Csp6I GTAC 2 cut(s) 184, 239
CspI CGGWCCG 1 cut(s) 188
CviAII CATG 1 cut(s) 31
CviJI RGCY 4 cut(s) 16, 89, 160, 280
CviKI_1 RGCY 4 cut(s) 16, 89, 160, 280
CviQI GTAC 2 cut(s) 184, 239
DpnI GATC 2 cut(s) 29, 36
DpnII GATC 2 cut(s) 27, 34
Eam1104I CTCTTC 1 cut(s) 167
EarI CTCTTC 1 cut(s) 167
Eco130I CCWWGG 1 cut(s) 221
Eco47I GGWCC 1 cut(s) 188
EcoRII CCWGG 1 cut(s) 168
EcoT14I CCWWGG 1 cut(s) 221
ErhI CCWWGG 1 cut(s) 221
FaeI CATG 1 cut(s) 34
FaiI YATR 2 cut(s) 32, 116
FatI CATG 1 cut(s) 30
FbaI TGATCA 1 cut(s) 27
Fnu4HI GCNGC 2 cut(s) 228, 246
FokI GGATG 1 cut(s) 152
Fsp4HI GCNGC 2 cut(s) 228, 246
GluI GCNGC 2 cut(s) 228, 246
HaeIII GGCC 1 cut(s) 89
HapII CCGG 1 cut(s) 191
Hin1II CATG 1 cut(s) 34
HpaII CCGG 1 cut(s) 191
Hpy166II GTNNAC 1 cut(s) 184
Hpy188I TCNGA 2 cut(s) 73, 208
Hpy8I GTNNAC 1 cut(s) 184
Hpy99I CGWCG 1 cut(s) 86
HpyCH4III ACNGT 3 cut(s) 82, 188, 238
HpyCH4V TGCA 1 cut(s) 59
Hsp92II CATG 1 cut(s) 34
Ksp22I TGATCA 1 cut(s) 27
Kzo9I GATC 2 cut(s) 27, 34
LguI GCTCTTC 1 cut(s) 167
LmnI GCTCC 1 cut(s) 175
LpnPI CCDG 5 cut(s) 104, 155, 182, 204, 241
Lsp1109I GCAGC 2 cut(s) 239, 257
MalI GATC 2 cut(s) 29, 36
MboI GATC 2 cut(s) 27, 34
MboII GAAGA 2 cut(s) 88, 154
MflI RGATCY 1 cut(s) 34
MluCI AATT 4 cut(s) 128, 135, 149, 202
MmeI TCCRAC 1 cut(s) 51
MnlI CCTC 3 cut(s) 6, 166, 189
MseI TTAA 2 cut(s) 23, 201
MspI CCGG 1 cut(s) 191
MspR9I CCNGG 1 cut(s) 170
MvaI CCWGG 1 cut(s) 170
NdeII GATC 2 cut(s) 27, 34
NlaIII CATG 1 cut(s) 34
PciSI GCTCTTC 1 cut(s) 167
PfoI TCCNGGA 1 cut(s) 168
PkrI GCNGC 2 cut(s) 229, 247
Psp6I CCWGG 1 cut(s) 168
PspGI CCWGG 1 cut(s) 168
PspPI GGNCC 2 cut(s) 88, 188
PsuI RGATCY 1 cut(s) 34
RsaI GTAC 2 cut(s) 185, 240
RsaNI GTAC 2 cut(s) 184, 239
Rsr2I CGGWCCG 1 cut(s) 188
RsrII CGGWCCG 1 cut(s) 188
SapI GCTCTTC 1 cut(s) 167
SaqAI TTAA 2 cut(s) 23, 201
SatI GCNGC 2 cut(s) 228, 246
Sau3AI GATC 2 cut(s) 27, 34
Sau96I GGNCC 2 cut(s) 88, 188
ScrFI CCNGG 1 cut(s) 170
SetI ASST 2 cut(s) 200, 223
SinI GGWCC 1 cut(s) 188
Sse9I AATT 4 cut(s) 128, 135, 149, 202
StyD4I CCNGG 1 cut(s) 168
StyI CCWWGG 1 cut(s) 221
TaaI ACNGT 3 cut(s) 82, 188, 238
TasI AATT 4 cut(s) 128, 135, 149, 202
TatI WGTACW 1 cut(s) 238
Tru1I TTAA 2 cut(s) 23, 201
Tru9I TTAA 2 cut(s) 23, 201
TseI GCWGC 2 cut(s) 227, 245
TspDTI ATGAA 3 cut(s) 17, 141, 154
VpaK11BI GGWCC 1 cut(s) 188
XapI RAATTY 1 cut(s) 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.