Rroxscaffold_5G00373030

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0017003
Physical Location & Seq
Reverse (-)
54298216 .. 54308583
10368 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00373030.1

Sequence Viewer

Length: 726 bp
ATGCAGTTTTGGAGCAAGTGCAAGTGCCGGGCTACTAATATGTGTTATCTGAAATTGCAAGCTACAACAAAAGCACACCAAAATGTGTGGTTGGAGCTGCATAAAAACAACACAAAAATCAATTGGAAGTCTATTGTCTTTTTGGCATTGGGACAACAGAAAACTATAAAAGAGAGTGGCTTTTGGCATGGGCACAAGCTTGCGTCACTTCTCTACAGCAGTATTCTGGATACTATGGGCCCAAACAATTGTGGTATGGTTTCTTTGATTCTAATTGAAGTAAAGGACAGCATCATTTTCCAGGAGGATGACCAACTTGATGAAATGTTCATTATCACTCATGGCGGGATAAGGACTTCCACCAAAATTAATGGCTTGGACACTACAAGTCTTGAAAAAGGGCACTTTTACGGAGGACAACTTTTTGAATACCGGATTTCGAATTCTCCAATCAAATCGTCATCAAGCCCCGCATTACCCTTGTCGGAGAAGACCGTCGTGGCCCGGACGGATGTTCAAGTGTTCGTCATAAGAGCCAATGAATTGAGAATTGTGGTGGAGAAATTCTTGTGGCTCTTCATCCAGGAGGAGCGTGTGTACGGTCCGGCGAGGTTTAATTCGGAGAAATGGAAACCTTGGGCAGCAAAGACTGGACATACATGCGATAACTACAGAGAAAGAGGAGGAGAGAACCAGATGCAATGGGCTGGTGGAGGCTTTGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans cNMP_binding

Protein Analysis

241

Amino Acids

27.54

Weight (kDa)

8.89

Isoelectric Point (pI)

26.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 345, 471
AcsI RAATTY 2 cut(s) 442, 563
AfaI GTAC 1 cut(s) 599
AgsI TTSAA 4 cut(s) 278, 395, 428, 518
AjnI CCWGG 2 cut(s) 300, 582
AluBI AGCT 3 cut(s) 62, 97, 199
AluI AGCT 3 cut(s) 62, 97, 199
AoxI GGCC 2 cut(s) 238, 501
ApaI GGGCCC 1 cut(s) 242
ApeKI GCWGC 2 cut(s) 97, 641
ApoI RAATTY 2 cut(s) 442, 563
AseI ATTAAT 1 cut(s) 369
AspS9I GGNCC 4 cut(s) 238, 239, 502, 602
AsuC2I CCSGG 2 cut(s) 29, 505
AsuII TTCGAA 1 cut(s) 440
AvaII GGWCC 1 cut(s) 602
BaeGI GKGCMC 3 cut(s) 195, 242, 405
BanII GRGCYC 1 cut(s) 242
BbsI GAAGAC 1 cut(s) 497
BbvI GCAGC 2 cut(s) 84, 653
BciT130I CCWGG 2 cut(s) 302, 584
BciVI GTATCC 1 cut(s) 223
BcnI CCSGG 2 cut(s) 29, 505
BfmI CTRYAG 2 cut(s) 214, 670
BfuI GTATCC 1 cut(s) 223
BisI GCNGC 2 cut(s) 98, 642
BlsI GCNGC 2 cut(s) 99, 643
Bme1390I CCNGG 4 cut(s) 29, 302, 505, 584
Bme18I GGWCC 1 cut(s) 602
BmgT120I GGNCC 4 cut(s) 238, 239, 502, 602
BmiI GGNNCC 1 cut(s) 240
BmrFI CCNGG 4 cut(s) 29, 302, 505, 584
BmsI GCATC 2 cut(s) 300, 687
BpiI GAAGAC 1 cut(s) 497
Bpu14I TTCGAA 1 cut(s) 440
BpuMI CCSGG 2 cut(s) 29, 505
BsaJI CCNNGG 1 cut(s) 635
BsaWI WCCGGW 1 cut(s) 432
BsaXI ACNNNNNCTCC 2 cut(s) 581, 611
Bse1I ACTGG 1 cut(s) 655
Bse3DI GCAATG 1 cut(s) 707
BseBI CCWGG 2 cut(s) 302, 584
BseDI CCNNGG 1 cut(s) 635
BseGI GGATG 3 cut(s) 313, 517, 579
BseMI GCAATG 1 cut(s) 707
BseNI ACTGG 1 cut(s) 655
BseRI GAGGAG 3 cut(s) 602, 696, 699
BseSI GKGCMC 3 cut(s) 195, 242, 405
BseXI GCAGC 2 cut(s) 84, 653
BshFI GGCC 2 cut(s) 240, 503
BsiSI CCGG 4 cut(s) 28, 433, 505, 605
BslFI GGGAC 1 cut(s) 165
BsmFI GGGAC 1 cut(s) 165
BsnI GGCC 2 cut(s) 240, 503
Bsp119I TTCGAA 1 cut(s) 440
Bsp120I GGGCCC 1 cut(s) 238
Bsp1286I GDGCHC 3 cut(s) 195, 242, 405
BspACI CCGC 2 cut(s) 345, 471
BspANI GGCC 2 cut(s) 240, 503
BspLI GGNNCC 1 cut(s) 240
BspQI GCTCTTC 1 cut(s) 581
BspT104I TTCGAA 1 cut(s) 440
BsrDI GCAATG 1 cut(s) 707
BsrI ACTGG 1 cut(s) 655
BssECI CCNNGG 1 cut(s) 635
BssT1I CCWWGG 1 cut(s) 635
Bst2UI CCWGG 2 cut(s) 302, 584
Bst4CI ACNGT 2 cut(s) 496, 602
Bst6I CTCTTC 1 cut(s) 581
BstBI TTCGAA 1 cut(s) 440
BstC8I GCNNGC 2 cut(s) 60, 201
BstF5I GGATG 3 cut(s) 313, 517, 579
BstNI CCWGG 2 cut(s) 302, 584
BstNSI RCATGY 1 cut(s) 663
BstSCI CCNGG 4 cut(s) 27, 300, 503, 582
BstSFI CTRYAG 2 cut(s) 214, 670
BstSLI GKGCMC 3 cut(s) 195, 242, 405
BstV1I GCAGC 2 cut(s) 84, 653
BstV2I GAAGAC 1 cut(s) 497
BsuI GTATCC 1 cut(s) 223
BsuRI GGCC 2 cut(s) 240, 503
BtsCI GGATG 3 cut(s) 313, 517, 579
Cac8I GCNNGC 2 cut(s) 60, 201
Cfr13I GGNCC 4 cut(s) 238, 239, 502, 602
CpoI CGGWCCG 1 cut(s) 602
CseI GACGC 1 cut(s) 192
Csp6I GTAC 1 cut(s) 598
CspCI CAANNNNNGTGG 2 cut(s) 68, 103
CspI CGGWCCG 1 cut(s) 602
CviAII CATG 3 cut(s) 188, 341, 660
CviQI GTAC 1 cut(s) 598
Eam1104I CTCTTC 1 cut(s) 581
EarI CTCTTC 1 cut(s) 581
Eco130I CCWWGG 1 cut(s) 635
Eco24I GRGCYC 1 cut(s) 242
Eco47I GGWCC 1 cut(s) 602
EcoRI GAATTC 1 cut(s) 442
EcoRII CCWGG 2 cut(s) 300, 582
EcoT14I CCWWGG 1 cut(s) 635
EcoT38I GRGCYC 1 cut(s) 242
ErhI CCWWGG 1 cut(s) 635
FaeI CATG 3 cut(s) 191, 344, 663
FaqI GGGAC 1 cut(s) 165
FatI CATG 3 cut(s) 187, 340, 659
FauI CCCGC 2 cut(s) 338, 478
Fnu4HI GCNGC 2 cut(s) 98, 642
FokI GGATG 3 cut(s) 320, 524, 566
FriOI GRGCYC 1 cut(s) 242
Fsp4HI GCNGC 2 cut(s) 98, 642
GluI GCNGC 2 cut(s) 98, 642
HaeIII GGCC 2 cut(s) 240, 503
HapII CCGG 4 cut(s) 28, 433, 505, 605
HgaI GACGC 1 cut(s) 192
Hin1II CATG 3 cut(s) 191, 344, 663
HindIII AAGCTT 1 cut(s) 197
HinfI GANTC 1 cut(s) 268
HpaII CCGG 4 cut(s) 28, 433, 505, 605
Hpy166II GTNNAC 1 cut(s) 598
Hpy188I TCNGA 3 cut(s) 51, 487, 622
Hpy188III TCNNGA 2 cut(s) 227, 392
Hpy8I GTNNAC 1 cut(s) 598
Hpy99I CGWCG 1 cut(s) 500
HpyCH4III ACNGT 2 cut(s) 496, 602
HpyCH4V TGCA 5 cut(s) 4, 21, 58, 100, 700
Hsp92II CATG 3 cut(s) 191, 344, 663
LguI GCTCTTC 1 cut(s) 581
LmnI GCTCC 3 cut(s) 12, 94, 589
Lsp1109I GCAGC 2 cut(s) 84, 653
LweI GCATC 2 cut(s) 300, 687
MaeIII GTNAC 1 cut(s) 204
MboII GAAGA 2 cut(s) 502, 568
MfeI CAATTG 2 cut(s) 121, 247
MhlI GDGCHC 3 cut(s) 195, 242, 405
MmeI TCCRAC 2 cut(s) 72, 465
MnlI CCTC 7 cut(s) 298, 407, 580, 603, 674, 677, 707
MseI TTAA 2 cut(s) 369, 615
MslI CAYNNNNRTG 1 cut(s) 81
MspI CCGG 4 cut(s) 28, 433, 505, 605
MspR9I CCNGG 4 cut(s) 29, 302, 505, 584
MunI CAATTG 2 cut(s) 121, 247
MvaI CCWGG 2 cut(s) 302, 584
NciI CCSGG 2 cut(s) 29, 505
NlaIII CATG 3 cut(s) 191, 344, 663
NlaIV GGNNCC 1 cut(s) 240
NmuCI GTSAC 1 cut(s) 204
NspI RCATGY 1 cut(s) 663
NspV TTCGAA 1 cut(s) 440
PciSI GCTCTTC 1 cut(s) 581
PfeI GAWTC 1 cut(s) 268
PfoI TCCNGGA 2 cut(s) 300, 582
PkrI GCNGC 2 cut(s) 99, 643
PshBI ATTAAT 1 cut(s) 369
Psp6I CCWGG 2 cut(s) 300, 582
PspGI CCWGG 2 cut(s) 300, 582
PspN4I GGNNCC 1 cut(s) 240
PspOMI GGGCCC 1 cut(s) 238
PspPI GGNCC 4 cut(s) 238, 239, 502, 602
RsaI GTAC 1 cut(s) 599
RsaNI GTAC 1 cut(s) 598
RseI CAYNNNNRTG 1 cut(s) 81
Rsr2I CGGWCCG 1 cut(s) 602
RsrII CGGWCCG 1 cut(s) 602
SapI GCTCTTC 1 cut(s) 581
SaqAI TTAA 2 cut(s) 369, 615
SatI GCNGC 2 cut(s) 98, 642
Sau96I GGNCC 4 cut(s) 238, 239, 502, 602
ScrFI CCNGG 4 cut(s) 29, 302, 505, 584
SduI GDGCHC 3 cut(s) 195, 242, 405
SetI ASST 5 cut(s) 64, 99, 201, 614, 637
SfaNI GCATC 2 cut(s) 300, 687
SfcI CTRYAG 2 cut(s) 214, 670
SfuI TTCGAA 1 cut(s) 440
SinI GGWCC 1 cut(s) 602
SmiMI CAYNNNNRTG 1 cut(s) 81
SsiI CCGC 2 cut(s) 345, 471
StyD4I CCNGG 4 cut(s) 27, 300, 503, 582
StyI CCWWGG 1 cut(s) 635
TaaI ACNGT 2 cut(s) 496, 602
TaqI TCGA 1 cut(s) 440
TfiI GAWTC 1 cut(s) 268
Tru1I TTAA 2 cut(s) 369, 615
Tru9I TTAA 2 cut(s) 369, 615
TseFI GTSAC 1 cut(s) 204
TseI GCWGC 2 cut(s) 97, 641
Tsp45I GTSAC 1 cut(s) 204
TspDTI ATGAA 4 cut(s) 319, 336, 555, 568
TspGWI ACGGA 2 cut(s) 426, 524
VpaK11BI GGWCC 1 cut(s) 602
VspI ATTAAT 1 cut(s) 369
XapI RAATTY 2 cut(s) 442, 563
XceI RCATGY 1 cut(s) 663
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.