Rw4G026640

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0017003
Physical Location & Seq
Reverse (-)
52855209 .. 52856441
1233 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G026640.1

Sequence Viewer

Length: 642 bp
ATGTTACAAGGGCATCTGTCAATATCCTCTCTGAGACTACATGGGCTAATCTCTCCTTTTTTTCTACTTGCTAGTCATGTGCTTGGAGCTTTTTGGTATTTATTTTCCATAGAAAGGAAAACAACTTGTTGGGTAGAAGTATGTAAAATTCAAGGTGTTGCTTGTTCTTTGTATTGCGATGACACCATGGTACTTAACCCACTCCAACTGATCAATGATTACTCTTGCTCTACAAAGACCAATAACACAGCCTTTGATTATGGAATATCCCTTCATGCTCTCGAATCGGGTGTCGTCTATTCAGATAATTTTCTACAAAAGATTTCTCTCTGCTTATGGTGGGGACTGCAAAACATAAGCTCCTTTGGTCAAAGTCTCAAAACAAATACCTATGTGTGGGAGATCTACTTTTCAATTGTCGTTTCAATTTCTGGCTTGGTACTGTTTGCATTATTTATTGGAAATATACAGACGTACTTGAATTCGCAAGCTGAAAGAGTGAAGGAAATGAAATCGAACGGGCAAGAGATTGAATTGTGGATGGACTTTCATTCACTTCCTAAGTGGCTTAAGACTCGGTTCAGGAAGTATCAGAAATATAGATGGCAAGAAAGGTATCAGCCAACTCCTCAGCATGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans cNMP_binding

Protein Analysis

213

Amino Acids

24.76

Weight (kDa)

8.48

Isoelectric Point (pI)

42.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ion_trans PF00520 21 - 166 1.6e-06 Ion transport protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 147, 481
AfaI GTAC 3 cut(s) 192, 441, 476
AfiI CCNNNNNNNGG 2 cut(s) 114, 396
AflII CTTAAG 1 cut(s) 569
AgsI TTSAA 5 cut(s) 152, 414, 426, 481, 533
AluBI AGCT 3 cut(s) 89, 360, 491
AluI AGCT 3 cut(s) 89, 360, 491
Alw26I GTCTC 2 cut(s) 28, 380
ApoI RAATTY 2 cut(s) 147, 481
ArsI GACNNNNNNTTYG 2 cut(s) 276, 308
BbvCI CCTCAGC 1 cut(s) 630
BccI CCATC 2 cut(s) 535, 597
BclI TGATCA 1 cut(s) 210
BcoDI GTCTC 2 cut(s) 28, 380
BfaI CTAG 1 cut(s) 72
BfrI CTTAAG 1 cut(s) 569
BglII AGATCT 1 cut(s) 402
BmsI GCATC 1 cut(s) 22
Bpu10I CCTNAGC 1 cut(s) 630
BsaJI CCNNGG 1 cut(s) 186
BsaXI ACNNNNNCTCC 2 cut(s) 344, 374
Bsc4I CCNNNNNNNGG 2 cut(s) 114, 396
BseDI CCNNGG 1 cut(s) 186
BseGI GGATG 1 cut(s) 546
BseLI CCNNNNNNNGG 2 cut(s) 114, 396
BseMII CTCAG 1 cut(s) 23
BseRI GAGGAG 1 cut(s) 618
BslFI GGGAC 1 cut(s) 357
BslI CCNNNNNNNGG 2 cut(s) 114, 396
BsmAI GTCTC 2 cut(s) 28, 380
BsmFI GGGAC 1 cut(s) 357
Bsp143I GATC 2 cut(s) 210, 402
Bsp19I CCATGG 1 cut(s) 186
BspCNI CTCAG 1 cut(s) 24
BspTI CTTAAG 1 cut(s) 569
BssECI CCNNGG 1 cut(s) 186
BssMI GATC 2 cut(s) 210, 402
BssT1I CCWWGG 1 cut(s) 186
Bst4CI ACNGT 1 cut(s) 444
BstAFI CTTAAG 1 cut(s) 569
BstC8I GCNNGC 1 cut(s) 489
BstDEI CTNAG 3 cut(s) 32, 561, 630
BstDSI CCRYGG 1 cut(s) 186
BstF5I GGATG 1 cut(s) 546
BstKTI GATC 2 cut(s) 213, 405
BstMAI GTCTC 2 cut(s) 28, 380
BstMBI GATC 2 cut(s) 210, 402
BstNSI RCATGY 1 cut(s) 638
BstX2I RGATCY 1 cut(s) 402
BstYI RGATCY 1 cut(s) 402
BtgI CCRYGG 1 cut(s) 186
BtgZI GCGATG 1 cut(s) 192
BtsCI GGATG 1 cut(s) 546
Cac8I GCNNGC 1 cut(s) 489
Csp6I GTAC 3 cut(s) 191, 440, 475
CviAII CATG 5 cut(s) 41, 77, 187, 275, 635
CviJI RGCY 8 cut(s) 46, 89, 251, 360, 435, 491, 568, 622
CviKI_1 RGCY 8 cut(s) 46, 89, 251, 360, 435, 491, 568, 622
CviQI GTAC 3 cut(s) 191, 440, 475
DdeI CTNAG 3 cut(s) 32, 561, 630
DpnI GATC 2 cut(s) 212, 404
DpnII GATC 2 cut(s) 210, 402
Eco130I CCWWGG 1 cut(s) 186
EcoRI GAATTC 1 cut(s) 481
EcoT14I CCWWGG 1 cut(s) 186
ErhI CCWWGG 1 cut(s) 186
FaeI CATG 5 cut(s) 44, 80, 190, 278, 638
FaqI GGGAC 1 cut(s) 357
FatI CATG 5 cut(s) 40, 76, 186, 274, 634
FbaI TGATCA 1 cut(s) 210
FokI GGATG 1 cut(s) 553
FspBI CTAG 1 cut(s) 72
Hin1II CATG 5 cut(s) 44, 80, 190, 278, 638
HinfI GANTC 2 cut(s) 284, 574
Hpy188I TCNGA 3 cut(s) 33, 304, 594
Hpy188III TCNNGA 2 cut(s) 281, 583
HpyAV CCTTC 2 cut(s) 281, 496
HpyCH4III ACNGT 1 cut(s) 444
HpyCH4IV ACGT 1 cut(s) 473
HpyCH4V TGCA 2 cut(s) 349, 449
HpyF3I CTNAG 3 cut(s) 32, 561, 630
HpySE526I ACGT 1 cut(s) 473
Hsp92II CATG 5 cut(s) 44, 80, 190, 278, 638
Ksp22I TGATCA 1 cut(s) 210
Kzo9I GATC 2 cut(s) 210, 402
LmnI GCTCC 2 cut(s) 86, 365
LpnPI CCDG 2 cut(s) 417, 568
LweI GCATC 1 cut(s) 22
MaeI CTAG 1 cut(s) 72
MaeII ACGT 1 cut(s) 473
MaeIII GTNAC 1 cut(s) 3
MalI GATC 2 cut(s) 212, 404
MboI GATC 2 cut(s) 210, 402
MfeI CAATTG 1 cut(s) 414
MflI RGATCY 1 cut(s) 402
MluCI AATT 6 cut(s) 147, 307, 414, 426, 481, 533
MlyI GAGTC 1 cut(s) 568
MmeI TCCRAC 1 cut(s) 229
MnlI CCTC 2 cut(s) 37, 639
MseI TTAA 2 cut(s) 195, 570
MspCI CTTAAG 1 cut(s) 569
MunI CAATTG 1 cut(s) 414
NcoI CCATGG 1 cut(s) 186
NdeII GATC 2 cut(s) 210, 402
NlaIII CATG 5 cut(s) 44, 80, 190, 278, 638
NspI RCATGY 1 cut(s) 638
PfeI GAWTC 1 cut(s) 284
PleI GAGTC 1 cut(s) 568
PpsI GAGTC 1 cut(s) 568
PsuI RGATCY 1 cut(s) 402
RsaI GTAC 3 cut(s) 192, 441, 476
RsaNI GTAC 3 cut(s) 191, 440, 475
SaqAI TTAA 2 cut(s) 195, 570
Sau3AI GATC 2 cut(s) 210, 402
SchI GAGTC 1 cut(s) 568
SetI ASST 7 cut(s) 91, 157, 362, 392, 476, 493, 617
SfaNI GCATC 1 cut(s) 22
SmlI CTYRAG 1 cut(s) 569
SmoI CTYRAG 1 cut(s) 569
Sse9I AATT 6 cut(s) 147, 307, 414, 426, 481, 533
SspMI CTAG 1 cut(s) 72
StyI CCWWGG 1 cut(s) 186
TaaI ACNGT 1 cut(s) 444
TaiI ACGT 1 cut(s) 476
TaqI TCGA 2 cut(s) 282, 515
TasI AATT 6 cut(s) 147, 307, 414, 426, 481, 533
TfiI GAWTC 1 cut(s) 284
Tru1I TTAA 2 cut(s) 195, 570
Tru9I TTAA 2 cut(s) 195, 570
TspDTI ATGAA 3 cut(s) 263, 524, 539
Vha464I CTTAAG 1 cut(s) 569
XapI RAATTY 2 cut(s) 147, 481
XceI RCATGY 1 cut(s) 638
XspI CTAG 1 cut(s) 72
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.