Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005337

Physical Location & Seq

Genomic Coordinates Forward (+)

61119932 .. 61129507

Gene Structure 9576 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGTGGCGCTTAGTTGCAGATCTTATGAATGACCTTGCAATGTTGATGGACCTTGTTTCGCCTTTGTTTCCATCTGCTTTTGTGTTTGTGGTCTGTCTAGGAAGCCTATCGAGATCATTCACCGGTGTTGCAAGTGGAGCAACTAGAGCTGCTTTGACACAACATTTTGCTCTTCAGAATAACGCTGCAGATATATCTGCCAAGGTACAGCACAGTGTTTCTATCCATTATTATCTCGTTTCGTCAATTAACCATTGTTGTACACTAATAGGAAGGAAGTCAAGAAACAATGGCAACAATGATTGGTATGGCACTGGGCATGCTTCTTGCTCGTGTAACTATGGAGCACCCACTAGCTATTTGGTTTTCTTTTTTGTCTCTCACCCAAACTACAAGGCTGTCCGGTGCCTTGCATTAAATTCTTTGAACCCTCAGAGGTGCTCAATTCTTTTGCAGCATTTTATGAAAACCGGCAAAGTTCTCTCACCTGAACAGGTATCTAAGATGGAGCATGTTTTACCCATATGGGCATCTTCATGGAGCTCAAAGAATTCAGAGTCGATGAATGTGGATATATCTCTAGGTGTCAGGGTCTCCTCACTAAATCACCTGGAACTGAGGGAGTTATTGCATTCTGCGGGCTTTCATTACAAGAAAGCCAAGTACTTGCTGGTGGAAAGGAAAGGAATTGTCTGCATTGTTATGCACAAAGATTCTGCTGCCACAGATGTCTTGCAGTCATTTTTTCATGCAAATGCAATGGCAAATCTAATGGATAAACACCGAAGTCTTCATTCTGAAAGCCAATCATGGATGGATAAACATTATGAAGCTTTCATTCAAAAGTTAAAGGTATCTGGTTGGAAAACAGAACGTCTTTTATCACCAACGATCATTTGGAAGGCAAACTGGATCTGTGGGTCTTCTGATGGCAAGATTGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF647

Protein Analysis

314

Amino Acids

35.13

Weight (kDa)

9.17

Isoelectric Point (pI)

41.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UVB_sens_prot	PF04884	1 - 157	2e-32	Vitamin B6 photo-protection and homoeostasis domain
UVB_sens_C	PF24160	160 - 304	3.5e-11	Root UVB sensitive protein, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005337)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13770 AT1G13770 AT1G13770 AT1G13770
fragaria_vesca	FvH4_4g30090 FvH4_4g30090 FvH4_4g30090 FvH4_4g30090 FvH4_4g30090
malus_domestica	MD16G1061400.v1.1
prunus_persica	Prupe.1G286700_v2.0.a1 Prupe.1G286700_v2.0.a1 Prupe.1G286700_v2.0.a1 Prupe.1G286700_v2.0.a1 Prupe.1G286700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0438371 RchiOBHm_Chr4g0438391
rosa_multiflora	Rmu_sc0002327.1_g000026
rosa_roxburghii	Rroxscaffold_5G00379420
rosa_rugosa	Rorug04G0309300 Rorug04G0309400 Rorug04G0309500 Rorug04G0309600
rosa_samantha	Rh4AG360400 Rh4BG371300 Rh4CG385300 Rh4DG366200
rosa_wichuraiana	Rw0G006500 Rw0G016450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	405
AciI	CCGC	1 cut(s)	638
AclWI	GGATC	1 cut(s)	920
AcsI	RAATTY	2 cut(s)	418, 550
AcuI	CTGAAG	1 cut(s)	158
AfaI	GTAC	3 cut(s)	207, 262, 665
AgeI	ACCGGT	1 cut(s)	122
AgsI	TTSAA	2 cut(s)	427, 842
AjnI	CCWGG	1 cut(s)	609
AluBI	AGCT	4 cut(s)	149, 357, 543, 833
AluI	AGCT	4 cut(s)	149, 357, 543, 833
Alw21I	GWGCWC	3 cut(s)	349, 443, 545
Alw26I	GTCTC	2 cut(s)	382, 598
AlwI	GGATC	1 cut(s)	920
ApeKI	GCWGC	4 cut(s)	149, 185, 454, 719
ApoI	RAATTY	2 cut(s)	418, 550
AsiGI	ACCGGT	1 cut(s)	122
AspLEI	GCGC	1 cut(s)	9
AspS9I	GGNCC	1 cut(s)	49
AsuHPI	GGTGA	5 cut(s)	112, 374, 477, 599, 876
AvaII	GGWCC	1 cut(s)	49
BanI	GGYRCC	1 cut(s)	405
BanII	GRGCYC	1 cut(s)	545
BauI	CACGAG	1 cut(s)	331
BbsI	GAAGAC	2 cut(s)	782, 915
Bbv12I	GWGCWC	3 cut(s)	349, 443, 545
BbvI	GCAGC	4 cut(s)	136, 172, 466, 706
BccI	CCATC	5 cut(s)	40, 79, 499, 808, 923
BciT130I	CCWGG	1 cut(s)	611
BcoDI	GTCTC	2 cut(s)	382, 598
BfaI	CTAG	5 cut(s)	98, 144, 354, 581, 943
BfmI	CTRYAG	1 cut(s)	186
BfoI	RGCGCY	1 cut(s)	10
BglII	AGATCT	1 cut(s)	19
BisI	GCNGC	4 cut(s)	150, 186, 455, 720
BlsI	GCNGC	4 cut(s)	151, 187, 456, 721
BmcAI	AGTACT	1 cut(s)	665
Bme1390I	CCNGG	1 cut(s)	611
Bme18I	GGWCC	1 cut(s)	49
BmgT120I	GGNCC	1 cut(s)	49
BmiI	GGNNCC	1 cut(s)	407
BmrFI	CCNGG	1 cut(s)	611
BmrI	ACTGGG	1 cut(s)	324
BmsI	GCATC	1 cut(s)	539
BmuI	ACTGGG	1 cut(s)	324
BpiI	GAAGAC	2 cut(s)	782, 915
BsaI	GGTCTC	1 cut(s)	598
BsaJI	CCNNGG	1 cut(s)	201
BsaWI	WCCGGW	2 cut(s)	122, 402
Bse118I	RCCGGY	2 cut(s)	122, 470
Bse1I	ACTGG	2 cut(s)	319, 914
Bse3DI	GCAATG	2 cut(s)	45, 765
BseBI	CCWGG	1 cut(s)	611
BseDI	CCNNGG	1 cut(s)	201
BseGI	GGATG	1 cut(s)	819
BseMI	GCAATG	2 cut(s)	45, 765
BseMII	CTCAG	2 cut(s)	446, 608
BseNI	ACTGG	2 cut(s)	319, 914
BseRI	GAGGAG	1 cut(s)	586
BseXI	GCAGC	4 cut(s)	136, 172, 466, 706
BshNI	GGYRCC	1 cut(s)	405
BshTI	ACCGGT	1 cut(s)	122
BsiHKAI	GWGCWC	3 cut(s)	349, 443, 545
BsiSI	CCGG	3 cut(s)	123, 403, 471
BsmAI	GTCTC	2 cut(s)	382, 598
BsmI	GAATGC	1 cut(s)	631
Bso31I	GGTCTC	1 cut(s)	598
Bsp1286I	GDGCHC	3 cut(s)	349, 443, 545
Bsp1407I	TGTACA	1 cut(s)	260
Bsp143I	GATC	4 cut(s)	19, 113, 891, 912
BspACI	CCGC	1 cut(s)	638
BspCNI	CTCAG	2 cut(s)	445, 609
BspLI	GGNNCC	1 cut(s)	407
BspMAI	CTGCAG	1 cut(s)	190
BspPI	GGATC	1 cut(s)	920
BspQI	GCTCTTC	1 cut(s)	177
BspT107I	GGYRCC	1 cut(s)	405
BspTNI	GGTCTC	1 cut(s)	598
BsrDI	GCAATG	2 cut(s)	45, 765
BsrFI	RCCGGY	2 cut(s)	122, 470
BsrGI	TGTACA	1 cut(s)	260
BsrI	ACTGG	2 cut(s)	319, 914
BssAI	RCCGGY	2 cut(s)	122, 470
BssECI	CCNNGG	1 cut(s)	201
BssMI	GATC	4 cut(s)	19, 113, 891, 912
BssSI	CACGAG	1 cut(s)	331
BssT1I	CCWWGG	1 cut(s)	201
Bst2BI	CACGAG	1 cut(s)	331
Bst2UI	CCWGG	1 cut(s)	611
Bst4CI	ACNGT	1 cut(s)	215
Bst6I	CTCTTC	1 cut(s)	177
BstAUI	TGTACA	1 cut(s)	260
BstC8I	GCNNGC	2 cut(s)	321, 640
BstDEI	CTNAG	4 cut(s)	10, 432, 501, 617
BstF5I	GGATG	1 cut(s)	819
BstH2I	RGCGCY	1 cut(s)	10
BstHHI	GCGC	1 cut(s)	9
BstKTI	GATC	4 cut(s)	22, 116, 894, 915
BstMAI	GTCTC	2 cut(s)	382, 598
BstMBI	GATC	4 cut(s)	19, 113, 891, 912
BstMWI	GCNNNNNNNGC	2 cut(s)	137, 146
BstNI	CCWGG	1 cut(s)	611
BstNSI	RCATGY	2 cut(s)	323, 515
BstSCI	CCNGG	1 cut(s)	609
BstSFI	CTRYAG	1 cut(s)	186
BstV1I	GCAGC	4 cut(s)	136, 172, 466, 706
BstV2I	GAAGAC	2 cut(s)	782, 915
BstX2I	RGATCY	2 cut(s)	19, 912
BstYI	RGATCY	2 cut(s)	19, 912
BtsCI	GGATG	1 cut(s)	819
BtsIMutI	CAGTG	2 cut(s)	220, 312
Cac8I	GCNNGC	2 cut(s)	321, 640
CfoI	GCGC	1 cut(s)	9
Cfr10I	RCCGGY	2 cut(s)	122, 470
Cfr13I	GGNCC	1 cut(s)	49
Csp6I	GTAC	3 cut(s)	206, 261, 664
CspAI	ACCGGT	1 cut(s)	122
CviAII	CATG	5 cut(s)	320, 512, 537, 749, 810
CviJI	RGCY	9 cut(s)	105, 149, 357, 398, 543, 642, 659, 804, 833
CviKI_1	RGCY	9 cut(s)	105, 149, 357, 398, 543, 642, 659, 804, 833
CviQI	GTAC	3 cut(s)	206, 261, 664
DdeI	CTNAG	4 cut(s)	10, 432, 501, 617
DpnI	GATC	4 cut(s)	21, 115, 893, 914
DpnII	GATC	4 cut(s)	19, 113, 891, 912
Eam1104I	CTCTTC	1 cut(s)	177
EarI	CTCTTC	1 cut(s)	177
Ecl136II	GAGCTC	1 cut(s)	543
Eco130I	CCWWGG	1 cut(s)	201
Eco24I	GRGCYC	1 cut(s)	545
Eco31I	GGTCTC	1 cut(s)	598
Eco47I	GGWCC	1 cut(s)	49
Eco53kI	GAGCTC	1 cut(s)	543
Eco57I	CTGAAG	1 cut(s)	158
EcoICRI	GAGCTC	1 cut(s)	543
EcoRI	GAATTC	1 cut(s)	550
EcoRII	CCWGG	1 cut(s)	609
EcoT14I	CCWWGG	1 cut(s)	201
EcoT38I	GRGCYC	1 cut(s)	545
ErhI	CCWWGG	1 cut(s)	201
FaeI	CATG	5 cut(s)	323, 515, 540, 752, 813
FatI	CATG	5 cut(s)	319, 511, 536, 748, 809
FauI	CCCGC	1 cut(s)	631
FauNDI	CATATG	1 cut(s)	524
Fnu4HI	GCNGC	4 cut(s)	150, 186, 455, 720
FokI	GGATG	1 cut(s)	826
FriOI	GRGCYC	1 cut(s)	545
Fsp4HI	GCNGC	4 cut(s)	150, 186, 455, 720
FspBI	CTAG	5 cut(s)	98, 144, 354, 581, 943
GlaI	GCGC	1 cut(s)	8
GluI	GCNGC	4 cut(s)	150, 186, 455, 720
HaeII	RGCGCY	1 cut(s)	10
HapII	CCGG	3 cut(s)	123, 403, 471
HhaI	GCGC	1 cut(s)	9
Hin1II	CATG	5 cut(s)	323, 515, 540, 752, 813
Hin6I	GCGC	1 cut(s)	7
HinP1I	GCGC	1 cut(s)	7
HindIII	AAGCTT	1 cut(s)	831
HinfI	GANTC	2 cut(s)	557, 713
HpaII	CCGG	3 cut(s)	123, 403, 471
HphI	GGTGA	5 cut(s)	112, 374, 477, 599, 876
Hpy166II	GTNNAC	1 cut(s)	263
Hpy188I	TCNGA	5 cut(s)	177, 435, 556, 799, 928
Hpy188III	TCNNGA	2 cut(s)	111, 282
Hpy8I	GTNNAC	1 cut(s)	263
HpyAV	CCTTC	2 cut(s)	267, 895
HpyCH4III	ACNGT	1 cut(s)	215
HpyCH4IV	ACGT	1 cut(s)	874
HpyF10VI	GCNNNNNNNGC	2 cut(s)	137, 146
HpyF3I	CTNAG	4 cut(s)	10, 432, 501, 617
HpySE526I	ACGT	1 cut(s)	874
Hsp92II	CATG	5 cut(s)	323, 515, 540, 752, 813
HspAI	GCGC	1 cut(s)	7
Kzo9I	GATC	4 cut(s)	19, 113, 891, 912
LguI	GCTCTTC	1 cut(s)	177
LmnI	GCTCC	4 cut(s)	137, 344, 508, 540
Lsp1109I	GCAGC	4 cut(s)	136, 172, 466, 706
LweI	GCATC	1 cut(s)	539
MaeI	CTAG	5 cut(s)	98, 144, 354, 581, 943
MaeII	ACGT	1 cut(s)	874
MaeIII	GTNAC	1 cut(s)	335
MalI	GATC	4 cut(s)	21, 115, 893, 914
MboI	GATC	4 cut(s)	19, 113, 891, 912
MboII	GAAGA	4 cut(s)	164, 525, 782, 915
MflI	RGATCY	2 cut(s)	19, 912
MhlI	GDGCHC	3 cut(s)	349, 443, 545
MluCI	AATT	5 cut(s)	246, 418, 444, 550, 687
MlyI	GAGTC	1 cut(s)	566
MmeI	TCCRAC	1 cut(s)	842
MnlI	CCTC	4 cut(s)	429, 441, 607, 612
MseI	TTAA	3 cut(s)	249, 416, 848
MslI	CAYNNNNRTG	3 cut(s)	535, 701, 753
MspI	CCGG	3 cut(s)	123, 403, 471
MspR9I	CCNGG	1 cut(s)	611
Mva1269I	GAATGC	1 cut(s)	631
MvaI	CCWGG	1 cut(s)	611
MwoI	GCNNNNNNNGC	2 cut(s)	137, 146
NdeI	CATATG	1 cut(s)	524
NdeII	GATC	4 cut(s)	19, 113, 891, 912
NlaIII	CATG	5 cut(s)	323, 515, 540, 752, 813
NlaIV	GGNNCC	1 cut(s)	407
NspI	RCATGY	2 cut(s)	323, 515
PaeI	GCATGC	1 cut(s)	323
PciSI	GCTCTTC	1 cut(s)	177
PctI	GAATGC	1 cut(s)	631
PfeI	GAWTC	1 cut(s)	713
PinAI	ACCGGT	1 cut(s)	122
PkrI	GCNGC	4 cut(s)	151, 187, 456, 721
PleI	GAGTC	1 cut(s)	565
PpsI	GAGTC	1 cut(s)	565
Psp124BI	GAGCTC	1 cut(s)	545
Psp6I	CCWGG	1 cut(s)	609
PspGI	CCWGG	1 cut(s)	609
PspN4I	GGNNCC	1 cut(s)	407
PspPI	GGNCC	1 cut(s)	49
PstI	CTGCAG	1 cut(s)	190
PsuI	RGATCY	2 cut(s)	19, 912
RsaI	GTAC	3 cut(s)	207, 262, 665
RsaNI	GTAC	3 cut(s)	206, 261, 664
RseI	CAYNNNNRTG	3 cut(s)	535, 701, 753
SacI	GAGCTC	1 cut(s)	545
SapI	GCTCTTC	1 cut(s)	177
SaqAI	TTAA	3 cut(s)	249, 416, 848
SatI	GCNGC	4 cut(s)	150, 186, 455, 720
Sau3AI	GATC	4 cut(s)	19, 113, 891, 912
Sau96I	GGNCC	1 cut(s)	49
ScaI	AGTACT	1 cut(s)	665
SchI	GAGTC	1 cut(s)	566
ScrFI	CCNGG	1 cut(s)	611
SduI	GDGCHC	3 cut(s)	349, 443, 545
SfaNI	GCATC	1 cut(s)	539
SfcI	CTRYAG	1 cut(s)	186
SgrAI	CRCCGGYG	1 cut(s)	122
SinI	GGWCC	1 cut(s)	49
SmiMI	CAYNNNNRTG	3 cut(s)	535, 701, 753
SphI	GCATGC	1 cut(s)	323
Sse9I	AATT	5 cut(s)	246, 418, 444, 550, 687
SsiI	CCGC	1 cut(s)	638
SspMI	CTAG	5 cut(s)	98, 144, 354, 581, 943
SstI	GAGCTC	1 cut(s)	545
StyD4I	CCNGG	1 cut(s)	609
StyI	CCWWGG	1 cut(s)	201
TaaI	ACNGT	1 cut(s)	215
TaiI	ACGT	1 cut(s)	877
TaqI	TCGA	2 cut(s)	110, 560
TasI	AATT	5 cut(s)	246, 418, 444, 550, 687
TatI	WGTACW	2 cut(s)	260, 663
TfiI	GAWTC	1 cut(s)	713
Tru1I	TTAA	3 cut(s)	249, 416, 848
Tru9I	TTAA	3 cut(s)	249, 416, 848
TscAI	CASTG	2 cut(s)	220, 319
TseI	GCWGC	4 cut(s)	149, 185, 454, 719
TspDTI	ATGAA	9 cut(s)	41, 479, 525, 578, 635, 737, 782, 826, 843
TspRI	CASTG	2 cut(s)	220, 319
VpaK11BI	GGWCC	1 cut(s)	49
XapI	RAATTY	2 cut(s)	418, 550
XceI	RCATGY	2 cut(s)	323, 515
XcmI	CCANNNNNNNNNTGG	3 cut(s)	358, 667, 894
XspI	CTAG	5 cut(s)	98, 144, 354, 581, 943
ZrmI	AGTACT	1 cut(s)	665

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.