RchiOBHm_Chr4g0444421

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0016321
Physical Location & Seq
Reverse (-)
65164420 .. 65165989
1570 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 324 bp
ATGGCATTGCACCGCTCCTGTGGGCCTCTCATTTCGAGCCCATTACCGACTCCCGCCACAACTCCAACCTCGACCATTCTCATTCATTCATGCCCGCCAACTGTTTGTATTAATGCCAGAGTCAGAAACACCACCACAAAGCCACTAAGAGCCACCGCCAGCACACCCCAGAAATACGTGTACCCGGACCCAATTCCGGAATTTGCAGAATCCGAGACCCACAAGTTCAGAGCTGAGCTTTCCAGGAAGCTATTGAAGTACAAGGCGACTTTTGGGGATGACTTCAGTAGTGTCATTGACGTATGCGCCGAGTACAATAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

107

Amino Acids

11.8

Weight (kDa)

8.76

Isoelectric Point (pI)

49.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016321)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g34960
malus_domestica MD13G1087300.v1.1 MD16G1087800.v1.1
prunus_persica Prupe.1G258900_v2.0.a1
rosa_chinensis RchiOBHm_Chr4g0444421
rosa_laevigata RLG00000005831
rosa_roxburghii Rroxscaffold_5G00384950
rosa_rugosa Rorug04G0353000
rosa_samantha Rh4AG413000 Rh4AG413100 Rh4BG424500 Rh4BG424600 Rh4CG438900 Rh4DG419900
rosa_wichuraiana Rw4G035480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 15
AccIII TCCGGA 1 cut(s) 196
AciI CCGC 4 cut(s) 13, 54, 95, 156
AcsI RAATTY 1 cut(s) 200
AcuI CTGAAG 1 cut(s) 268
AfaI GTAC 3 cut(s) 182, 260, 314
AfiI CCNNNNNNNGG 1 cut(s) 196
AflIII ACRYGT 1 cut(s) 177
AgsI TTSAA 1 cut(s) 256
AjnI CCWGG 1 cut(s) 242
AluBI AGCT 3 cut(s) 233, 238, 250
AluI AGCT 3 cut(s) 233, 238, 250
Alw26I GTCTC 1 cut(s) 209
Aor13HI TCCGGA 1 cut(s) 196
AoxI GGCC 1 cut(s) 23
ApoI RAATTY 1 cut(s) 200
AseI ATTAAT 1 cut(s) 111
AspLEI GCGC 1 cut(s) 308
AspS9I GGNCC 2 cut(s) 23, 187
AsuC2I CCSGG 1 cut(s) 185
AvaII GGWCC 1 cut(s) 187
BanII GRGCYC 1 cut(s) 41
BciT130I CCWGG 1 cut(s) 244
BcnI CCSGG 1 cut(s) 185
BcoDI GTCTC 1 cut(s) 209
BlpI GCTNAGC 1 cut(s) 234
Bme1390I CCNGG 2 cut(s) 185, 244
Bme18I GGWCC 1 cut(s) 187
BmgT120I GGNCC 2 cut(s) 23, 187
BmiI GGNNCC 1 cut(s) 189
BmrFI CCNGG 2 cut(s) 185, 244
Bpu1102I GCTNAGC 1 cut(s) 234
BpuMI CCSGG 1 cut(s) 185
BsaAI YACGTR 1 cut(s) 178
BsaI GGTCTC 1 cut(s) 209
BsaWI WCCGGW 1 cut(s) 196
Bsc4I CCNNNNNNNGG 1 cut(s) 196
Bse3DI GCAATG 1 cut(s) 5
BseAI TCCGGA 1 cut(s) 196
BseBI CCWGG 1 cut(s) 244
BseGI GGATG 1 cut(s) 283
BseLI CCNNNNNNNGG 1 cut(s) 196
BseMI GCAATG 1 cut(s) 5
BseMII CTCAG 1 cut(s) 225
BshFI GGCC 1 cut(s) 25
BsiSI CCGG 2 cut(s) 185, 197
BslI CCNNNNNNNGG 1 cut(s) 196
BsmAI GTCTC 1 cut(s) 209
BsnI GGCC 1 cut(s) 25
Bso31I GGTCTC 1 cut(s) 209
Bsp1286I GDGCHC 1 cut(s) 41
Bsp13I TCCGGA 1 cut(s) 196
Bsp1720I GCTNAGC 1 cut(s) 234
BspACI CCGC 4 cut(s) 13, 54, 95, 156
BspANI GGCC 1 cut(s) 25
BspCNI CTCAG 1 cut(s) 226
BspEI TCCGGA 1 cut(s) 196
BspLI GGNNCC 1 cut(s) 189
BspTNI GGTCTC 1 cut(s) 209
BsrBI CCGCTC 1 cut(s) 15
BsrDI GCAATG 1 cut(s) 5
Bst2UI CCWGG 1 cut(s) 244
Bst4CI ACNGT 1 cut(s) 103
BstBAI YACGTR 1 cut(s) 178
BstC8I GCNNGC 2 cut(s) 95, 160
BstDEI CTNAG 2 cut(s) 146, 234
BstF5I GGATG 1 cut(s) 283
BstHHI GCGC 1 cut(s) 308
BstMAI GTCTC 1 cut(s) 209
BstNI CCWGG 1 cut(s) 244
BstSCI CCNGG 2 cut(s) 183, 242
BsuRI GGCC 1 cut(s) 25
BtsCI GGATG 1 cut(s) 283
Cac8I GCNNGC 2 cut(s) 95, 160
CfoI GCGC 1 cut(s) 308
Cfr13I GGNCC 2 cut(s) 23, 187
Csp6I GTAC 3 cut(s) 181, 259, 313
CviAII CATG 1 cut(s) 90
CviJI RGCY 7 cut(s) 25, 39, 142, 152, 233, 238, 250
CviKI_1 RGCY 7 cut(s) 25, 39, 142, 152, 233, 238, 250
CviQI GTAC 3 cut(s) 181, 259, 313
DdeI CTNAG 2 cut(s) 146, 234
Eco24I GRGCYC 1 cut(s) 41
Eco31I GGTCTC 1 cut(s) 209
Eco47I GGWCC 1 cut(s) 187
Eco57I CTGAAG 1 cut(s) 268
EcoRII CCWGG 1 cut(s) 242
EcoT38I GRGCYC 1 cut(s) 41
FaeI CATG 1 cut(s) 93
FaiI YATR 2 cut(s) 91, 304
FatI CATG 1 cut(s) 89
FauI CCCGC 2 cut(s) 61, 102
FokI GGATG 1 cut(s) 290
FriOI GRGCYC 1 cut(s) 41
GlaI GCGC 1 cut(s) 307
HaeIII GGCC 1 cut(s) 25
HapII CCGG 2 cut(s) 185, 197
HhaI GCGC 1 cut(s) 308
Hin1II CATG 1 cut(s) 93
Hin6I GCGC 1 cut(s) 306
HinP1I GCGC 1 cut(s) 306
HinfI GANTC 3 cut(s) 49, 120, 209
HpaII CCGG 2 cut(s) 185, 197
Hpy166II GTNNAC 1 cut(s) 181
Hpy188I TCNGA 3 cut(s) 125, 214, 230
Hpy188III TCNNGA 1 cut(s) 197
Hpy8I GTNNAC 1 cut(s) 181
HpyCH4III ACNGT 1 cut(s) 103
HpyCH4IV ACGT 2 cut(s) 177, 300
HpyCH4V TGCA 2 cut(s) 10, 206
HpyF3I CTNAG 2 cut(s) 146, 234
HpySE526I ACGT 2 cut(s) 177, 300
Hsp92II CATG 1 cut(s) 93
HspAI GCGC 1 cut(s) 306
Kpn2I TCCGGA 1 cut(s) 196
LmnI GCTCC 1 cut(s) 20
LpnPI CCDG 8 cut(s) 31, 130, 172, 182, 198, 210, 229, 256
MaeII ACGT 2 cut(s) 177, 300
MbiI CCGCTC 1 cut(s) 15
MhlI GDGCHC 1 cut(s) 41
MluCI AATT 3 cut(s) 192, 200, 319
MlyI GAGTC 2 cut(s) 43, 129
MmeI TCCRAC 1 cut(s) 89
MnlI CCTC 2 cut(s) 36, 79
MroI TCCGGA 1 cut(s) 196
MseI TTAA 1 cut(s) 111
MspI CCGG 2 cut(s) 185, 197
MspR9I CCNGG 2 cut(s) 185, 244
MvaI CCWGG 1 cut(s) 244
NciI CCSGG 1 cut(s) 185
NlaIII CATG 1 cut(s) 93
NlaIV GGNNCC 1 cut(s) 189
PcsI WCGNNNNNNNCGW 1 cut(s) 306
PfeI GAWTC 1 cut(s) 209
PfoI TCCNGGA 1 cut(s) 242
PleI GAGTC 2 cut(s) 43, 128
PpsI GAGTC 2 cut(s) 43, 128
Ppu21I YACGTR 1 cut(s) 178
PshBI ATTAAT 1 cut(s) 111
Psp6I CCWGG 1 cut(s) 242
PspGI CCWGG 1 cut(s) 242
PspN4I GGNNCC 1 cut(s) 189
PspPI GGNCC 2 cut(s) 23, 187
RsaI GTAC 3 cut(s) 182, 260, 314
RsaNI GTAC 3 cut(s) 181, 259, 313
SaqAI TTAA 1 cut(s) 111
Sau96I GGNCC 2 cut(s) 23, 187
SchI GAGTC 2 cut(s) 43, 129
ScrFI CCNGG 2 cut(s) 185, 244
SduI GDGCHC 1 cut(s) 41
SetI ASST 6 cut(s) 71, 180, 235, 240, 252, 303
SinI GGWCC 1 cut(s) 187
Sse9I AATT 3 cut(s) 192, 200, 319
SsiI CCGC 4 cut(s) 13, 54, 95, 156
StyD4I CCNGG 2 cut(s) 183, 242
TaaI ACNGT 1 cut(s) 103
TaiI ACGT 2 cut(s) 180, 303
TaqI TCGA 2 cut(s) 35, 71
TasI AATT 3 cut(s) 192, 200, 319
TatI WGTACW 2 cut(s) 258, 312
TfiI GAWTC 1 cut(s) 209
Tru1I TTAA 1 cut(s) 111
Tru9I TTAA 1 cut(s) 111
TspDTI ATGAA 2 cut(s) 74, 78
VpaK11BI GGWCC 1 cut(s) 187
VspI ATTAAT 1 cut(s) 111
XapI RAATTY 1 cut(s) 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.