Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008285

Physical Location & Seq

Genomic Coordinates Reverse (-)

272686 .. 277836

Gene Structure 5151 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2262 bp

ATGCAATGCGAAAAGACAATACCACCCTTGAGCTTTGGCCTCTCTCAAAATCTTCTAGATCACGCATTGTGTCAGTATTTTTACAAAGTCCCCTGTCTCAAATCCTCCCTCCTCCAATTTCAAATCCCCAGAAAAAGTCAGAGGTTACTTTCTTCCTTGTACGATTACTTGCTCAGAAGAATCAGAATCAGAAGCAGAAGAAGAAAAATGTGTGGGATATTTGCGTACCTGAATTACAACGTGAACCGAGAGAGGAGTTATATTCTTCAGGTGCTATTCAATGGCCTCCGGCGATTGGAGTACCGGGGATACGATTCCGCCGGAATTTCGATCGATCATTCCTCCTCTGATCCCAAAACCTCCTCTCTCCCTCCCTCTCTCGTTTTCCGCCAGGAGGGAAACATCGAGTCGCTCGTCAAATCCGTCTACCAAGAGGTGGCTGAAACAGACCTAAATTTGAAGCAATGTTTCTCTCACCATGCTGGAATAGCACATACCCGGTGGGCCACTCATGGAGAGCCCGCTCCAAGGAACAGCCACCCTCAGAGCTCTGATCCTGGAAATGAATTTTTGGTCGTTCACAATGGAGTTATTACTAATTACGAGGCCTTAAAGGGCACTCTAGTTCGGCATGGATTTACCTTTCAATCTGAAACAGACACAGAAGTTATTCCAAAGCTTGCCAAATATGTCTTTGATAAAGCTAAAGAAGGAGAAGGTGACCAGACTATCACATTTAGTCAAGTAGTGCATGAGGTTATGAGGCATCTTGAAGGAGCCTATGCGCTGATTTTTAAAAGCTGGCATTATCCAAATGAGTTGATTGCTTGTAAACGTGGCAGTCCATTGCTCCTTGGTGTGAAAGAACTTAATGAAAATGCTAGCAATGGTTCTGCATTTCATGATGATAATTTCCTTTCAAAAAGTGGGCATCCTAAAGAACTCTTCTTGTCCAGTGATGCAAATGCCGTAGTTGAACACACCAAAAAGGTTTTGGTGATTGAGGATGGTGAAGTGGTTCATCTTAAGGATGGACACGTGTCAATCCTAAAGTTTGATAAAGAAAAGCATGGTGGCCTTTCAAAAGTTGCAGCAGTACAACGAGCATTGTCCATTCTTGAGATGGAGGTTGAACAAATAAATAAAGGAAATTTTGAACACTACATGCAGAAAGAAATTCATGAGCAGCCTGAATCTCTAACTACCACAATGAGGGGTAGGCTTTTACGTGGTGGTTCCTGCAAAGCCAAGACTGTTCTCCTTGGCGGACTGAAGGACCACCTTAAAACAATTAGGCGAAGCAGGCGAATTGTTTTCATTGGCTGTGGTACAAGCTACAATGCTGCTTTAGCTGCGAGACCTATCTTGGAAGAACTTTCAGGTATCCCTGTTACAATGGAAATTGCTAGTGATCTGTTGGATCGGCAAGGACCTATTTACAGAGAAGATACAGCTGTGTTTGTCAGTCAATCTGGTGAAACAGCAGATACTTTGAGTGCATTGGAATATGCTTCAGAAAATGGTGCATTATGTGTTGGCATAACAAATACCGTTGGTAGTGCAATAGCCCGTAACACACACTGTGGTGTTCATATAAATGCTGGTGCTGAGATTGGAGTGGCAAGCACCAAGGCTTACACAAGTCAAATAGTGGTGATGGCTATGCTTGCCCTAGCAATCGGAGGTGACACAATTTCCAATCAAGCAAGAAGAGAGGCTATAATTGACGGTTTATTTGACCTGCCCAACAAAGTCAGAGAGGTCCTGAAGCTTGACCAGGTAATGAAGGATCTTGCAAAACAATTGATAGCAGAGCAATCACTTCTTGTTTTTGGGAGAGGATACAACTATGCATCGGCTTTGGAGGGTGCTTTGAAGGTAAAGGAAGTAGCACTCATGCATAGTGAAGGAATACTTGCCGGTGAAATGAAACATGGTCCTTTGGCTTTAGTTGATGAAAATCTCCCAACTTTTGTGATTGCTACCCGTGATGCTTGCTTCAGTAAGCAGCAATCAGTTATTCAGCAGCTTCATGCCCGCAAAGGTCGTCTGATTGTAATGTGTTCGAAAGGAGATGCTGCATCTGTTTGCCCTGCGGAATGGGAGTCTTGTCGAGTGATTGAAGTTCCTCAGCTCGAGGATTGTCTTCAACCAGTAGTTAATATAGTTCCCTTGCAGCTGCTAGCATACCATCTCACAGTTTTAAGAGGTTTTAATGTGGATCAGCCTCGGAATCTTGCAAAGAGTGTGACAACCCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004360 GO:0006002 GO:0006040 GO:0006047 GO:0006139 GO:0006464 GO:0006486 GO:0006487 GO:0006725 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008483 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009225 GO:0009987 GO:0016740 GO:0016769 GO:0019538 GO:0019637 GO:0034641 GO:0034645 GO:0036211 GO:0043170 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044281 GO:0046483 GO:0055086 GO:0070085 GO:0070548 GO:0071704 GO:1901135 GO:1901137 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00250 ko00520 ko01100 ko01130 ko04931 map00250 map00520 map01100 map01130 map04931

Pfam Domains

Protein Families

GATase_6 SIS

Protein Analysis

753

Amino Acids

83.41

Weight (kDa)

8.07

Isoelectric Point (pI)

43.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GATase_6	PF13522	158 - 264	1.7e-13	Glutamine amidotransferase domain
GATase_7	PF13537	177 - 265	2.7e-09	Glutamine amidotransferase domain
SIS	PF01380	431 - 559	1.6e-34	SIS domain
SIS	PF01380	602 - 735	1.1e-18	SIS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0008285)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24090
fragaria_vesca	FvH4_6g00360 FvH4_6g00360
malus_domestica	MD04G1173900.v1.1 MD04G1246300.v1.1 MD12G1263800.v1.1
prunus_persica	Prupe.6G362600_v2.0.a1
pyrus_communis	pycom04g21700 pycom12g24000
rosa_chinensis	RchiOBHm_Chr3g0447661 RchiOBHm_Chr4g0412421
rosa_laevigata	RLG00000025980
rosa_multiflora	Rmu_ssc0000391.1_g000002
rosa_roxburghii	Rroxscaffold_6G00425870
rosa_rugosa	Rorug02G0604100 Rorug04G0077300 Rorug07G0328400
rosa_samantha	Rh3AG004100 Rh3BG003700 Rh3CG004000 Rh3DG004000 Rh4CG183700
rosa_wichuraiana	Rw3G000310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1749
AccB7I	CCANNNNNTGG	1 cut(s)	436
AccBSI	CCGCTC	1 cut(s)	524
AccI	GTMKAC	1 cut(s)	426
AciI	CCGC	6 cut(s)	318, 388, 522, 1266, 2038, 2096
AclWI	GGATC	5 cut(s)	344, 548, 1428, 1797, 2229
AcsI	RAATTY	5 cut(s)	324, 454, 566, 1150, 1176
AcuI	CTGAAG	5 cut(s)	251, 1292, 1497, 1787, 1984
AcvI	CACGTG	1 cut(s)	1039
AdeI	CACNNNGTG	1 cut(s)	1583
AfaI	GTAC	5 cut(s)	161, 227, 302, 1098, 1330
AfiI	CCNNNNNNNGG	5 cut(s)	295, 394, 436, 528, 1212
AflII	CTTAAG	1 cut(s)	1025
AflIII	ACRYGT	2 cut(s)	1036, 1038
AjnI	CCWGG	3 cut(s)	390, 556, 1776
AleI	CACNNNNGTG	1 cut(s)	1584
Alw21I	GWGCWC	1 cut(s)	551
Alw26I	GTCTC	2 cut(s)	101, 1351
AlwI	GGATC	5 cut(s)	344, 548, 1428, 1797, 2229
Ama87I	CYCGRG	1 cut(s)	2135
AoxI	GGCC	5 cut(s)	37, 283, 504, 606, 1075
ApeKI	GCWGC	9 cut(s)	1091, 1186, 1343, 1352, 2008, 2026, 2078, 2176, 2179
ApoI	RAATTY	5 cut(s)	324, 454, 566, 1150, 1176
ArsI	GACNNNNNNTTYG	2 cut(s)	1718, 1750
Asp700I	GAANNNNTTC	2 cut(s)	669, 1017
AspLEI	GCGC	1 cut(s)	787
AspS9I	GGNCC	5 cut(s)	504, 1276, 1430, 1762, 1937
AsuC2I	CCSGG	2 cut(s)	305, 499
AsuHPI	GGTGA	8 cut(s)	467, 731, 1009, 1022, 1487, 1666, 1697, 1934
AsuII	TTCGAA	1 cut(s)	2066
AsuNHI	GCTAGC	2 cut(s)	881, 2182
AvaI	CYCGRG	1 cut(s)	2135
AvaII	GGWCC	4 cut(s)	1276, 1430, 1762, 1937
BaeGI	GKGCMC	1 cut(s)	620
BaeI	ACNNNNGTAYC	2 cut(s)	1440, 1473
BanII	GRGCYC	2 cut(s)	522, 551
BbrPI	CACGTG	1 cut(s)	1039
BbsI	GAAGAC	1 cut(s)	2138
Bbv12I	GWGCWC	1 cut(s)	551
BbvCI	CCTCAGC	1 cut(s)	2130
BbvI	GCAGC	9 cut(s)	1103, 1198, 1330, 1339, 2020, 2038, 2065, 2166, 2188
BccI	CCATC	5 cut(s)	1001, 1025, 1117, 1651, 2199
BceAI	ACGGC	1 cut(s)	953
BciT130I	CCWGG	3 cut(s)	392, 558, 1778
BciVI	GTATCC	3 cut(s)	302, 1394, 1835
BcnI	CCSGG	2 cut(s)	305, 499
BcoDI	GTCTC	2 cut(s)	101, 1351
BfaI	CTAG	6 cut(s)	56, 623, 882, 1407, 1673, 2183
BfrI	CTTAAG	1 cut(s)	1025
BfuAI	ACCTGC	1 cut(s)	1749
BfuI	GTATCC	3 cut(s)	302, 1394, 1835
BisI	GCNGC	9 cut(s)	1092, 1187, 1344, 1353, 2009, 2027, 2079, 2177, 2180
BlsI	GCNGC	9 cut(s)	1093, 1188, 1345, 1354, 2010, 2028, 2080, 2178, 2181
Bme1390I	CCNGG	5 cut(s)	305, 392, 499, 558, 1778
Bme18I	GGWCC	4 cut(s)	1276, 1430, 1762, 1937
BmeT110I	CYCGRG	1 cut(s)	2135
BmgT120I	GGNCC	5 cut(s)	504, 1276, 1430, 1762, 1937
BmiI	GGNNCC	2 cut(s)	778, 1237
BmrFI	CCNGG	5 cut(s)	305, 392, 499, 558, 1778
BmrI	ACTGGG	1 cut(s)	2251
BmsI	GCATC	7 cut(s)	775, 940, 949, 1862, 1981, 2065, 2090
BmtI	GCTAGC	2 cut(s)	885, 2186
BmuI	ACTGGG	1 cut(s)	2251
BoxI	GACNNNNGTC	1 cut(s)	1039
BpiI	GAAGAC	1 cut(s)	2138
Bpu10I	CCTNAGC	1 cut(s)	2130
Bpu14I	TTCGAA	1 cut(s)	2066
BpuEI	CTTGAG	2 cut(s)	49, 1139
BpuMI	CCSGG	2 cut(s)	305, 499
Bsa29I	ATCGAT	1 cut(s)	333
BsaAI	YACGTR	2 cut(s)	1039, 1229
BsaBI	GATNNNNATC	1 cut(s)	1959
BsaI	GGTCTC	1 cut(s)	1351
BsaJI	CCNNGG	6 cut(s)	304, 527, 853, 1261, 1629, 2228
Bsc4I	CCNNNNNNNGG	5 cut(s)	295, 394, 436, 528, 1212
Bse118I	RCCGGY	1 cut(s)	1919
Bse1I	ACTGG	3 cut(s)	954, 2153, 2257
Bse3DI	GCAATG	4 cut(s)	11, 470, 845, 892
Bse8I	GATNNNNATC	1 cut(s)	1959
BseBI	CCWGG	3 cut(s)	392, 558, 1778
BseCI	ATCGAT	1 cut(s)	333
BseDI	CCNNGG	6 cut(s)	304, 527, 853, 1261, 1629, 2228
BseGI	GGATG	3 cut(s)	931, 1012, 1036
BseJI	GATNNNNATC	1 cut(s)	1959
BseLI	CCNNNNNNNGG	5 cut(s)	295, 394, 436, 528, 1212
BseMI	GCAATG	4 cut(s)	11, 470, 845, 892
BseMII	CTCAG	4 cut(s)	187, 557, 1599, 2144
BseNI	ACTGG	3 cut(s)	954, 2153, 2257
BseRI	GAGGAG	4 cut(s)	101, 268, 334, 352
BseSI	GKGCMC	1 cut(s)	620
BseXI	GCAGC	9 cut(s)	1103, 1198, 1330, 1339, 2020, 2038, 2065, 2166, 2188
Bsh1285I	CGRYCG	1 cut(s)	333
BshFI	GGCC	5 cut(s)	39, 285, 506, 608, 1077
BshVI	ATCGAT	1 cut(s)	333
BsiEI	CGRYCG	1 cut(s)	333
BsiHKAI	GWGCWC	1 cut(s)	551
BsiHKCI	CYCGRG	1 cut(s)	2135
BsiSI	CCGG	5 cut(s)	289, 304, 321, 499, 1920
BslFI	GGGAC	1 cut(s)	74
BslI	CCNNNNNNNGG	5 cut(s)	295, 394, 436, 528, 1212
BsmAI	GTCTC	2 cut(s)	101, 1351
BsmFI	GGGAC	1 cut(s)	74
BsnI	GGCC	5 cut(s)	39, 285, 506, 608, 1077
Bso31I	GGTCTC	1 cut(s)	1351
BsoBI	CYCGRG	1 cut(s)	2135
Bsp119I	TTCGAA	1 cut(s)	2066
Bsp1286I	GDGCHC	3 cut(s)	522, 551, 620
Bsp143I	GATC	9 cut(s)	58, 330, 334, 349, 553, 1411, 1420, 1789, 2221
BspACI	CCGC	6 cut(s)	318, 388, 522, 1266, 2038, 2096
BspANI	GGCC	5 cut(s)	39, 285, 506, 608, 1077
BspCNI	CTCAG	4 cut(s)	186, 556, 1600, 2143
BspDI	ATCGAT	1 cut(s)	333
BspHI	TCATGA	2 cut(s)	901, 1180
BspLI	GGNNCC	2 cut(s)	778, 1237
BspMI	ACCTGC	1 cut(s)	1749
BspOI	GCTAGC	2 cut(s)	885, 2186
BspPI	GGATC	5 cut(s)	344, 548, 1428, 1797, 2229
BspT104I	TTCGAA	1 cut(s)	2066
BspTI	CTTAAG	1 cut(s)	1025
BspTNI	GGTCTC	1 cut(s)	1351
BsrBI	CCGCTC	1 cut(s)	524
BsrDI	GCAATG	4 cut(s)	11, 470, 845, 892
BsrFI	RCCGGY	1 cut(s)	1919
BsrI	ACTGG	3 cut(s)	954, 2153, 2257
BssAI	RCCGGY	1 cut(s)	1919
BssECI	CCNNGG	6 cut(s)	304, 527, 853, 1261, 1629, 2228
BssMI	GATC	9 cut(s)	58, 330, 334, 349, 553, 1411, 1420, 1789, 2221
BssT1I	CCWWGG	4 cut(s)	527, 853, 1261, 1629
Bst2UI	CCWGG	3 cut(s)	392, 558, 1778
Bst4CI	ACNGT	5 cut(s)	1255, 1552, 1583, 1730, 2200
Bst6I	CTCTTC	2 cut(s)	950, 1705
BstAFI	CTTAAG	1 cut(s)	1025
BstBAI	YACGTR	2 cut(s)	1039, 1229
BstBI	TTCGAA	1 cut(s)	2066
BstDEI	CTNAG	4 cut(s)	173, 543, 1608, 2130
BstEII	GGTNACC	1 cut(s)	719
BstF5I	GGATG	3 cut(s)	931, 1012, 1036
BstHHI	GCGC	1 cut(s)	787
BstKTI	GATC	9 cut(s)	61, 333, 337, 352, 556, 1414, 1423, 1792, 2224
BstMAI	GTCTC	2 cut(s)	101, 1351
BstMBI	GATC	9 cut(s)	58, 330, 334, 349, 553, 1411, 1420, 1789, 2221
BstMCI	CGRYCG	1 cut(s)	333
BstMWI	GCNNNNNNNGC	5 cut(s)	488, 1303, 1349, 1352, 1667
BstNI	CCWGG	3 cut(s)	392, 558, 1778
BstNSI	RCATGY	1 cut(s)	1168
BstPAI	GACNNNNGTC	1 cut(s)	1039
BstPI	GGTNACC	1 cut(s)	719
BstSCI	CCNGG	5 cut(s)	303, 390, 497, 556, 1776
BstSLI	GKGCMC	1 cut(s)	620
BstV1I	GCAGC	9 cut(s)	1103, 1198, 1330, 1339, 2020, 2038, 2065, 2166, 2188
BstV2I	GAAGAC	1 cut(s)	2138
BstX2I	RGATCY	1 cut(s)	1789
BstYI	RGATCY	1 cut(s)	1789
Bsu15I	ATCGAT	1 cut(s)	333
BsuI	GTATCC	3 cut(s)	302, 1394, 1835
BsuRI	GGCC	5 cut(s)	39, 285, 506, 608, 1077
BsuTUI	ATCGAT	1 cut(s)	333
BtsCI	GGATG	3 cut(s)	931, 1012, 1036
BtsIMutI	CAGTG	2 cut(s)	961, 1579
BveI	ACCTGC	1 cut(s)	1749
CciI	TCATGA	2 cut(s)	901, 1180
CfoI	GCGC	1 cut(s)	787
Cfr10I	RCCGGY	1 cut(s)	1919
Cfr13I	GGNCC	5 cut(s)	504, 1276, 1430, 1762, 1937
ClaI	ATCGAT	1 cut(s)	333
CsiI	ACCWGGT	1 cut(s)	1776
Csp6I	GTAC	5 cut(s)	160, 226, 301, 1097, 1329
CviQI	GTAC	5 cut(s)	160, 226, 301, 1097, 1329
DdeI	CTNAG	4 cut(s)	173, 543, 1608, 2130
DpnI	GATC	9 cut(s)	60, 332, 336, 351, 555, 1413, 1422, 1791, 2223
DpnII	GATC	9 cut(s)	58, 330, 334, 349, 553, 1411, 1420, 1789, 2221
DraI	TTTAAA	1 cut(s)	796
DraIII	CACNNNGTG	1 cut(s)	1583
Eam1104I	CTCTTC	2 cut(s)	950, 1705
EarI	CTCTTC	2 cut(s)	950, 1705
EciI	GGCGGA	3 cut(s)	307, 377, 1281
Ecl136II	GAGCTC	1 cut(s)	549
Eco130I	CCWWGG	4 cut(s)	527, 853, 1261, 1629
Eco147I	AGGCCT	1 cut(s)	608
Eco24I	GRGCYC	2 cut(s)	522, 551
Eco31I	GGTCTC	1 cut(s)	1351
Eco47I	GGWCC	4 cut(s)	1276, 1430, 1762, 1937
Eco53kI	GAGCTC	1 cut(s)	549
Eco57I	CTGAAG	5 cut(s)	251, 1292, 1497, 1787, 1984
Eco72I	CACGTG	1 cut(s)	1039
Eco88I	CYCGRG	1 cut(s)	2135
Eco91I	GGTNACC	1 cut(s)	719
EcoICRI	GAGCTC	1 cut(s)	549
EcoO109I	RGGNCCY	2 cut(s)	1430, 1762
EcoO65I	GGTNACC	1 cut(s)	719
EcoRII	CCWGG	3 cut(s)	390, 556, 1776
EcoT14I	CCWWGG	4 cut(s)	527, 853, 1261, 1629
EcoT22I	ATGCAT	2 cut(s)	1855, 1902
EcoT38I	GRGCYC	2 cut(s)	522, 551
ErhI	CCWWGG	4 cut(s)	527, 853, 1261, 1629
FalI	AAGNNNNNCTT	2 cut(s)	1899, 1931
FaqI	GGGAC	1 cut(s)	74
FauI	CCCGC	2 cut(s)	529, 2045
FblI	GTMKAC	1 cut(s)	426
Fnu4HI	GCNGC	9 cut(s)	1092, 1187, 1344, 1353, 2009, 2027, 2079, 2177, 2180
FokI	GGATG	3 cut(s)	918, 1019, 1043
FriOI	GRGCYC	2 cut(s)	522, 551
Fsp4HI	GCNGC	9 cut(s)	1092, 1187, 1344, 1353, 2009, 2027, 2079, 2177, 2180
FspBI	CTAG	6 cut(s)	56, 623, 882, 1407, 1673, 2183
GlaI	GCGC	1 cut(s)	786
GluI	GCNGC	9 cut(s)	1092, 1187, 1344, 1353, 2009, 2027, 2079, 2177, 2180
HaeIII	GGCC	5 cut(s)	39, 285, 506, 608, 1077
HapII	CCGG	5 cut(s)	289, 304, 321, 499, 1920
HhaI	GCGC	1 cut(s)	787
Hin6I	GCGC	1 cut(s)	785
HinP1I	GCGC	1 cut(s)	785
HindIII	AAGCTT	2 cut(s)	677, 1769
HinfI	GANTC	7 cut(s)	180, 186, 314, 407, 1193, 2105, 2233
HpaII	CCGG	5 cut(s)	289, 304, 321, 499, 1920
HphI	GGTGA	8 cut(s)	467, 731, 1009, 1022, 1487, 1666, 1697, 1934
Hpy166II	GTNNAC	4 cut(s)	244, 427, 580, 833
Hpy188III	TCNNGA	6 cut(s)	56, 770, 902, 1118, 1181, 1765
Hpy8I	GTNNAC	4 cut(s)	244, 427, 580, 833
HpyAV	CCTTC	7 cut(s)	704, 710, 767, 1267, 1780, 1870, 1901
HpyCH4III	ACNGT	5 cut(s)	1255, 1552, 1583, 1730, 2200
HpyCH4IV	ACGT	4 cut(s)	240, 835, 1038, 1228
HpyF10VI	GCNNNNNNNGC	5 cut(s)	488, 1303, 1349, 1352, 1667
HpyF3I	CTNAG	4 cut(s)	173, 543, 1608, 2130
HpySE526I	ACGT	4 cut(s)	240, 835, 1038, 1228
HspAI	GCGC	1 cut(s)	785
Kzo9I	GATC	9 cut(s)	58, 330, 334, 349, 553, 1411, 1420, 1789, 2221
LmnI	GCTCC	3 cut(s)	529, 776, 855
Lsp1109I	GCAGC	9 cut(s)	1103, 1198, 1330, 1339, 2020, 2038, 2065, 2166, 2188
LweI	GCATC	7 cut(s)	775, 940, 949, 1862, 1981, 2065, 2090
MabI	ACCWGGT	1 cut(s)	1776
MaeI	CTAG	6 cut(s)	56, 623, 882, 1407, 1673, 2183
MaeII	ACGT	4 cut(s)	240, 835, 1038, 1228
MaeIII	GTNAC	6 cut(s)	144, 719, 1390, 1571, 1685, 2248
MalI	GATC	9 cut(s)	60, 332, 336, 351, 555, 1413, 1422, 1791, 2223
MbiI	CCGCTC	1 cut(s)	524
MboI	GATC	9 cut(s)	58, 330, 334, 349, 553, 1411, 1420, 1789, 2221
MfeI	CAATTG	1 cut(s)	1802
MflI	RGATCY	1 cut(s)	1789
MhlI	GDGCHC	3 cut(s)	522, 551, 620
MlyI	GAGTC	2 cut(s)	416, 2114
MmeI	TCCRAC	1 cut(s)	1398
Mph1103I	ATGCAT	2 cut(s)	1855, 1902
MroXI	GAANNNNTTC	2 cut(s)	669, 1017
MseI	TTAA	8 cut(s)	611, 795, 870, 1026, 1284, 2160, 2204, 2214
MslI	CAYNNNNRTG	2 cut(s)	1584, 1596
MspA1I	CMGCKG	2 cut(s)	1454, 2179
MspCI	CTTAAG	1 cut(s)	1025
MspI	CCGG	5 cut(s)	289, 304, 321, 499, 1920
MspR9I	CCNGG	5 cut(s)	305, 392, 499, 558, 1778
MunI	CAATTG	1 cut(s)	1802
MvaI	CCWGG	3 cut(s)	392, 558, 1778
MwoI	GCNNNNNNNGC	5 cut(s)	488, 1303, 1349, 1352, 1667
NciI	CCSGG	2 cut(s)	305, 499
NdeII	GATC	9 cut(s)	58, 330, 334, 349, 553, 1411, 1420, 1789, 2221
NheI	GCTAGC	2 cut(s)	881, 2182
NlaIV	GGNNCC	2 cut(s)	778, 1237
NmuCI	GTSAC	3 cut(s)	719, 1685, 2248
NsiI	ATGCAT	2 cut(s)	1855, 1902
NspI	RCATGY	1 cut(s)	1168
NspV	TTCGAA	1 cut(s)	2066
OliI	CACNNNNGTG	1 cut(s)	1584
PaeR7I	CTCGAG	1 cut(s)	2135
PagI	TCATGA	2 cut(s)	901, 1180
PceI	AGGCCT	1 cut(s)	608
PcsI	WCGNNNNNNNCGW	2 cut(s)	411, 420
PdmI	GAANNNNTTC	2 cut(s)	669, 1017
PfeI	GAWTC	5 cut(s)	180, 186, 314, 1193, 2233
PflMI	CCANNNNNTGG	1 cut(s)	436
PfoI	TCCNGGA	1 cut(s)	556
PkrI	GCNGC	9 cut(s)	1093, 1188, 1345, 1354, 2010, 2028, 2080, 2178, 2181
Ple19I	CGATCG	1 cut(s)	333
PleI	GAGTC	2 cut(s)	415, 2113
PmaCI	CACGTG	1 cut(s)	1039
PmlI	CACGTG	1 cut(s)	1039
PpsI	GAGTC	2 cut(s)	415, 2113
Ppu21I	YACGTR	2 cut(s)	1039, 1229
PpuMI	RGGWCCY	2 cut(s)	1430, 1762
PshAI	GACNNNNGTC	1 cut(s)	1039
Psp124BI	GAGCTC	1 cut(s)	551
Psp5II	RGGWCCY	2 cut(s)	1430, 1762
Psp6I	CCWGG	3 cut(s)	390, 556, 1776
PspCI	CACGTG	1 cut(s)	1039
PspEI	GGTNACC	1 cut(s)	719
PspGI	CCWGG	3 cut(s)	390, 556, 1776
PspN4I	GGNNCC	2 cut(s)	778, 1237
PspPI	GGNCC	5 cut(s)	504, 1276, 1430, 1762, 1937
PspPPI	RGGWCCY	2 cut(s)	1430, 1762
PspXI	VCTCGAGB	1 cut(s)	2135
PsuI	RGATCY	1 cut(s)	1789
PvuI	CGATCG	1 cut(s)	333
PvuII	CAGCTG	2 cut(s)	1454, 2179
RsaI	GTAC	5 cut(s)	161, 227, 302, 1098, 1330
RsaNI	GTAC	5 cut(s)	160, 226, 301, 1097, 1329
RseI	CAYNNNNRTG	2 cut(s)	1584, 1596
SacI	GAGCTC	1 cut(s)	551
SaqAI	TTAA	8 cut(s)	611, 795, 870, 1026, 1284, 2160, 2204, 2214
SatI	GCNGC	9 cut(s)	1092, 1187, 1344, 1353, 2009, 2027, 2079, 2177, 2180
Sau3AI	GATC	9 cut(s)	58, 330, 334, 349, 553, 1411, 1420, 1789, 2221
Sau96I	GGNCC	5 cut(s)	504, 1276, 1430, 1762, 1937
SchI	GAGTC	2 cut(s)	416, 2114
ScrFI	CCNGG	5 cut(s)	305, 392, 499, 558, 1778
SduI	GDGCHC	3 cut(s)	522, 551, 620
SexAI	ACCWGGT	1 cut(s)	1776
SfaNI	GCATC	7 cut(s)	775, 940, 949, 1862, 1981, 2065, 2090
Sfr274I	CTCGAG	1 cut(s)	2135
SfuI	TTCGAA	1 cut(s)	2066
SinI	GGWCC	4 cut(s)	1276, 1430, 1762, 1937
SlaI	CTCGAG	1 cut(s)	2135
SmiMI	CAYNNNNRTG	2 cut(s)	1584, 1596
SmlI	CTYRAG	4 cut(s)	28, 1025, 1118, 2135
SmoI	CTYRAG	4 cut(s)	28, 1025, 1118, 2135
SseBI	AGGCCT	1 cut(s)	608
SsiI	CCGC	6 cut(s)	318, 388, 522, 1266, 2038, 2096
SspMI	CTAG	6 cut(s)	56, 623, 882, 1407, 1673, 2183
SstI	GAGCTC	1 cut(s)	551
StuI	AGGCCT	1 cut(s)	608
StyD4I	CCNGG	5 cut(s)	303, 390, 497, 556, 1776
StyI	CCWWGG	4 cut(s)	527, 853, 1261, 1629
TaaI	ACNGT	5 cut(s)	1255, 1552, 1583, 1730, 2200
TaiI	ACGT	4 cut(s)	243, 838, 1041, 1231
TaqI	TCGA	6 cut(s)	329, 333, 405, 2066, 2113, 2136
TatI	WGTACW	1 cut(s)	1096
TfiI	GAWTC	5 cut(s)	180, 186, 314, 1193, 2233
Tru1I	TTAA	8 cut(s)	611, 795, 870, 1026, 1284, 2160, 2204, 2214
Tru9I	TTAA	8 cut(s)	611, 795, 870, 1026, 1284, 2160, 2204, 2214
TscAI	CASTG	2 cut(s)	961, 1586
TseFI	GTSAC	3 cut(s)	719, 1685, 2248
TseI	GCWGC	9 cut(s)	1091, 1186, 1343, 1352, 2008, 2026, 2078, 2176, 2179
Tsp45I	GTSAC	3 cut(s)	719, 1685, 2248
TspGWI	ACGGA	1 cut(s)	412
TspRI	CASTG	2 cut(s)	961, 1586
Van91I	CCANNNNNTGG	1 cut(s)	436
Vha464I	CTTAAG	1 cut(s)	1025
VpaK11BI	GGWCC	4 cut(s)	1276, 1430, 1762, 1937
XapI	RAATTY	5 cut(s)	324, 454, 566, 1150, 1176
XbaI	TCTAGA	1 cut(s)	55
XceI	RCATGY	1 cut(s)	1168
XcmI	CCANNNNNNNNNTGG	2 cut(s)	991, 1120
XhoI	CTCGAG	1 cut(s)	2135
XmiI	GTMKAC	1 cut(s)	426
XmnI	GAANNNNTTC	2 cut(s)	669, 1017
XspI	CTAG	6 cut(s)	56, 623, 882, 1407, 1673, 2183
Zsp2I	ATGCAT	2 cut(s)	1855, 1902

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.