Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007178

Physical Location & Seq

Genomic Coordinates Reverse (-)

3045435 .. 3046944

Gene Structure 1510 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGAGCCAAGAACAGCCGAGGAGGCCCGTCGAGGATGAGCAGCAGGGGGGTGACCAATACGGCGACTCTTATCTCGAGCTCGCGGCGAAGGTGGTGGCTGATAAGGATGCAGACTCCGCCGTGCAGAGCCCCGTCGGTCTGAAGCTTATTAATGCAGATGACTTCAGCACTAAGAAGACTGAACATCCCGGACGGCGAGTTGTTCCCGAGTCAGTCGGCGGACAGGGTACGAGTCAAAATTCAAGGCAAGTAGATGAAAAGGAAAGGAAAATCTGTGAATTAGCTAAGGTTGTTGTGCAATACAGCCAGAGAGGTCATTTGTCAGCACTAATAACCGGTCAACCTATTGGCGGTGCTAGCAGTCAAATCACCATCGGCGAAGCCTTGGAGGCGACCGCCATGACGGCTGGACAGAAGCCGGTGGAGTGGAGTGATGCGGCCGCAATTCAAGCCGCCGAGGTTAGAGCCACTGGCCGAACCAACATTGTACCCGGTGGTGTCGCTGCCGCAGCTCAATCGGCGGCAACTCTCAATGCTAGGGCTACGCGTGACGAGGACAAGACAAAACTTGCTGATATCCTTGCGGATGCAACTTCAAAATTACCGGCAGACAAACCGGCGACACGAAGGGATGCTGAGGGGGTGACGGGTGCAGAAATGCGAAATGATCCATATCTGACCACCCATCCCACCGGTGTGGCAGCTTCGGTGGCTGCCGCTGCTAGGCTCAACCAGGGTAATAGCATTGAAGGAACAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SMP

Protein Analysis

253

Amino Acids

26.44

Weight (kDa)

5.37

Isoelectric Point (pI)

36.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SMP	PF04927	123 - 181	1.2e-22	Seed maturation protein
SMP	PF04927	188 - 245	5.2e-21	Seed maturation protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007178)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27980
fragaria_vesca	FvH4_6g03840 FvH4_6g03841
malus_domestica	MD04G1217900.v1.1 MD12G1235300.v1.1
prunus_persica	Prupe.6G337900_v2.0.a1 Prupe.6G337900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0452411
rosa_laevigata	RLG00000025605
rosa_multiflora	Rmu_co8111080.1_g000001 Rmu_sc0010928.1_g000016
rosa_roxburghii	Rroxscaffold_6G00429430 Rroxscaffold_6G00429940
rosa_rugosa	Rorug02G0640500 Rorug02G0640600
rosa_samantha	Rh3AG042400 Rh3AG042500 Rh3BG043900 Rh3BG044000 Rh3CG042700 Rh3CG042800 Rh3DG043400 Rh3DG043500
rosa_wichuraiana	Rw3G003250 Rw3G003260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	83, 547
AclWI	GGATC	1 cut(s)	662
AcoI	YGGCCR	2 cut(s)	438, 472
AcsI	RAATTY	1 cut(s)	238
AcuI	CTGAAG	2 cut(s)	148, 161
AfaI	GTAC	2 cut(s)	229, 489
AfiI	CCNNNNNNNGG	2 cut(s)	350, 723
AflIII	ACRYGT	1 cut(s)	545
AgeI	ACCGGT	2 cut(s)	335, 692
AgsI	TTSAA	4 cut(s)	243, 449, 597, 749
AjnI	CCWGG	1 cut(s)	732
AleI	CACNNNNGTG	1 cut(s)	695
AluBI	AGCT	5 cut(s)	79, 145, 284, 512, 704
AluI	AGCT	5 cut(s)	79, 145, 284, 512, 704
Alw21I	GWGCWC	1 cut(s)	81
AlwI	GGATC	1 cut(s)	662
Ama87I	CYCGRG	2 cut(s)	74, 206
AoxI	GGCC	3 cut(s)	23, 438, 472
ApeKI	GCWGC	6 cut(s)	40, 503, 509, 701, 713, 719
ApoI	RAATTY	1 cut(s)	238
AseI	ATTAAT	1 cut(s)	150
AsiGI	ACCGGT	2 cut(s)	335, 692
AspS9I	GGNCC	1 cut(s)	24
AsuC2I	CCSGG	2 cut(s)	189, 492
AsuHPI	GGTGA	3 cut(s)	62, 361, 655
AsuNHI	GCTAGC	1 cut(s)	356
AvaI	CYCGRG	2 cut(s)	74, 206
BanII	GRGCYC	2 cut(s)	81, 131
BbsI	GAAGAC	1 cut(s)	182
Bbv12I	GWGCWC	1 cut(s)	81
BbvCI	CCTCAGC	1 cut(s)	636
BbvI	GCAGC	6 cut(s)	52, 490, 521, 700, 706, 713
BccI	CCATC	2 cut(s)	380, 693
BceAI	ACGGC	4 cut(s)	76, 104, 209, 420
BcgI	CGANNNNNNTGC	2 cut(s)	498, 532
BciT130I	CCWGG	1 cut(s)	734
BcnI	CCSGG	2 cut(s)	189, 492
BfaI	CTAG	3 cut(s)	357, 537, 723
BglI	GCCNNNNNGGC	3 cut(s)	22, 389, 404
Bme1390I	CCNGG	3 cut(s)	189, 492, 734
BmeT110I	CYCGRG	2 cut(s)	74, 206
BmgT120I	GGNCC	1 cut(s)	24
BmrFI	CCNGG	3 cut(s)	189, 492, 734
BmsI	GCATC	4 cut(s)	97, 424, 577, 622
BmtI	GCTAGC	1 cut(s)	360
BpiI	GAAGAC	1 cut(s)	182
Bpu10I	CCTNAGC	2 cut(s)	285, 636
BpuMI	CCSGG	2 cut(s)	189, 492
BsaBI	GATNNNNATC	1 cut(s)	672
BsaJI	CCNNGG	4 cut(s)	17, 384, 456, 733
BsaWI	WCCGGW	2 cut(s)	335, 692
Bsc4I	CCNNNNNNNGG	2 cut(s)	350, 723
Bse118I	RCCGGY	5 cut(s)	335, 418, 604, 616, 692
Bse1I	ACTGG	1 cut(s)	475
Bse8I	GATNNNNATC	1 cut(s)	672
BseBI	CCWGG	1 cut(s)	734
BseDI	CCNNGG	4 cut(s)	17, 384, 456, 733
BseGI	GGATG	6 cut(s)	40, 112, 184, 592, 637, 685
BseJI	GATNNNNATC	1 cut(s)	672
BseLI	CCNNNNNNNGG	2 cut(s)	350, 723
BseMII	CTCAG	1 cut(s)	627
BseNI	ACTGG	1 cut(s)	475
BseRI	GAGGAG	1 cut(s)	34
BseX3I	CGGCCG	1 cut(s)	438
BseXI	GCAGC	6 cut(s)	52, 490, 521, 700, 706, 713
BsgI	GTGCAG	2 cut(s)	143, 672
Bsh1236I	CGCG	2 cut(s)	83, 547
Bsh1285I	CGRYCG	2 cut(s)	396, 441
BshFI	GGCC	3 cut(s)	25, 440, 474
BshTI	ACCGGT	2 cut(s)	335, 692
BsiEI	CGRYCG	2 cut(s)	396, 441
BsiHKAI	GWGCWC	1 cut(s)	81
BsiHKCI	CYCGRG	2 cut(s)	74, 206
BsiSI	CCGG	7 cut(s)	189, 336, 419, 492, 605, 617, 693
BslI	CCNNNNNNNGG	2 cut(s)	350, 723
BsnI	GGCC	3 cut(s)	25, 440, 474
BsoBI	CYCGRG	2 cut(s)	74, 206
Bsp1286I	GDGCHC	2 cut(s)	81, 131
Bsp143I	GATC	1 cut(s)	667
BspANI	GGCC	3 cut(s)	25, 440, 474
BspCNI	CTCAG	1 cut(s)	628
BspFNI	CGCG	2 cut(s)	83, 547
BspOI	GCTAGC	1 cut(s)	360
BspPI	GGATC	1 cut(s)	662
BsrFI	RCCGGY	5 cut(s)	335, 418, 604, 616, 692
BsrI	ACTGG	1 cut(s)	475
BssAI	RCCGGY	5 cut(s)	335, 418, 604, 616, 692
BssECI	CCNNGG	4 cut(s)	17, 384, 456, 733
BssMI	GATC	1 cut(s)	667
BssT1I	CCWWGG	1 cut(s)	384
Bst2UI	CCWGG	1 cut(s)	734
BstC8I	GCNNGC	2 cut(s)	81, 358
BstDEI	CTNAG	3 cut(s)	171, 285, 636
BstEII	GGTNACC	1 cut(s)	50
BstF5I	GGATG	6 cut(s)	40, 112, 184, 592, 637, 685
BstFNI	CGCG	2 cut(s)	83, 547
BstKTI	GATC	1 cut(s)	670
BstMBI	GATC	1 cut(s)	667
BstMCI	CGRYCG	2 cut(s)	396, 441
BstNI	CCWGG	1 cut(s)	734
BstPI	GGTNACC	1 cut(s)	50
BstSCI	CCNGG	3 cut(s)	187, 490, 732
BstUI	CGCG	2 cut(s)	83, 547
BstV1I	GCAGC	6 cut(s)	52, 490, 521, 700, 706, 713
BstV2I	GAAGAC	1 cut(s)	182
BstXI	CCANNNNNNTGG	1 cut(s)	697
BstZI	CGGCCG	1 cut(s)	438
BsuRI	GGCC	3 cut(s)	25, 440, 474
BtsCI	GGATG	6 cut(s)	40, 112, 184, 592, 637, 685
BtsIMutI	CAGTG	1 cut(s)	468
Cac8I	GCNNGC	2 cut(s)	81, 358
CciNI	GCGGCCGC	1 cut(s)	438
Cfr10I	RCCGGY	5 cut(s)	335, 418, 604, 616, 692
Cfr13I	GGNCC	1 cut(s)	24
Csp6I	GTAC	2 cut(s)	228, 488
CspAI	ACCGGT	2 cut(s)	335, 692
CviAII	CATG	1 cut(s)	400
CviQI	GTAC	2 cut(s)	228, 488
DdeI	CTNAG	3 cut(s)	171, 285, 636
DpnI	GATC	1 cut(s)	669
DpnII	GATC	1 cut(s)	667
EaeI	YGGCCR	2 cut(s)	438, 472
EagI	CGGCCG	1 cut(s)	438
EciI	GGCGGA	2 cut(s)	106, 234
Ecl136II	GAGCTC	1 cut(s)	79
EclXI	CGGCCG	1 cut(s)	438
Eco130I	CCWWGG	1 cut(s)	384
Eco24I	GRGCYC	2 cut(s)	81, 131
Eco32I	GATATC	1 cut(s)	577
Eco52I	CGGCCG	1 cut(s)	438
Eco53kI	GAGCTC	1 cut(s)	79
Eco57I	CTGAAG	2 cut(s)	148, 161
Eco88I	CYCGRG	2 cut(s)	74, 206
Eco91I	GGTNACC	1 cut(s)	50
EcoICRI	GAGCTC	1 cut(s)	79
EcoO65I	GGTNACC	1 cut(s)	50
EcoRII	CCWGG	1 cut(s)	732
EcoRV	GATATC	1 cut(s)	577
EcoT14I	CCWWGG	1 cut(s)	384
EcoT38I	GRGCYC	2 cut(s)	81, 131
ErhI	CCWWGG	1 cut(s)	384
FaeI	CATG	1 cut(s)	403
FaiI	YATR	2 cut(s)	401, 673
FatI	CATG	1 cut(s)	399
FokI	GGATG	6 cut(s)	47, 119, 171, 599, 644, 672
FriOI	GRGCYC	2 cut(s)	81, 131
FspBI	CTAG	3 cut(s)	357, 537, 723
HaeIII	GGCC	3 cut(s)	25, 440, 474
HapII	CCGG	7 cut(s)	189, 336, 419, 492, 605, 617, 693
Hin1II	CATG	1 cut(s)	403
HincII	GTYRAC	1 cut(s)	341
HindII	GTYRAC	1 cut(s)	341
HindIII	AAGCTT	1 cut(s)	143
HinfI	GANTC	4 cut(s)	65, 113, 209, 232
HpaII	CCGG	7 cut(s)	189, 336, 419, 492, 605, 617, 693
HphI	GGTGA	3 cut(s)	62, 361, 655
Hpy166II	GTNNAC	1 cut(s)	341
Hpy188I	TCNGA	2 cut(s)	141, 678
Hpy188III	TCNNGA	2 cut(s)	74, 206
Hpy8I	GTNNAC	1 cut(s)	341
Hpy99I	CGWCG	2 cut(s)	32, 137
HpyAV	CCTTC	3 cut(s)	82, 621, 743
HpyCH4V	TGCA	6 cut(s)	110, 124, 155, 298, 590, 653
HpyF3I	CTNAG	3 cut(s)	171, 285, 636
Hsp92II	CATG	1 cut(s)	403
Kzo9I	GATC	1 cut(s)	667
Lsp1109I	GCAGC	6 cut(s)	52, 490, 521, 700, 706, 713
LweI	GCATC	4 cut(s)	97, 424, 577, 622
MaeI	CTAG	3 cut(s)	357, 537, 723
MaeIII	GTNAC	3 cut(s)	50, 548, 643
MalI	GATC	1 cut(s)	669
MboI	GATC	1 cut(s)	667
MboII	GAAGA	1 cut(s)	187
MhlI	GDGCHC	2 cut(s)	81, 131
MluCI	AATT	4 cut(s)	238, 278, 444, 599
MluI	ACGCGT	1 cut(s)	545
MlyI	GAGTC	4 cut(s)	59, 107, 218, 241
MnlI	CCTC	8 cut(s)	12, 15, 25, 305, 382, 451, 547, 631
MseI	TTAA	1 cut(s)	150
MslI	CAYNNNNRTG	1 cut(s)	695
MspA1I	CMGCKG	1 cut(s)	719
MspI	CCGG	7 cut(s)	189, 336, 419, 492, 605, 617, 693
MspR9I	CCNGG	3 cut(s)	189, 492, 734
MvaI	CCWGG	1 cut(s)	734
MvnI	CGCG	2 cut(s)	83, 547
NciI	CCSGG	2 cut(s)	189, 492
NdeII	GATC	1 cut(s)	667
NheI	GCTAGC	1 cut(s)	356
NlaIII	CATG	1 cut(s)	403
NmeAIII	GCCGAG	2 cut(s)	42, 481
NmuCI	GTSAC	3 cut(s)	50, 548, 643
NotI	GCGGCCGC	1 cut(s)	438
OliI	CACNNNNGTG	1 cut(s)	695
PaeR7I	CTCGAG	1 cut(s)	74
PfoI	TCCNGGA	1 cut(s)	187
PinAI	ACCGGT	2 cut(s)	335, 692
PleI	GAGTC	4 cut(s)	59, 107, 217, 240
PpsI	GAGTC	4 cut(s)	59, 107, 217, 240
PshBI	ATTAAT	1 cut(s)	150
Psp124BI	GAGCTC	1 cut(s)	81
Psp6I	CCWGG	1 cut(s)	732
PspEI	GGTNACC	1 cut(s)	50
PspGI	CCWGG	1 cut(s)	732
PspPI	GGNCC	1 cut(s)	24
RsaI	GTAC	2 cut(s)	229, 489
RsaNI	GTAC	2 cut(s)	228, 488
RseI	CAYNNNNRTG	1 cut(s)	695
SacI	GAGCTC	1 cut(s)	81
SaqAI	TTAA	1 cut(s)	150
Sau3AI	GATC	1 cut(s)	667
Sau96I	GGNCC	1 cut(s)	24
SchI	GAGTC	4 cut(s)	59, 107, 218, 241
ScrFI	CCNGG	3 cut(s)	189, 492, 734
SduI	GDGCHC	2 cut(s)	81, 131
SfaNI	GCATC	4 cut(s)	97, 424, 577, 622
Sfr274I	CTCGAG	1 cut(s)	74
SgrAI	CRCCGGYG	1 cut(s)	692
SlaI	CTCGAG	1 cut(s)	74
SmiMI	CAYNNNNRTG	1 cut(s)	695
SmlI	CTYRAG	1 cut(s)	74
SmoI	CTYRAG	1 cut(s)	74
Sse9I	AATT	4 cut(s)	238, 278, 444, 599
SspMI	CTAG	3 cut(s)	357, 537, 723
SstI	GAGCTC	1 cut(s)	81
StyD4I	CCNGG	3 cut(s)	187, 490, 732
StyI	CCWWGG	1 cut(s)	384
TaqI	TCGA	2 cut(s)	30, 75
TaqII	GACCGA	1 cut(s)	125
TasI	AATT	4 cut(s)	238, 278, 444, 599
TauI	GCSGC	7 cut(s)	86, 440, 443, 455, 509, 524, 719
Tru1I	TTAA	1 cut(s)	150
Tru9I	TTAA	1 cut(s)	150
TscAI	CASTG	1 cut(s)	475
TseFI	GTSAC	3 cut(s)	50, 548, 643
TseI	GCWGC	6 cut(s)	40, 503, 509, 701, 713, 719
Tsp45I	GTSAC	3 cut(s)	50, 548, 643
TspDTI	ATGAA	1 cut(s)	270
TspRI	CASTG	1 cut(s)	475
VspI	ATTAAT	1 cut(s)	150
XapI	RAATTY	1 cut(s)	238
XhoI	CTCGAG	1 cut(s)	74
XspI	CTAG	3 cut(s)	357, 537, 723

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.