Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005055

Physical Location & Seq

Genomic Coordinates Forward (+)

5896021 .. 5896769

Gene Structure 749 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGAACCCCTCCGAGCTGAGTTTGGTGGGCCCGAGATAGAGCCCCACATTACCGCCGTAGGATCTGTCCTTTTGACGCATGACTACGCGGTCAAACAATTTATAAATGGTTGTGAAAATATAGAACCCTACACCTGTGAAGTTGATCAGGTGGTTACTCGCAAATTCTATTACCAACCTGTCTCTCTCCTCTTTCATCCATGTCCATGGATTGGACACTTTGGTGGTTATCTACATCGCTGTAATTCTCATATGCCACACTTGAGCCTCCTTTATGGGAATTTGACAGATGAAGAGAGGAAGAGAGCTCTAGAAAAGGTTACTGAGCTGGACGACAGCATCGCTAGCCTCAAGTTCACCATAAGTCACCTTGTTTTGTACAAAACCCACAATGAAGCTAGAGATCAACATTCTTGGGAGAAGGTTATGGAATACAACCTCCGACAACGCAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000394 GO:0003674 GO:0003824 GO:0004112 GO:0004113 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006388 GO:0006396 GO:0006399 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008033 GO:0008081 GO:0008150 GO:0008152 GO:0008380 GO:0009117 GO:0009187 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016788 GO:0019637 GO:0034470 GO:0034641 GO:0034660 GO:0042578 GO:0043170 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044464 GO:0046483 GO:0055086 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2_5_RNA_ligase2 CPDase

Protein Analysis

151

Amino Acids

17.6

Weight (kDa)

6.03

Isoelectric Point (pI)

45.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005055)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G18930
fragaria_vesca	FvH4_3g06750 FvH4_3g06750 FvH4_3g06750 FvH4_6g06860 FvH4_6g06860
malus_domestica	MD10G1271200.v1.1 MD10G1271300.v1.1
prunus_persica	Prupe.4G070300_v2.0.a1 Prupe.6G318900_v2.0.a1
pyrus_communis	pycom10g22700
rosa_chinensis	RchiOBHm_Chr3g0456341 RchiOBHm_Chr5g0012411
rosa_laevigata	RLG00000025311 RLG00000031911
rosa_multiflora	Rmu_co8444057.1_g000001 Rmu_sc0002607.1_g000022 Rmu_sc0018054.1_g000004
rosa_roxburghii	Rroxscaffold_1G00064260 Rroxscaffold_6G00422810
rosa_rugosa	Rorug05G0000900
rosa_samantha	Rh3AG072700 Rh3BG074800 Rh3CG074400 Rh5AG095400 Rh5AG499800 Rh5BG091600 Rh5DG091000
rosa_wichuraiana	Rw3G006240 Rw5G008340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	104
AasI	GACNNNNNNGTC	1 cut(s)	89
AccB7I	CCANNNNNTGG	1 cut(s)	212
AccII	CGCG	1 cut(s)	89
AciI	CCGC	2 cut(s)	54, 89
AclWI	GGATC	1 cut(s)	70
AcsI	RAATTY	2 cut(s)	164, 280
AfaI	GTAC	1 cut(s)	380
AfiI	CCNNNNNNNGG	1 cut(s)	212
AleI	CACNNNNGTG	1 cut(s)	222
AluBI	AGCT	4 cut(s)	17, 308, 328, 398
AluI	AGCT	4 cut(s)	17, 308, 328, 398
Alw21I	GWGCWC	1 cut(s)	310
Alw26I	GTCTC	1 cut(s)	187
AlwI	GGATC	1 cut(s)	70
Ama87I	CYCGRG	1 cut(s)	32
AoxI	GGCC	1 cut(s)	29
ApaI	GGGCCC	1 cut(s)	33
ApoI	RAATTY	2 cut(s)	164, 280
AspS9I	GGNCC	2 cut(s)	29, 30
AsuHPI	GGTGA	2 cut(s)	349, 359
AsuNHI	GCTAGC	1 cut(s)	344
AvaI	CYCGRG	1 cut(s)	32
BaeGI	GKGCMC	1 cut(s)	33
BanII	GRGCYC	3 cut(s)	33, 45, 310
Bbv12I	GWGCWC	1 cut(s)	310
BceAI	ACGGC	1 cut(s)	41
BclI	TGATCA	1 cut(s)	145
BcoDI	GTCTC	1 cut(s)	187
BfaI	CTAG	3 cut(s)	311, 345, 399
BmeT110I	CYCGRG	1 cut(s)	32
BmgT120I	GGNCC	2 cut(s)	29, 30
BmiI	GGNNCC	2 cut(s)	6, 31
BmsI	GCATC	1 cut(s)	348
BmtI	GCTAGC	1 cut(s)	348
BpuEI	CTTGAG	2 cut(s)	283, 335
BsaJI	CCNNGG	1 cut(s)	206
Bsc4I	CCNNNNNNNGG	1 cut(s)	212
BseDI	CCNNGG	1 cut(s)	206
BseGI	GGATG	1 cut(s)	196
BseLI	CCNNNNNNNGG	1 cut(s)	212
BseMII	CTCAG	2 cut(s)	9, 315
BseRI	GAGGAG	1 cut(s)	179
BseSI	GKGCMC	1 cut(s)	33
Bsh1236I	CGCG	1 cut(s)	89
BshFI	GGCC	1 cut(s)	31
BsiHKAI	GWGCWC	1 cut(s)	310
BsiHKCI	CYCGRG	1 cut(s)	32
BslI	CCNNNNNNNGG	1 cut(s)	212
BsmAI	GTCTC	1 cut(s)	187
BsnI	GGCC	1 cut(s)	31
BsoBI	CYCGRG	1 cut(s)	32
Bsp120I	GGGCCC	1 cut(s)	29
Bsp1286I	GDGCHC	3 cut(s)	33, 45, 310
Bsp1407I	TGTACA	1 cut(s)	378
Bsp143I	GATC	3 cut(s)	62, 145, 403
Bsp19I	CCATGG	1 cut(s)	206
BspACI	CCGC	2 cut(s)	54, 89
BspANI	GGCC	1 cut(s)	31
BspCNI	CTCAG	2 cut(s)	10, 316
BspFNI	CGCG	1 cut(s)	89
BspLI	GGNNCC	2 cut(s)	6, 31
BspOI	GCTAGC	1 cut(s)	348
BspPI	GGATC	1 cut(s)	70
BsrGI	TGTACA	1 cut(s)	378
BssECI	CCNNGG	1 cut(s)	206
BssMI	GATC	3 cut(s)	62, 145, 403
BssT1I	CCWWGG	1 cut(s)	206
Bst6I	CTCTTC	2 cut(s)	288, 296
BstAUI	TGTACA	1 cut(s)	378
BstC8I	GCNNGC	1 cut(s)	346
BstDEI	CTNAG	2 cut(s)	18, 324
BstDSI	CCRYGG	1 cut(s)	206
BstF5I	GGATG	1 cut(s)	196
BstFNI	CGCG	1 cut(s)	89
BstKTI	GATC	3 cut(s)	65, 148, 406
BstMAI	GTCTC	1 cut(s)	187
BstMBI	GATC	3 cut(s)	62, 145, 403
BstMWI	GCNNNNNNNGC	1 cut(s)	345
BstSLI	GKGCMC	1 cut(s)	33
BstUI	CGCG	1 cut(s)	89
BstX2I	RGATCY	1 cut(s)	62
BstXI	CCANNNNNNTGG	1 cut(s)	207
BstYI	RGATCY	1 cut(s)	62
BsuRI	GGCC	1 cut(s)	31
BtgI	CCRYGG	1 cut(s)	206
BtgZI	GCGATG	2 cut(s)	221, 325
BtsCI	GGATG	1 cut(s)	196
Cac8I	GCNNGC	1 cut(s)	346
Cfr13I	GGNCC	2 cut(s)	29, 30
CseI	GACGC	1 cut(s)	85
Csp6I	GTAC	1 cut(s)	379
CviAII	CATG	3 cut(s)	80, 201, 207
CviJI	RGCY	8 cut(s)	17, 31, 43, 267, 308, 328, 348, 398
CviKI_1	RGCY	8 cut(s)	17, 31, 43, 267, 308, 328, 348, 398
CviQI	GTAC	1 cut(s)	379
DdeI	CTNAG	2 cut(s)	18, 324
DpnI	GATC	3 cut(s)	64, 147, 405
DpnII	GATC	3 cut(s)	62, 145, 403
DrdI	GACNNNNNNGTC	1 cut(s)	89
DseDI	GACNNNNNNGTC	1 cut(s)	89
Eam1104I	CTCTTC	2 cut(s)	288, 296
EarI	CTCTTC	2 cut(s)	288, 296
Ecl136II	GAGCTC	1 cut(s)	308
Eco130I	CCWWGG	1 cut(s)	206
Eco24I	GRGCYC	3 cut(s)	33, 45, 310
Eco53kI	GAGCTC	1 cut(s)	308
Eco88I	CYCGRG	1 cut(s)	32
EcoICRI	GAGCTC	1 cut(s)	308
EcoT14I	CCWWGG	1 cut(s)	206
EcoT38I	GRGCYC	3 cut(s)	33, 45, 310
ErhI	CCWWGG	1 cut(s)	206
FaeI	CATG	3 cut(s)	83, 204, 210
FatI	CATG	3 cut(s)	79, 200, 206
FauNDI	CATATG	1 cut(s)	252
FbaI	TGATCA	1 cut(s)	145
FokI	GGATG	1 cut(s)	183
FriOI	GRGCYC	3 cut(s)	33, 45, 310
FspBI	CTAG	3 cut(s)	311, 345, 399
HaeIII	GGCC	1 cut(s)	31
HgaI	GACGC	1 cut(s)	85
Hin1II	CATG	3 cut(s)	83, 204, 210
HphI	GGTGA	2 cut(s)	349, 359
Hpy166II	GTNNAC	1 cut(s)	357
Hpy188I	TCNGA	2 cut(s)	14, 443
Hpy188III	TCNNGA	1 cut(s)	311
Hpy8I	GTNNAC	1 cut(s)	357
HpyAV	CCTTC	1 cut(s)	415
HpyF10VI	GCNNNNNNNGC	1 cut(s)	345
HpyF3I	CTNAG	2 cut(s)	18, 324
Hsp92II	CATG	3 cut(s)	83, 204, 210
Ksp22I	TGATCA	1 cut(s)	145
Kzo9I	GATC	3 cut(s)	62, 145, 403
LpnPI	CCDG	4 cut(s)	134, 148, 192, 314
LweI	GCATC	1 cut(s)	348
MaeI	CTAG	3 cut(s)	311, 345, 399
MaeIII	GTNAC	3 cut(s)	154, 319, 365
MalI	GATC	3 cut(s)	64, 147, 405
MboI	GATC	3 cut(s)	62, 145, 403
MboII	GAAGA	2 cut(s)	305, 313
MflI	RGATCY	1 cut(s)	62
MhlI	GDGCHC	3 cut(s)	33, 45, 310
MluCI	AATT	5 cut(s)	98, 164, 244, 280, 451
MnlI	CCTC	6 cut(s)	20, 200, 278, 291, 359, 449
MslI	CAYNNNNRTG	2 cut(s)	205, 222
MvnI	CGCG	1 cut(s)	89
MwoI	GCNNNNNNNGC	1 cut(s)	345
NcoI	CCATGG	1 cut(s)	206
NdeI	CATATG	1 cut(s)	252
NdeII	GATC	3 cut(s)	62, 145, 403
NheI	GCTAGC	1 cut(s)	344
NlaIII	CATG	3 cut(s)	83, 204, 210
NlaIV	GGNNCC	2 cut(s)	6, 31
NmuCI	GTSAC	1 cut(s)	365
OliI	CACNNNNGTG	1 cut(s)	222
PflMI	CCANNNNNTGG	1 cut(s)	212
PsiI	TTATAA	1 cut(s)	104
Psp124BI	GAGCTC	1 cut(s)	310
PspN4I	GGNNCC	2 cut(s)	6, 31
PspOMI	GGGCCC	1 cut(s)	29
PspPI	GGNCC	2 cut(s)	29, 30
PsuI	RGATCY	1 cut(s)	62
RsaI	GTAC	1 cut(s)	380
RsaNI	GTAC	1 cut(s)	379
RseI	CAYNNNNRTG	2 cut(s)	205, 222
SacI	GAGCTC	1 cut(s)	310
Sau3AI	GATC	3 cut(s)	62, 145, 403
Sau96I	GGNCC	2 cut(s)	29, 30
SduI	GDGCHC	3 cut(s)	33, 45, 310
SfaNI	GCATC	1 cut(s)	348
SmiMI	CAYNNNNRTG	2 cut(s)	205, 222
SmlI	CTYRAG	2 cut(s)	262, 350
SmoI	CTYRAG	2 cut(s)	262, 350
Sse9I	AATT	5 cut(s)	98, 164, 244, 280, 451
SsiI	CCGC	2 cut(s)	54, 89
SspMI	CTAG	3 cut(s)	311, 345, 399
SstI	GAGCTC	1 cut(s)	310
StyI	CCWWGG	1 cut(s)	206
TasI	AATT	5 cut(s)	98, 164, 244, 280, 451
TatI	WGTACW	1 cut(s)	378
TseFI	GTSAC	1 cut(s)	365
Tsp45I	GTSAC	1 cut(s)	365
TspDTI	ATGAA	3 cut(s)	185, 306, 408
Van91I	CCANNNNNTGG	1 cut(s)	212
XapI	RAATTY	2 cut(s)	164, 280
XbaI	TCTAGA	1 cut(s)	310
XspI	CTAG	3 cut(s)	311, 345, 399

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.