RchiOBHm_Chr3g0458131

Cell division control protein 24, OB domain 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0017434
Physical Location & Seq
Reverse (-)
6926682 .. 6927001
320 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 231 bp
ATGCAGGAATGTGTGAAGCAATTGCGAAAGAAGTATAAGCGAAGGAAGCTTTCGAACACTGTGACTATTGATTCCATTTACAAGAAGAATTTCTTGTCCTTGAACAGTGTTTTGGAAGTAGTGATTGTCGACGTTTTTGTCCTCCCTGGTCATTTGCACCAACATTTATCTGCTTTCCCTGTGGATTTTTGGAGCCCCAGTACCATTGATCTTTATCTCCACCGCAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CDC24_OB1 CDC24_OB2 CDC24_OB3

Protein Analysis

76

Amino Acids

8.97

Weight (kDa)

9.78

Isoelectric Point (pI)

40.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CDC24_OB1 PF17246 6 - 50 6.1e-14 Cell division control protein 24, OB domain 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 137
AccI GTMKAC 1 cut(s) 129
AciI CCGC 1 cut(s) 223
AcsI RAATTY 1 cut(s) 88
AfaI GTAC 1 cut(s) 202
AgsI TTSAA 1 cut(s) 103
AjnI CCWGG 1 cut(s) 145
AjuI GAANNNNNNNTTGG 2 cut(s) 95, 127
AluBI AGCT 1 cut(s) 49
AluI AGCT 1 cut(s) 49
ApoI RAATTY 1 cut(s) 88
Asp700I GAANNNNTTC 1 cut(s) 89
AsuII TTCGAA 1 cut(s) 53
BanII GRGCYC 1 cut(s) 197
BciT130I CCWGG 1 cut(s) 147
Bme1390I CCNGG 1 cut(s) 147
BmiI GGNNCC 1 cut(s) 194
BmrFI CCNGG 1 cut(s) 147
BmrI ACTGGG 1 cut(s) 192
BmuI ACTGGG 1 cut(s) 192
Bpu14I TTCGAA 1 cut(s) 53
BsaBI GATNNNNATC 1 cut(s) 213
BsaJI CCNNGG 1 cut(s) 145
BsaXI ACNNNNNCTCC 2 cut(s) 184, 214
Bse1I ACTGG 1 cut(s) 198
Bse8I GATNNNNATC 1 cut(s) 213
BseBI CCWGG 1 cut(s) 147
BseDI CCNNGG 1 cut(s) 145
BseJI GATNNNNATC 1 cut(s) 213
BseNI ACTGG 1 cut(s) 198
Bsp119I TTCGAA 1 cut(s) 53
Bsp1286I GDGCHC 1 cut(s) 197
Bsp143I GATC 1 cut(s) 208
BspACI CCGC 1 cut(s) 223
BspLI GGNNCC 1 cut(s) 194
BspT104I TTCGAA 1 cut(s) 53
BsrI ACTGG 1 cut(s) 198
BssECI CCNNGG 1 cut(s) 145
BssMI GATC 1 cut(s) 208
Bst2UI CCWGG 1 cut(s) 147
Bst4CI ACNGT 2 cut(s) 61, 107
BstBI TTCGAA 1 cut(s) 53
BstKTI GATC 1 cut(s) 211
BstMBI GATC 1 cut(s) 208
BstMWI GCNNNNNNNGC 1 cut(s) 46
BstNI CCWGG 1 cut(s) 147
BstSCI CCNGG 1 cut(s) 145
BtsIMutI CAGTG 2 cut(s) 57, 112
Csp6I GTAC 1 cut(s) 201
CviJI RGCY 2 cut(s) 49, 195
CviKI_1 RGCY 2 cut(s) 49, 195
CviQI GTAC 1 cut(s) 201
DpnI GATC 1 cut(s) 210
DpnII GATC 1 cut(s) 208
DrdI GACNNNNNNGTC 1 cut(s) 137
DseDI GACNNNNNNGTC 1 cut(s) 137
Eco24I GRGCYC 1 cut(s) 197
EcoRII CCWGG 1 cut(s) 145
EcoT38I GRGCYC 1 cut(s) 197
FaiI YATR 1 cut(s) 36
FalI AAGNNNNNCTT 2 cut(s) 77, 109
FblI GTMKAC 1 cut(s) 129
FriOI GRGCYC 1 cut(s) 197
HincII GTYRAC 1 cut(s) 130
HindII GTYRAC 1 cut(s) 130
HindIII AAGCTT 1 cut(s) 47
HinfI GANTC 1 cut(s) 71
Hpy166II GTNNAC 1 cut(s) 130
Hpy8I GTNNAC 1 cut(s) 130
Hpy99I CGWCG 1 cut(s) 134
HpyAV CCTTC 1 cut(s) 36
HpyCH4III ACNGT 2 cut(s) 61, 107
HpyCH4IV ACGT 1 cut(s) 132
HpyCH4V TGCA 2 cut(s) 4, 157
HpyF10VI GCNNNNNNNGC 1 cut(s) 46
HpySE526I ACGT 1 cut(s) 132
Kzo9I GATC 1 cut(s) 208
LmnI GCTCC 1 cut(s) 192
LpnPI CCDG 4 cut(s) 132, 159, 192, 211
MaeII ACGT 1 cut(s) 132
MaeIII GTNAC 1 cut(s) 61
MalI GATC 1 cut(s) 210
MboI GATC 1 cut(s) 208
MboII GAAGA 1 cut(s) 97
MfeI CAATTG 1 cut(s) 20
MhlI GDGCHC 1 cut(s) 197
MluCI AATT 2 cut(s) 20, 88
MnlI CCTC 1 cut(s) 152
MroXI GAANNNNTTC 1 cut(s) 89
MspR9I CCNGG 1 cut(s) 147
MunI CAATTG 1 cut(s) 20
MvaI CCWGG 1 cut(s) 147
MwoI GCNNNNNNNGC 1 cut(s) 46
NdeII GATC 1 cut(s) 208
NlaIV GGNNCC 1 cut(s) 194
NmuCI GTSAC 1 cut(s) 61
NspV TTCGAA 1 cut(s) 53
PdmI GAANNNNTTC 1 cut(s) 89
PfeI GAWTC 1 cut(s) 71
Psp6I CCWGG 1 cut(s) 145
PspGI CCWGG 1 cut(s) 145
PspN4I GGNNCC 1 cut(s) 194
RsaI GTAC 1 cut(s) 202
RsaNI GTAC 1 cut(s) 201
SalI GTCGAC 1 cut(s) 128
Sau3AI GATC 1 cut(s) 208
ScrFI CCNGG 1 cut(s) 147
SduI GDGCHC 1 cut(s) 197
SetI ASST 2 cut(s) 51, 135
SfuI TTCGAA 1 cut(s) 53
SgeI CNNG 8 cut(s) 17, 94, 106, 112, 158, 159, 191, 210
Sse9I AATT 2 cut(s) 20, 88
SsiI CCGC 1 cut(s) 223
StyD4I CCNGG 1 cut(s) 145
TaaI ACNGT 2 cut(s) 61, 107
TaiI ACGT 1 cut(s) 135
TaqI TCGA 2 cut(s) 53, 129
TasI AATT 2 cut(s) 20, 88
TfiI GAWTC 1 cut(s) 71
TscAI CASTG 2 cut(s) 64, 112
TseFI GTSAC 1 cut(s) 61
Tsp45I GTSAC 1 cut(s) 61
TspRI CASTG 2 cut(s) 64, 112
XapI RAATTY 1 cut(s) 88
XmiI GTMKAC 1 cut(s) 129
XmnI GAANNNNTTC 1 cut(s) 89
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.