Rh1AG106500

Cell division control protein 24, OB domain 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0017434
Physical Location & Seq
Forward (+)
18553783 .. 18557052
3270 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG106500.1

Sequence Viewer

Length: 216 bp
ATGCTTTTGCTCTCCGATCTGTCCCGGGCGTGGCATGAGCAAAATAGGGACAGGCCTACGAAGAAAATGTCGGAATGTGTAAAGCAATTGCGAGAGAAGTATAAGCGAAGGAAGCTTTCGAACACTGTGACTATTGATTCCATTTACAAGAAGAATTTCTTGTCCTTGAACAGTGTTTTGGAAGTAGTGATTGTCGATTTAAAATTAAATGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CDC24_OB1 CDC24_OB2 CDC24_OB3

Protein Analysis

71

Amino Acids

8.43

Weight (kDa)

9.93

Isoelectric Point (pI)

48.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CDC24_OB1 PF17246 3 - 69 8.8e-20 Cell division control protein 24, OB domain 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 154
AfiI CCNNNNNNNGG 1 cut(s) 30
AgsI TTSAA 1 cut(s) 169
AjuI GAANNNNNNNTTGG 2 cut(s) 161, 193
AluBI AGCT 1 cut(s) 115
AluI AGCT 1 cut(s) 115
Ama87I CYCGRG 1 cut(s) 24
AoxI GGCC 1 cut(s) 53
ApoI RAATTY 1 cut(s) 154
ArsI GACNNNNNNTTYG 2 cut(s) 53, 85
Asp700I GAANNNNTTC 1 cut(s) 155
AsuC2I CCSGG 2 cut(s) 25, 26
AsuII TTCGAA 1 cut(s) 119
AvaI CYCGRG 1 cut(s) 24
BcnI CCSGG 2 cut(s) 25, 26
Bme1390I CCNGG 2 cut(s) 25, 26
BmeT110I CYCGRG 1 cut(s) 24
BmrFI CCNGG 2 cut(s) 25, 26
Bpu14I TTCGAA 1 cut(s) 119
BpuMI CCSGG 2 cut(s) 25, 26
BsaJI CCNNGG 1 cut(s) 24
Bsc4I CCNNNNNNNGG 1 cut(s) 30
BseDI CCNNGG 1 cut(s) 24
BseLI CCNNNNNNNGG 1 cut(s) 30
BshFI GGCC 1 cut(s) 55
BsiHKCI CYCGRG 1 cut(s) 24
BsiSI CCGG 1 cut(s) 25
BslFI GGGAC 2 cut(s) 7, 62
BslI CCNNNNNNNGG 1 cut(s) 30
BsmFI GGGAC 2 cut(s) 7, 62
BsnI GGCC 1 cut(s) 55
BsoBI CYCGRG 1 cut(s) 24
Bsp119I TTCGAA 1 cut(s) 119
Bsp143I GATC 1 cut(s) 16
BspANI GGCC 1 cut(s) 55
BspT104I TTCGAA 1 cut(s) 119
BssECI CCNNGG 1 cut(s) 24
BssMI GATC 1 cut(s) 16
Bst4CI ACNGT 2 cut(s) 127, 173
BstBI TTCGAA 1 cut(s) 119
BstKTI GATC 1 cut(s) 19
BstMBI GATC 1 cut(s) 16
BstMWI GCNNNNNNNGC 1 cut(s) 112
BstSCI CCNGG 2 cut(s) 23, 24
BsuRI GGCC 1 cut(s) 55
BtsIMutI CAGTG 2 cut(s) 123, 178
Cfr9I CCCGGG 1 cut(s) 24
CviAII CATG 1 cut(s) 35
CviJI RGCY 2 cut(s) 55, 115
CviKI_1 RGCY 2 cut(s) 55, 115
DpnI GATC 1 cut(s) 18
DpnII GATC 1 cut(s) 16
DraI TTTAAA 1 cut(s) 201
Eco147I AGGCCT 1 cut(s) 55
Eco88I CYCGRG 1 cut(s) 24
FaeI CATG 1 cut(s) 38
FaiI YATR 3 cut(s) 36, 102, 214
FalI AAGNNNNNCTT 2 cut(s) 143, 175
FaqI GGGAC 2 cut(s) 7, 62
FatI CATG 1 cut(s) 34
HaeIII GGCC 1 cut(s) 55
HapII CCGG 1 cut(s) 25
Hin1II CATG 1 cut(s) 38
HindIII AAGCTT 1 cut(s) 113
HinfI GANTC 1 cut(s) 137
HpaII CCGG 1 cut(s) 25
Hpy188I TCNGA 2 cut(s) 16, 73
HpyAV CCTTC 1 cut(s) 102
HpyCH4III ACNGT 2 cut(s) 127, 173
HpyF10VI GCNNNNNNNGC 1 cut(s) 112
Hsp92II CATG 1 cut(s) 38
Kzo9I GATC 1 cut(s) 16
LpnPI CCDG 2 cut(s) 37, 38
MaeIII GTNAC 1 cut(s) 127
MalI GATC 1 cut(s) 18
MboI GATC 1 cut(s) 16
MboII GAAGA 2 cut(s) 73, 163
MfeI CAATTG 1 cut(s) 86
MluCI AATT 3 cut(s) 86, 154, 203
MmeI TCCRAC 1 cut(s) 51
MroXI GAANNNNTTC 1 cut(s) 155
MseI TTAA 2 cut(s) 200, 206
MspI CCGG 1 cut(s) 25
MspR9I CCNGG 2 cut(s) 25, 26
MunI CAATTG 1 cut(s) 86
MwoI GCNNNNNNNGC 1 cut(s) 112
NciI CCSGG 2 cut(s) 25, 26
NdeII GATC 1 cut(s) 16
NlaIII CATG 1 cut(s) 38
NmuCI GTSAC 1 cut(s) 127
NspV TTCGAA 1 cut(s) 119
PceI AGGCCT 1 cut(s) 55
PdmI GAANNNNTTC 1 cut(s) 155
PfeI GAWTC 1 cut(s) 137
SaqAI TTAA 2 cut(s) 200, 206
Sau3AI GATC 1 cut(s) 16
ScrFI CCNGG 2 cut(s) 25, 26
SetI ASST 1 cut(s) 117
SfuI TTCGAA 1 cut(s) 119
SmaI CCCGGG 1 cut(s) 26
Sse9I AATT 3 cut(s) 86, 154, 203
SseBI AGGCCT 1 cut(s) 55
StuI AGGCCT 1 cut(s) 55
StyD4I CCNGG 2 cut(s) 23, 24
TaaI ACNGT 2 cut(s) 127, 173
TaqI TCGA 2 cut(s) 119, 195
TasI AATT 3 cut(s) 86, 154, 203
TfiI GAWTC 1 cut(s) 137
Tru1I TTAA 2 cut(s) 200, 206
Tru9I TTAA 2 cut(s) 200, 206
TscAI CASTG 2 cut(s) 130, 178
TseFI GTSAC 1 cut(s) 127
Tsp45I GTSAC 1 cut(s) 127
TspMI CCCGGG 1 cut(s) 24
TspRI CASTG 2 cut(s) 130, 178
XapI RAATTY 1 cut(s) 154
XmaI CCCGGG 1 cut(s) 24
XmnI GAANNNNTTC 1 cut(s) 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.