Rh2AG284900

Cell division control protein 24, OB domain 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0017434
Physical Location & Seq
Forward (+)
34741628 .. 34742158
531 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG284900.1

Sequence Viewer

Length: 309 bp
ATGGGGCGGAGACGGCTCGACCCAGCTGGAATTGGATCGCCTCTCGGATTCTCAAGACCTGCAGCACCTACTCCAGCGGCGTTACGACGACGATTTTTCTCTATGATCTCTCACAGGGATAGGCCTATGAAGAAAATGCCAGAATGCAGGAAGCAATTGCGAAAGAAGAATAAGCGAAGGAACCATTCGAACAATGTGACCATTGATTCCATTTACGAGAAGAATTTCTTGTCCTTGAATAGTGTGTTGGAAGCAGTGATTGTCAACGTTTTTGTTCTCCCTGGTAATCTGGTGACTGAAGAACTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CDC24_OB1 CDC24_OB2 CDC24_OB3

Protein Analysis

102

Amino Acids

11.66

Weight (kDa)

11.34

Isoelectric Point (pI)

82.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CDC24_OB1 PF17246 38 - 96 6.9e-15 Cell division control protein 24, OB domain 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 67
AciI CCGC 2 cut(s) 7, 77
AclI AACGTT 1 cut(s) 267
AclWI GGATC 1 cut(s) 43
AcsI RAATTY 1 cut(s) 223
AgsI TTSAA 1 cut(s) 238
AjnI CCWGG 1 cut(s) 280
AjuI GAANNNNNNNTTGG 2 cut(s) 230, 262
AluBI AGCT 1 cut(s) 26
AluI AGCT 1 cut(s) 26
Alw26I GTCTC 1 cut(s) 4
AlwI GGATC 1 cut(s) 43
AoxI GGCC 1 cut(s) 122
ApeKI GCWGC 1 cut(s) 62
ApoI RAATTY 1 cut(s) 223
Asp700I GAANNNNTTC 1 cut(s) 224
AsuHPI GGTGA 1 cut(s) 304
AsuII TTCGAA 1 cut(s) 188
BbvI GCAGC 1 cut(s) 74
BceAI ACGGC 1 cut(s) 29
BciT130I CCWGG 1 cut(s) 282
BcoDI GTCTC 1 cut(s) 4
BfmI CTRYAG 2 cut(s) 60, 305
BfuAI ACCTGC 1 cut(s) 67
BisI GCNGC 2 cut(s) 63, 78
BlsI GCNGC 2 cut(s) 64, 79
Bme1390I CCNGG 1 cut(s) 282
BmiI GGNNCC 1 cut(s) 182
BmrFI CCNGG 1 cut(s) 282
BpmI CTGGAG 1 cut(s) 57
Bpu14I TTCGAA 1 cut(s) 188
BpuEI CTTGAG 1 cut(s) 37
BsaJI CCNNGG 1 cut(s) 280
BseBI CCWGG 1 cut(s) 282
BseDI CCNNGG 1 cut(s) 280
BseXI GCAGC 1 cut(s) 74
BseYI CCCAGC 1 cut(s) 22
BshFI GGCC 1 cut(s) 124
BsmAI GTCTC 1 cut(s) 4
BsmBI CGTCTC 1 cut(s) 4
BsmI GAATGC 1 cut(s) 149
BsnI GGCC 1 cut(s) 124
Bsp119I TTCGAA 1 cut(s) 188
Bsp143I GATC 2 cut(s) 35, 105
BspACI CCGC 2 cut(s) 7, 77
BspANI GGCC 1 cut(s) 124
BspLI GGNNCC 1 cut(s) 182
BspMAI CTGCAG 1 cut(s) 64
BspMI ACCTGC 1 cut(s) 67
BspPI GGATC 1 cut(s) 43
BspT104I TTCGAA 1 cut(s) 188
BssECI CCNNGG 1 cut(s) 280
BssMI GATC 2 cut(s) 35, 105
Bst2UI CCWGG 1 cut(s) 282
BstBI TTCGAA 1 cut(s) 188
BstKTI GATC 2 cut(s) 38, 108
BstMAI GTCTC 1 cut(s) 4
BstMBI GATC 2 cut(s) 35, 105
BstMWI GCNNNNNNNGC 1 cut(s) 13
BstNI CCWGG 1 cut(s) 282
BstSCI CCNGG 1 cut(s) 280
BstSFI CTRYAG 2 cut(s) 60, 305
BstV1I GCAGC 1 cut(s) 74
BsuRI GGCC 1 cut(s) 124
BtsI GCAGTG 1 cut(s) 261
BtsIMutI CAGTG 1 cut(s) 261
BveI ACCTGC 1 cut(s) 67
CviJI RGCY 3 cut(s) 16, 26, 124
CviKI_1 RGCY 3 cut(s) 16, 26, 124
DpnI GATC 2 cut(s) 37, 107
DpnII GATC 2 cut(s) 35, 105
EciI GGCGGA 1 cut(s) 22
Eco147I AGGCCT 1 cut(s) 124
EcoRII CCWGG 1 cut(s) 280
Esp3I CGTCTC 1 cut(s) 4
FaiI YATR 3 cut(s) 104, 128, 307
FalI AAGNNNNNCTT 2 cut(s) 212, 244
Fnu4HI GCNGC 2 cut(s) 63, 78
Fsp4HI GCNGC 2 cut(s) 63, 78
GluI GCNGC 2 cut(s) 63, 78
GsaI CCCAGC 1 cut(s) 26
GsuI CTGGAG 1 cut(s) 57
HaeIII GGCC 1 cut(s) 124
HincII GTYRAC 1 cut(s) 265
HindII GTYRAC 1 cut(s) 265
HinfI GANTC 2 cut(s) 48, 206
HphI GGTGA 1 cut(s) 304
Hpy166II GTNNAC 1 cut(s) 265
Hpy188I TCNGA 1 cut(s) 47
Hpy188III TCNNGA 1 cut(s) 54
Hpy8I GTNNAC 1 cut(s) 265
Hpy99I CGWCG 2 cut(s) 90, 93
HpyAV CCTTC 1 cut(s) 171
HpyCH4IV ACGT 1 cut(s) 267
HpyCH4V TGCA 2 cut(s) 62, 147
HpyF10VI GCNNNNNNNGC 1 cut(s) 13
HpySE526I ACGT 1 cut(s) 267
Kzo9I GATC 2 cut(s) 35, 105
Lsp1109I GCAGC 1 cut(s) 74
MaeII ACGT 1 cut(s) 267
MaeIII GTNAC 3 cut(s) 81, 196, 292
MalI GATC 2 cut(s) 37, 107
MboI GATC 2 cut(s) 35, 105
MboII GAAGA 3 cut(s) 142, 178, 232
MfeI CAATTG 1 cut(s) 155
MluCI AATT 3 cut(s) 30, 155, 223
MmeI TCCRAC 1 cut(s) 228
MnlI CCTC 1 cut(s) 51
MroXI GAANNNNTTC 1 cut(s) 224
MspA1I CMGCKG 2 cut(s) 26, 77
MspR9I CCNGG 1 cut(s) 282
MunI CAATTG 1 cut(s) 155
Mva1269I GAATGC 1 cut(s) 149
MvaI CCWGG 1 cut(s) 282
MwoI GCNNNNNNNGC 1 cut(s) 13
NdeII GATC 2 cut(s) 35, 105
NlaIV GGNNCC 1 cut(s) 182
NmuCI GTSAC 2 cut(s) 196, 292
NspV TTCGAA 1 cut(s) 188
PceI AGGCCT 1 cut(s) 124
PctI GAATGC 1 cut(s) 149
PdmI GAANNNNTTC 1 cut(s) 224
PfeI GAWTC 2 cut(s) 48, 206
PkrI GCNGC 2 cut(s) 64, 79
Psp1406I AACGTT 1 cut(s) 267
Psp6I CCWGG 1 cut(s) 280
PspFI CCCAGC 1 cut(s) 22
PspGI CCWGG 1 cut(s) 280
PspN4I GGNNCC 1 cut(s) 182
PstI CTGCAG 1 cut(s) 64
PvuII CAGCTG 1 cut(s) 26
SatI GCNGC 2 cut(s) 63, 78
Sau3AI GATC 2 cut(s) 35, 105
ScrFI CCNGG 1 cut(s) 282
SetI ASST 4 cut(s) 28, 61, 70, 270
SfcI CTRYAG 2 cut(s) 60, 305
SfuI TTCGAA 1 cut(s) 188
SmlI CTYRAG 1 cut(s) 52
SmoI CTYRAG 1 cut(s) 52
Sse9I AATT 3 cut(s) 30, 155, 223
SseBI AGGCCT 1 cut(s) 124
SsiI CCGC 2 cut(s) 7, 77
StuI AGGCCT 1 cut(s) 124
StyD4I CCNGG 1 cut(s) 280
TaiI ACGT 1 cut(s) 270
TaqI TCGA 2 cut(s) 18, 188
TasI AATT 3 cut(s) 30, 155, 223
TauI GCSGC 1 cut(s) 80
TfiI GAWTC 2 cut(s) 48, 206
TscAI CASTG 1 cut(s) 261
TseFI GTSAC 2 cut(s) 196, 292
TseI GCWGC 1 cut(s) 62
Tsp45I GTSAC 2 cut(s) 196, 292
TspDTI ATGAA 1 cut(s) 143
TspRI CASTG 1 cut(s) 261
XapI RAATTY 1 cut(s) 223
XmnI GAANNNNTTC 1 cut(s) 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.