Rroxscaffold_2G00123550

Cell division control protein 24, OB domain 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0017434
Physical Location & Seq
Reverse (-)
57382630 .. 57383202
573 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00123550.1

Sequence Viewer

Length: 471 bp
ATGGAAATGAACTTAGTCGACTCGCCGGATCGGAATCTGCAGCCACAAGAAGAAGACCCCCTCCTCAAATTCATTGATTACGCTAGGTCCGCTCTCTTGCTCGAAACCAACGAAGATTCAGATCCGAACAGAAATGGCGGAGACGCCCAGCCCAGCCGGAATTGGATCGCCTCTCGGATTCTCAAGACCCGTAGCACCTATTCCAGTGCGTTACGGGGACGATTTTGCTCTCCGATCTCTCACAAGTATGGGTTTTTAGCTAAATTAGGGACAGCCTGTAAAGAAAATGTCGAATGCGGGAAGCAATTGCGAAAGAAGAATAAGCGAAGGAAGCATTTGAACACCGTGACCATTGATTCCATTTACGAGAAGAATTTCTTGTCCTTGAATAGTGTGTTGGAAGCAATGAATGTTGACATTTTTGTTCTCCCGGTAATCGGTGACCGAGGAACCGTAGAATTAAGGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CDC24_OB1 CDC24_OB2 CDC24_OB3

Protein Analysis

156

Amino Acids

17.74

Weight (kDa)

8.79

Isoelectric Point (pI)

56.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CDC24_OB1 PF17246 22 - 144 1.9e-21 Cell division control protein 24, OB domain 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 92
AccI GTMKAC 1 cut(s) 18
AciI CCGC 3 cut(s) 90, 138, 297
AclWI GGATC 3 cut(s) 36, 116, 173
AcsI RAATTY 2 cut(s) 68, 373
AcyI GRCGYC 1 cut(s) 144
AfiI CCNNNNNNNGG 1 cut(s) 437
AgsI TTSAA 2 cut(s) 340, 388
AjuI GAANNNNNNNTTGG 2 cut(s) 380, 412
AluBI AGCT 1 cut(s) 260
AluI AGCT 1 cut(s) 260
Alw26I GTCTC 1 cut(s) 135
AlwI GGATC 3 cut(s) 36, 116, 173
ApeKI GCWGC 1 cut(s) 40
ApoI RAATTY 2 cut(s) 68, 373
Asp700I GAANNNNTTC 1 cut(s) 374
AspS9I GGNCC 1 cut(s) 87
AsuC2I CCSGG 1 cut(s) 431
AsuHPI GGTGA 1 cut(s) 452
AvaII GGWCC 1 cut(s) 87
BbsI GAAGAC 1 cut(s) 60
BbvI GCAGC 1 cut(s) 52
BcnI CCSGG 1 cut(s) 431
BcoDI GTCTC 1 cut(s) 135
BfaI CTAG 1 cut(s) 84
BfmI CTRYAG 1 cut(s) 38
BisI GCNGC 1 cut(s) 41
BlsI GCNGC 1 cut(s) 42
Bme1390I CCNGG 1 cut(s) 431
Bme18I GGWCC 1 cut(s) 87
BmgT120I GGNCC 1 cut(s) 87
BmiI GGNNCC 1 cut(s) 451
BmrFI CCNGG 1 cut(s) 431
BpiI GAAGAC 1 cut(s) 60
BpuEI CTTGAG 1 cut(s) 167
BpuMI CCSGG 1 cut(s) 431
BsaBI GATNNNNATC 2 cut(s) 33, 120
BsaHI GRCGYC 1 cut(s) 144
BsaJI CCNNGG 1 cut(s) 445
Bsc4I CCNNNNNNNGG 1 cut(s) 437
Bse1I ACTGG 1 cut(s) 204
Bse3DI GCAATG 1 cut(s) 411
Bse8I GATNNNNATC 2 cut(s) 33, 120
BseDI CCNNGG 1 cut(s) 445
BseJI GATNNNNATC 2 cut(s) 33, 120
BseLI CCNNNNNNNGG 1 cut(s) 437
BseMI GCAATG 1 cut(s) 411
BseNI ACTGG 1 cut(s) 204
BseRI GAGGAG 1 cut(s) 53
BseXI GCAGC 1 cut(s) 52
BseYI CCCAGC 2 cut(s) 147, 152
BsiSI CCGG 3 cut(s) 26, 157, 431
BslFI GGGAC 2 cut(s) 231, 283
BslI CCNNNNNNNGG 1 cut(s) 437
BsmAI GTCTC 1 cut(s) 135
BsmBI CGTCTC 1 cut(s) 135
BsmFI GGGAC 2 cut(s) 231, 283
BsmI GAATGC 1 cut(s) 299
Bsp143I GATC 4 cut(s) 28, 121, 165, 234
BspACI CCGC 3 cut(s) 90, 138, 297
BspLI GGNNCC 1 cut(s) 451
BspMAI CTGCAG 1 cut(s) 42
BspPI GGATC 3 cut(s) 36, 116, 173
BsrBI CCGCTC 1 cut(s) 92
BsrDI GCAATG 1 cut(s) 411
BsrI ACTGG 1 cut(s) 204
BssECI CCNNGG 1 cut(s) 445
BssMI GATC 4 cut(s) 28, 121, 165, 234
BssNI GRCGYC 1 cut(s) 144
Bst4CI ACNGT 2 cut(s) 346, 454
BstACI GRCGYC 1 cut(s) 144
BstDEI CTNAG 1 cut(s) 13
BstEII GGTNACC 1 cut(s) 440
BstKTI GATC 4 cut(s) 31, 124, 168, 237
BstMAI GTCTC 1 cut(s) 135
BstMBI GATC 4 cut(s) 28, 121, 165, 234
BstMWI GCNNNNNNNGC 2 cut(s) 89, 331
BstPI GGTNACC 1 cut(s) 440
BstSCI CCNGG 1 cut(s) 429
BstSFI CTRYAG 1 cut(s) 38
BstV1I GCAGC 1 cut(s) 52
BstV2I GAAGAC 1 cut(s) 60
BstX2I RGATCY 1 cut(s) 121
BstYI RGATCY 1 cut(s) 121
BtsIMutI CAGTG 1 cut(s) 211
Cfr13I GGNCC 1 cut(s) 87
CseI GACGC 1 cut(s) 152
CviJI RGCY 5 cut(s) 43, 151, 156, 260, 275
CviKI_1 RGCY 5 cut(s) 43, 151, 156, 260, 275
DdeI CTNAG 1 cut(s) 13
DpnI GATC 4 cut(s) 30, 123, 167, 236
DpnII GATC 4 cut(s) 28, 121, 165, 234
EciI GGCGGA 1 cut(s) 153
Eco47I GGWCC 1 cut(s) 87
Eco91I GGTNACC 1 cut(s) 440
EcoO65I GGTNACC 1 cut(s) 440
Esp3I CGTCTC 1 cut(s) 135
FaiI YATR 1 cut(s) 249
FalI AAGNNNNNCTT 2 cut(s) 362, 394
FaqI GGGAC 2 cut(s) 231, 283
FauI CCCGC 1 cut(s) 290
FblI GTMKAC 1 cut(s) 18
Fnu4HI GCNGC 1 cut(s) 41
Fsp4HI GCNGC 1 cut(s) 41
FspBI CTAG 1 cut(s) 84
GluI GCNGC 1 cut(s) 41
GsaI CCCAGC 2 cut(s) 151, 156
HapII CCGG 3 cut(s) 26, 157, 431
HgaI GACGC 1 cut(s) 152
Hin1I GRCGYC 1 cut(s) 144
HincII GTYRAC 2 cut(s) 19, 415
HindII GTYRAC 2 cut(s) 19, 415
HinfI GANTC 5 cut(s) 20, 34, 116, 178, 356
HpaII CCGG 3 cut(s) 26, 157, 431
HphI GGTGA 1 cut(s) 452
Hpy166II GTNNAC 2 cut(s) 19, 415
Hpy188I TCNGA 5 cut(s) 33, 121, 126, 177, 234
Hpy188III TCNNGA 1 cut(s) 184
Hpy8I GTNNAC 2 cut(s) 19, 415
HpyAV CCTTC 1 cut(s) 321
HpyCH4III ACNGT 2 cut(s) 346, 454
HpyCH4V TGCA 1 cut(s) 40
HpyF10VI GCNNNNNNNGC 2 cut(s) 89, 331
HpyF3I CTNAG 1 cut(s) 13
Hsp92I GRCGYC 1 cut(s) 144
Kzo9I GATC 4 cut(s) 28, 121, 165, 234
LpnPI CCDG 7 cut(s) 39, 161, 166, 170, 217, 289, 444
Lsp1109I GCAGC 1 cut(s) 52
MaeI CTAG 1 cut(s) 84
MaeIII GTNAC 3 cut(s) 210, 346, 440
MalI GATC 4 cut(s) 30, 123, 167, 236
MbiI CCGCTC 1 cut(s) 92
MboI GATC 4 cut(s) 28, 121, 165, 234
MboII GAAGA 5 cut(s) 62, 65, 125, 328, 382
MfeI CAATTG 1 cut(s) 305
MflI RGATCY 1 cut(s) 121
MluCI AATT 6 cut(s) 68, 160, 263, 305, 373, 458
MlyI GAGTC 1 cut(s) 14
MmeI TCCRAC 1 cut(s) 378
MnlI CCTC 4 cut(s) 71, 74, 181, 440
MroXI GAANNNNTTC 1 cut(s) 374
MseI TTAA 1 cut(s) 461
MslI CAYNNNNRTG 1 cut(s) 246
MspI CCGG 3 cut(s) 26, 157, 431
MspR9I CCNGG 1 cut(s) 431
MunI CAATTG 1 cut(s) 305
Mva1269I GAATGC 1 cut(s) 299
MwoI GCNNNNNNNGC 2 cut(s) 89, 331
NciI CCSGG 1 cut(s) 431
NdeII GATC 4 cut(s) 28, 121, 165, 234
NlaIV GGNNCC 1 cut(s) 451
NmuCI GTSAC 2 cut(s) 346, 440
PcsI WCGNNNNNNNCGW 1 cut(s) 108
PctI GAATGC 1 cut(s) 299
PdmI GAANNNNTTC 1 cut(s) 374
PfeI GAWTC 4 cut(s) 34, 116, 178, 356
PkrI GCNGC 1 cut(s) 42
PleI GAGTC 1 cut(s) 14
PpsI GAGTC 1 cut(s) 14
PspEI GGTNACC 1 cut(s) 440
PspFI CCCAGC 2 cut(s) 147, 152
PspN4I GGNNCC 1 cut(s) 451
PspPI GGNCC 1 cut(s) 87
PstI CTGCAG 1 cut(s) 42
PsuI RGATCY 1 cut(s) 121
RseI CAYNNNNRTG 1 cut(s) 246
SalI GTCGAC 1 cut(s) 17
SaqAI TTAA 1 cut(s) 461
SatI GCNGC 1 cut(s) 41
Sau3AI GATC 4 cut(s) 28, 121, 165, 234
Sau96I GGNCC 1 cut(s) 87
SchI GAGTC 1 cut(s) 14
ScrFI CCNGG 1 cut(s) 431
SetI ASST 3 cut(s) 89, 200, 262
SfcI CTRYAG 1 cut(s) 38
SinI GGWCC 1 cut(s) 87
SmiMI CAYNNNNRTG 1 cut(s) 246
SmlI CTYRAG 1 cut(s) 182
SmoI CTYRAG 1 cut(s) 182
Sse9I AATT 6 cut(s) 68, 160, 263, 305, 373, 458
SsiI CCGC 3 cut(s) 90, 138, 297
SspMI CTAG 1 cut(s) 84
StyD4I CCNGG 1 cut(s) 429
TaaI ACNGT 2 cut(s) 346, 454
TaqI TCGA 3 cut(s) 18, 102, 291
TaqII GACCGA 1 cut(s) 459
TasI AATT 6 cut(s) 68, 160, 263, 305, 373, 458
TfiI GAWTC 4 cut(s) 34, 116, 178, 356
Tru1I TTAA 1 cut(s) 461
Tru9I TTAA 1 cut(s) 461
TscAI CASTG 1 cut(s) 211
TseFI GTSAC 2 cut(s) 346, 440
TseI GCWGC 1 cut(s) 40
Tsp45I GTSAC 2 cut(s) 346, 440
TspDTI ATGAA 3 cut(s) 23, 61, 422
TspRI CASTG 1 cut(s) 211
VpaK11BI GGWCC 1 cut(s) 87
XapI RAATTY 2 cut(s) 68, 373
XmiI GTMKAC 1 cut(s) 18
XmnI GAANNNNTTC 1 cut(s) 374
XspI CTAG 1 cut(s) 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.