Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0017434

Physical Location & Seq

Genomic Coordinates Reverse (-)

59055979 .. 59057735

Gene Structure 1757 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0425100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

ATGGTAGATGCTGTCAGAACCACCATTTTGTCTAAAAGATGGAAGAAAGTGTGGAGAGAGCTTAAAAATCTAGACTTTGACAGCAAAAGGGAATTTCGGAAGTATAAAGGTGGTCCTCATTTTGCAACGTTTGTCAGCCGTGTACTCTACTTTCGTGATGCATCAGACATACAAAAATTCCGTCTTAACATTTCCTGTCCCAAGTGTTTACCTTGCATTGAGGATTGGATTTGCACTGCTGTTTGGTGTAATGTTGTTGAGCTTGATCTTCGTATTAGATTTGAAGATGGGGAGGAAACTTTCATGTTTCCTGAGTGCATCTTTCGGTGCAAAACCCTTGAGGTTTTGAAACTGACTCTGACATTCTGGCAGATCACCTGTGATCCTCCTACATCAGGCTCTTTCCCAAGTCTCAAGTTCCTCCACGTATCAGTTTCTGAACCTGACCAGGAAGTAATGCAGAAGCTTTTCTCTTGCTGCCCTGTACTTGAAGGTTTGACTATAGATGGAACCATTGATGGTGACAGTCGTAATGGTAAGTACAGTTTTATGATCTCTGCTCCGGAACTGAAGACATTGAGAATAGATTTGGAAAATATATGGGAGTTTCTCGATGTTTCTATAGATGCCCCAAAGCTTGAAAACCTTGATCTCAAGCGGCTTGGTTTGACCAATTGTTTTCTAATGGGGAGTGCAAAATCCCTAGTCAATGCCAATATTGCTTTCAGAGAATACTTCAAAATAGTAGGACAGCTTGATCTTTCTAACTTTGCAATGGCACTTCTGGATCAAGTTTCTGATGTTAAATCTCTATCCCTTTCGGCTCATTACTTGGATTGGAGTTGCTGGGAATTGCTAGCTGTTTTTCTCAACAGTGCACCTAGTCTCGAAGATCTTGTCTTAGAAGATAGAGCTGAAGGTCACTCCGAATTTGCAGAGCTTCACTGGAATCCACCAAGTAATGTGCCTATTTGTTTGTCATCACATCTGAGGACTATCTCCTTGAAGGGATTCAAGGGATTTCCGGTTGAGATGGAAATGATAAGGTATCTGTTGAAGAATGGTCATCTGTTGAGTAAGATGACGATTTCTACAGGTCTTCATCTTTTGTATCCGAAACAGGAGGAGTTATACACGGAGTTTATGATGTTCCATAGGGCAACAACATGCCATTTCGAGTTTATGCAGATGCATGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CDC24_OB1 CDC24_OB2 CDC24_OB3

Protein Analysis

399

Amino Acids

46.09

Weight (kDa)

5.82

Isoelectric Point (pI)

42.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_At5g56370	PF24758	74 - 299	1.4e-14	FBD-associated F-box protein At5g56370, LRR repeats
FBD	PF08387	319 - 363	1.6e-13	FBD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017434)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0458131
rosa_multiflora	Rmu_co8048980.1_g000001 Rmu_sc0005082.1_g000001 Rmu_sc0005082.1_g000003
rosa_roxburghii	Rroxscaffold_2G00123550 Rroxscaffold_5G00342510
rosa_rugosa	Rorug02G0025900 Rorug05G0425100
rosa_samantha	Rh1AG106500 Rh2AG284900 Rh2BG071900 Rh2CG073300 Rh2DG309900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	562
AciI	CCGC	1 cut(s)	658
AclI	AACGTT	1 cut(s)	128
AclWI	GGATC	2 cut(s)	377, 795
AcsI	RAATTY	3 cut(s)	92, 176, 929
AcuI	CTGAAG	2 cut(s)	590, 936
AfaI	GTAC	3 cut(s)	144, 486, 542
AfiI	CCNNNNNNNGG	1 cut(s)	395
AgsI	TTSAA	8 cut(s)	284, 349, 491, 641, 739, 1006, 1015, 1057
AjnI	CCWGG	1 cut(s)	447
AjuI	GAANNNNNNNTTGG	2 cut(s)	707, 739
AluBI	AGCT	8 cut(s)	61, 262, 466, 637, 754, 860, 914, 940
AluI	AGCT	8 cut(s)	61, 262, 466, 637, 754, 860, 914, 940
Alw21I	GWGCWC	1 cut(s)	880
Alw26I	GTCTC	2 cut(s)	416, 890
Alw44I	GTGCAC	1 cut(s)	876
AlwI	GGATC	2 cut(s)	377, 795
AlwNI	CAGNNNCTG	1 cut(s)	437
Aor13HI	TCCGGA	1 cut(s)	562
ApaLI	GTGCAC	1 cut(s)	876
ApeKI	GCWGC	1 cut(s)	477
ApoI	RAATTY	3 cut(s)	92, 176, 929
ArsI	GACNNNNNNTTYG	4 cut(s)	166, 198, 882, 914
Asp700I	GAANNNNTTC	2 cut(s)	467, 1010
AspS9I	GGNCC	1 cut(s)	113
AsuHPI	GGTGA	2 cut(s)	367, 533
AsuNHI	GCTAGC	1 cut(s)	856
AvaII	GGWCC	1 cut(s)	113
BaeGI	GKGCMC	1 cut(s)	880
BbsI	GAAGAC	2 cut(s)	578, 1091
Bbv12I	GWGCWC	1 cut(s)	880
BbvI	GCAGC	1 cut(s)	464
BccI	CCATC	5 cut(s)	33, 281, 500, 512, 1027
BceAI	ACGGC	1 cut(s)	123
BciT130I	CCWGG	1 cut(s)	449
BciVI	GTATCC	1 cut(s)	1122
BcoDI	GTCTC	2 cut(s)	416, 890
BfaI	CTAG	4 cut(s)	71, 704, 857, 882
BfmI	CTRYAG	3 cut(s)	501, 621, 1092
BfuI	GTATCC	1 cut(s)	1122
BglII	AGATCT	1 cut(s)	892
BisI	GCNGC	2 cut(s)	478, 659
BlsI	GCNGC	2 cut(s)	479, 660
Bme1390I	CCNGG	1 cut(s)	449
Bme18I	GGWCC	1 cut(s)	113
BmgT120I	GGNCC	1 cut(s)	113
BmiI	GGNNCC	1 cut(s)	511
BmrFI	CCNGG	1 cut(s)	449
BmsI	GCATC	5 cut(s)	148, 170, 327, 616, 1179
BmtI	GCTAGC	1 cut(s)	860
BpiI	GAAGAC	2 cut(s)	578, 1091
BpuEI	CTTGAG	3 cut(s)	359, 398, 638
BsaAI	YACGTR	1 cut(s)	427
BsaWI	WCCGGW	2 cut(s)	562, 1024
Bsc4I	CCNNNNNNNGG	1 cut(s)	395
Bse1I	ACTGG	1 cut(s)	950
Bse3DI	GCAATG	1 cut(s)	780
BseAI	TCCGGA	1 cut(s)	562
BseBI	CCWGG	1 cut(s)	449
BseLI	CCNNNNNNNGG	1 cut(s)	395
BseMI	GCAATG	1 cut(s)	780
BseMII	CTCAG	2 cut(s)	303, 980
BseNI	ACTGG	1 cut(s)	950
BseRI	GAGGAG	1 cut(s)	1139
BseSI	GKGCMC	1 cut(s)	880
BseXI	GCAGC	1 cut(s)	464
BseYI	CCCAGC	1 cut(s)	846
BsiHKAI	GWGCWC	1 cut(s)	880
BsiSI	CCGG	2 cut(s)	563, 1025
BslFI	GGGAC	1 cut(s)	183
BslI	CCNNNNNNNGG	1 cut(s)	395
BsmAI	GTCTC	2 cut(s)	416, 890
BsmFI	GGGAC	1 cut(s)	183
Bsp1286I	GDGCHC	1 cut(s)	880
Bsp13I	TCCGGA	1 cut(s)	562
Bsp143I	GATC	8 cut(s)	265, 372, 382, 552, 649, 757, 787, 892
BspACI	CCGC	1 cut(s)	658
BspCNI	CTCAG	2 cut(s)	304, 981
BspEI	TCCGGA	1 cut(s)	562
BspLI	GGNNCC	1 cut(s)	511
BspOI	GCTAGC	1 cut(s)	860
BspPI	GGATC	2 cut(s)	377, 795
BsrDI	GCAATG	1 cut(s)	780
BsrI	ACTGG	1 cut(s)	950
BssMI	GATC	8 cut(s)	265, 372, 382, 552, 649, 757, 787, 892
Bst2UI	CCWGG	1 cut(s)	449
Bst4CI	ACNGT	3 cut(s)	527, 545, 875
BstBAI	YACGTR	1 cut(s)	427
BstC8I	GCNNGC	1 cut(s)	858
BstDEI	CTNAG	3 cut(s)	312, 901, 989
BstENI	CCTNNNNNAGG	1 cut(s)	393
BstKTI	GATC	8 cut(s)	268, 375, 385, 555, 652, 760, 790, 895
BstMAI	GTCTC	2 cut(s)	416, 890
BstMBI	GATC	8 cut(s)	265, 372, 382, 552, 649, 757, 787, 892
BstMWI	GCNNNNNNNGC	1 cut(s)	719
BstNI	CCWGG	1 cut(s)	449
BstNSI	RCATGY	2 cut(s)	1170, 1196
BstSCI	CCNGG	1 cut(s)	447
BstSFI	CTRYAG	3 cut(s)	501, 621, 1092
BstSLI	GKGCMC	1 cut(s)	880
BstV1I	GCAGC	1 cut(s)	464
BstV2I	GAAGAC	2 cut(s)	578, 1091
BstX2I	RGATCY	1 cut(s)	892
BstYI	RGATCY	1 cut(s)	892
BsuI	GTATCC	1 cut(s)	1122
BtsI	GCAGTG	1 cut(s)	234
BtsIMutI	CAGTG	3 cut(s)	234, 880, 943
Cac8I	GCNNGC	1 cut(s)	858
CaiI	CAGNNNCTG	1 cut(s)	437
Cfr13I	GGNCC	1 cut(s)	113
Csp6I	GTAC	3 cut(s)	143, 485, 541
CviAII	CATG	3 cut(s)	304, 1167, 1193
CviQI	GTAC	3 cut(s)	143, 485, 541
DdeI	CTNAG	3 cut(s)	312, 901, 989
DpnI	GATC	8 cut(s)	267, 374, 384, 554, 651, 759, 789, 894
DpnII	GATC	8 cut(s)	265, 372, 382, 552, 649, 757, 787, 892
Eco47I	GGWCC	1 cut(s)	113
Eco57I	CTGAAG	2 cut(s)	590, 936
EcoNI	CCTNNNNNAGG	1 cut(s)	393
EcoRII	CCWGG	1 cut(s)	447
EcoT22I	ATGCAT	2 cut(s)	163, 1194
FaeI	CATG	3 cut(s)	307, 1170, 1196
FaqI	GGGAC	1 cut(s)	183
FatI	CATG	3 cut(s)	303, 1166, 1192
Fnu4HI	GCNGC	2 cut(s)	478, 659
Fsp4HI	GCNGC	2 cut(s)	478, 659
FspBI	CTAG	4 cut(s)	71, 704, 857, 882
GluI	GCNGC	2 cut(s)	478, 659
GsaI	CCCAGC	1 cut(s)	850
HapII	CCGG	2 cut(s)	563, 1025
Hin1II	CATG	3 cut(s)	307, 1170, 1196
HindIII	AAGCTT	2 cut(s)	464, 635
HinfI	GANTC	3 cut(s)	355, 949, 1011
HpaII	CCGG	2 cut(s)	563, 1025
HphI	GGTGA	2 cut(s)	367, 533
Hpy166II	GTNNAC	3 cut(s)	143, 209, 878
Hpy188III	TCNNGA	7 cut(s)	71, 155, 311, 563, 611, 785, 887
Hpy8I	GTNNAC	3 cut(s)	143, 209, 878
HpyAV	CCTTC	3 cut(s)	485, 911, 1000
HpyCH4III	ACNGT	3 cut(s)	527, 545, 875
HpyCH4IV	ACGT	2 cut(s)	128, 426
HpyF10VI	GCNNNNNNNGC	1 cut(s)	719
HpyF3I	CTNAG	3 cut(s)	312, 901, 989
HpySE526I	ACGT	2 cut(s)	128, 426
Hsp92II	CATG	3 cut(s)	307, 1170, 1196
Kpn2I	TCCGGA	1 cut(s)	562
Kzo9I	GATC	8 cut(s)	265, 372, 382, 552, 649, 757, 787, 892
LmnI	GCTCC	1 cut(s)	565
Lsp1109I	GCAGC	1 cut(s)	464
LweI	GCATC	5 cut(s)	148, 170, 327, 616, 1179
MaeI	CTAG	4 cut(s)	71, 704, 857, 882
MaeII	ACGT	2 cut(s)	128, 426
MaeIII	GTNAC	2 cut(s)	521, 920
MalI	GATC	8 cut(s)	267, 374, 384, 554, 651, 759, 789, 894
MboI	GATC	8 cut(s)	265, 372, 382, 552, 649, 757, 787, 892
MboII	GAAGA	8 cut(s)	55, 260, 296, 583, 902, 917, 1069, 1091
MfeI	CAATTG	1 cut(s)	673
MflI	RGATCY	1 cut(s)	892
MhlI	GDGCHC	1 cut(s)	880
MluCI	AATT	5 cut(s)	92, 176, 673, 851, 929
MlyI	GAGTC	1 cut(s)	349
MnlI	CCTC	8 cut(s)	126, 214, 286, 334, 396, 431, 984, 1117
Mph1103I	ATGCAT	2 cut(s)	163, 1194
MroI	TCCGGA	1 cut(s)	562
MroXI	GAANNNNTTC	2 cut(s)	467, 1010
MseI	TTAA	3 cut(s)	63, 186, 804
MspI	CCGG	2 cut(s)	563, 1025
MspR9I	CCNGG	1 cut(s)	449
MunI	CAATTG	1 cut(s)	673
MvaI	CCWGG	1 cut(s)	449
MwoI	GCNNNNNNNGC	1 cut(s)	719
NdeII	GATC	8 cut(s)	265, 372, 382, 552, 649, 757, 787, 892
NheI	GCTAGC	1 cut(s)	856
NlaIII	CATG	3 cut(s)	307, 1170, 1196
NlaIV	GGNNCC	1 cut(s)	511
NmuCI	GTSAC	2 cut(s)	521, 920
NsiI	ATGCAT	2 cut(s)	163, 1194
NspI	RCATGY	2 cut(s)	1170, 1196
PdmI	GAANNNNTTC	2 cut(s)	467, 1010
PfeI	GAWTC	2 cut(s)	949, 1011
PkrI	GCNGC	2 cut(s)	479, 660
PleI	GAGTC	1 cut(s)	349
PpsI	GAGTC	1 cut(s)	349
Ppu21I	YACGTR	1 cut(s)	427
Psp1406I	AACGTT	1 cut(s)	128
Psp6I	CCWGG	1 cut(s)	447
PspFI	CCCAGC	1 cut(s)	846
PspGI	CCWGG	1 cut(s)	447
PspN4I	GGNNCC	1 cut(s)	511
PspPI	GGNCC	1 cut(s)	113
PstNI	CAGNNNCTG	1 cut(s)	437
PsuI	RGATCY	1 cut(s)	892
RsaI	GTAC	3 cut(s)	144, 486, 542
RsaNI	GTAC	3 cut(s)	143, 485, 541
SaqAI	TTAA	3 cut(s)	63, 186, 804
SatI	GCNGC	2 cut(s)	478, 659
Sau3AI	GATC	8 cut(s)	265, 372, 382, 552, 649, 757, 787, 892
Sau96I	GGNCC	1 cut(s)	113
SchI	GAGTC	1 cut(s)	349
ScrFI	CCNGG	1 cut(s)	449
SduI	GDGCHC	1 cut(s)	880
SfaNI	GCATC	5 cut(s)	148, 170, 327, 616, 1179
SfcI	CTRYAG	3 cut(s)	501, 621, 1092
SinI	GGWCC	1 cut(s)	113
SmlI	CTYRAG	3 cut(s)	338, 413, 653
SmoI	CTYRAG	3 cut(s)	338, 413, 653
Sse9I	AATT	5 cut(s)	92, 176, 673, 851, 929
SsiI	CCGC	1 cut(s)	658
SspI	AATATT	1 cut(s)	718
SspMI	CTAG	4 cut(s)	71, 704, 857, 882
StyD4I	CCNGG	1 cut(s)	447
TaaI	ACNGT	3 cut(s)	527, 545, 875
TaiI	ACGT	2 cut(s)	131, 429
TaqI	TCGA	3 cut(s)	612, 888, 1176
TasI	AATT	5 cut(s)	92, 176, 673, 851, 929
TatI	WGTACW	3 cut(s)	142, 484, 540
TauI	GCSGC	1 cut(s)	661
TfiI	GAWTC	2 cut(s)	949, 1011
Tru1I	TTAA	3 cut(s)	63, 186, 804
Tru9I	TTAA	3 cut(s)	63, 186, 804
TscAI	CASTG	3 cut(s)	241, 880, 950
TseFI	GTSAC	2 cut(s)	521, 920
TseI	GCWGC	1 cut(s)	477
Tsp45I	GTSAC	2 cut(s)	521, 920
TspDTI	ATGAA	2 cut(s)	292, 1091
TspGWI	ACGGA	2 cut(s)	170, 1151
TspRI	CASTG	3 cut(s)	241, 880, 950
VneI	GTGCAC	1 cut(s)	876
VpaK11BI	GGWCC	1 cut(s)	113
XagI	CCTNNNNNAGG	1 cut(s)	393
XapI	RAATTY	3 cut(s)	92, 176, 929
XbaI	TCTAGA	1 cut(s)	70
XceI	RCATGY	2 cut(s)	1170, 1196
XmnI	GAANNNNTTC	2 cut(s)	467, 1010
XspI	CTAG	4 cut(s)	71, 704, 857, 882
Zsp2I	ATGCAT	2 cut(s)	163, 1194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.