Rmu_sc0005082.1_g000003

Cell division control protein 24, OB domain 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005082.1
OG0017434
Physical Location & Seq
Forward (+)
3185 .. 3620
436 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005082.1_g000003.1.cds

Sequence Viewer

Length: 345 bp
atggggtggagatcgcccgacccagctggaattggatcgcctcttggattctcaagacctgcagcgcctactcaagcggcgttacgacgacgattttgctctatgatctcttacaggtatgagtttttagccgaattaggttatggctttcgggataggccagtgaagaaaatgccagaatgcaagaagcaattgcgaaagaagaataagcgaaggaagcattcgaacactttgaccattgattccatttacgagaagaatttcttgtccttgaatagtgtgttggaagcagtgattgtcaacgtttttgttctccctggtaatctggtgactgaagaactatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CDC24_OB1 CDC24_OB2 CDC24_OB3

Protein Analysis

114

Amino Acids

13.02

Weight (kDa)

10.07

Isoelectric Point (pI)

67.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 67
AciI CCGC 1 cut(s) 77
AclI AACGTT 1 cut(s) 303
AclWI GGATC 1 cut(s) 43
AcsI RAATTY 1 cut(s) 259
AgsI TTSAA 1 cut(s) 274
AjnI CCWGG 1 cut(s) 316
AjuI GAANNNNNNNTTGG 2 cut(s) 266, 298
AluBI AGCT 1 cut(s) 26
AluI AGCT 1 cut(s) 26
AlwI GGATC 1 cut(s) 43
AoxI GGCC 1 cut(s) 158
ApeKI GCWGC 1 cut(s) 62
ApoI RAATTY 1 cut(s) 259
ArsI GACNNNNNNTTYG 2 cut(s) 78, 110
Asp700I GAANNNNTTC 1 cut(s) 260
AspLEI GCGC 1 cut(s) 67
AsuHPI GGTGA 1 cut(s) 340
AsuII TTCGAA 1 cut(s) 224
BbvI GCAGC 1 cut(s) 74
BcgI CGANNNNNNTGC 2 cut(s) 78, 112
BciT130I CCWGG 1 cut(s) 318
BfmI CTRYAG 2 cut(s) 60, 341
BfoI RGCGCY 1 cut(s) 68
BfuAI ACCTGC 1 cut(s) 67
BisI GCNGC 2 cut(s) 63, 78
BlsI GCNGC 2 cut(s) 64, 79
Bme1390I CCNGG 1 cut(s) 318
BmrFI CCNGG 1 cut(s) 318
Bpu14I TTCGAA 1 cut(s) 224
BpuEI CTTGAG 2 cut(s) 37, 57
BsaJI CCNNGG 1 cut(s) 316
Bse1I ACTGG 1 cut(s) 161
BseBI CCWGG 1 cut(s) 318
BseDI CCNNGG 1 cut(s) 316
BseNI ACTGG 1 cut(s) 161
BseXI GCAGC 1 cut(s) 74
BseYI CCCAGC 1 cut(s) 22
BshFI GGCC 1 cut(s) 160
BsmI GAATGC 2 cut(s) 185, 220
BsnI GGCC 1 cut(s) 160
Bsp119I TTCGAA 1 cut(s) 224
Bsp143I GATC 3 cut(s) 11, 35, 105
BspACI CCGC 1 cut(s) 77
BspANI GGCC 1 cut(s) 160
BspMAI CTGCAG 1 cut(s) 64
BspMI ACCTGC 1 cut(s) 67
BspPI GGATC 1 cut(s) 43
BspT104I TTCGAA 1 cut(s) 224
BsrI ACTGG 1 cut(s) 161
BssECI CCNNGG 1 cut(s) 316
BssMI GATC 3 cut(s) 11, 35, 105
Bst2UI CCWGG 1 cut(s) 318
BstBI TTCGAA 1 cut(s) 224
BstH2I RGCGCY 1 cut(s) 68
BstHHI GCGC 1 cut(s) 67
BstKTI GATC 3 cut(s) 14, 38, 108
BstMBI GATC 3 cut(s) 11, 35, 105
BstMWI GCNNNNNNNGC 1 cut(s) 217
BstNI CCWGG 1 cut(s) 318
BstSCI CCNGG 1 cut(s) 316
BstSFI CTRYAG 2 cut(s) 60, 341
BstV1I GCAGC 1 cut(s) 74
BsuRI GGCC 1 cut(s) 160
BtsI GCAGTG 1 cut(s) 297
BtsIMutI CAGTG 2 cut(s) 168, 297
BveI ACCTGC 1 cut(s) 67
CfoI GCGC 1 cut(s) 67
CviJI RGCY 4 cut(s) 26, 131, 147, 160
CviKI_1 RGCY 4 cut(s) 26, 131, 147, 160
DpnI GATC 3 cut(s) 13, 37, 107
DpnII GATC 3 cut(s) 11, 35, 105
EcoRII CCWGG 1 cut(s) 316
FaiI YATR 4 cut(s) 104, 120, 144, 343
FalI AAGNNNNNCTT 2 cut(s) 248, 280
Fnu4HI GCNGC 2 cut(s) 63, 78
Fsp4HI GCNGC 2 cut(s) 63, 78
GlaI GCGC 1 cut(s) 66
GluI GCNGC 2 cut(s) 63, 78
GsaI CCCAGC 1 cut(s) 26
HaeII RGCGCY 1 cut(s) 68
HaeIII GGCC 1 cut(s) 160
HhaI GCGC 1 cut(s) 67
Hin6I GCGC 1 cut(s) 65
HinP1I GCGC 1 cut(s) 65
HincII GTYRAC 1 cut(s) 301
HindII GTYRAC 1 cut(s) 301
HinfI GANTC 2 cut(s) 48, 242
HphI GGTGA 1 cut(s) 340
Hpy166II GTNNAC 1 cut(s) 301
Hpy188III TCNNGA 2 cut(s) 54, 152
Hpy8I GTNNAC 1 cut(s) 301
Hpy99I CGWCG 2 cut(s) 90, 93
HpyAV CCTTC 1 cut(s) 207
HpyCH4IV ACGT 1 cut(s) 303
HpyCH4V TGCA 2 cut(s) 62, 183
HpyF10VI GCNNNNNNNGC 1 cut(s) 217
HpySE526I ACGT 1 cut(s) 303
HspAI GCGC 1 cut(s) 65
Kzo9I GATC 3 cut(s) 11, 35, 105
LpnPI CCDG 9 cut(s) 12, 36, 72, 100, 174, 189, 303, 311, 330
Lsp1109I GCAGC 1 cut(s) 74
MaeII ACGT 1 cut(s) 303
MaeIII GTNAC 2 cut(s) 81, 328
MalI GATC 3 cut(s) 13, 37, 107
MboI GATC 3 cut(s) 11, 35, 105
MboII GAAGA 3 cut(s) 178, 214, 268
MfeI CAATTG 1 cut(s) 191
MluCI AATT 4 cut(s) 30, 134, 191, 259
MmeI TCCRAC 1 cut(s) 264
MnlI CCTC 1 cut(s) 51
MroXI GAANNNNTTC 1 cut(s) 260
MspA1I CMGCKG 1 cut(s) 26
MspR9I CCNGG 1 cut(s) 318
MunI CAATTG 1 cut(s) 191
Mva1269I GAATGC 2 cut(s) 185, 220
MvaI CCWGG 1 cut(s) 318
MwoI GCNNNNNNNGC 1 cut(s) 217
NdeII GATC 3 cut(s) 11, 35, 105
NmuCI GTSAC 1 cut(s) 328
NspV TTCGAA 1 cut(s) 224
PctI GAATGC 2 cut(s) 185, 220
PdmI GAANNNNTTC 1 cut(s) 260
PfeI GAWTC 2 cut(s) 48, 242
PkrI GCNGC 2 cut(s) 64, 79
Psp1406I AACGTT 1 cut(s) 303
Psp6I CCWGG 1 cut(s) 316
PspFI CCCAGC 1 cut(s) 22
PspGI CCWGG 1 cut(s) 316
PstI CTGCAG 1 cut(s) 64
PvuII CAGCTG 1 cut(s) 26
SatI GCNGC 2 cut(s) 63, 78
Sau3AI GATC 3 cut(s) 11, 35, 105
ScrFI CCNGG 1 cut(s) 318
SetI ASST 5 cut(s) 28, 61, 119, 142, 306
SfcI CTRYAG 2 cut(s) 60, 341
SfuI TTCGAA 1 cut(s) 224
SmlI CTYRAG 2 cut(s) 52, 72
SmoI CTYRAG 2 cut(s) 52, 72
Sse9I AATT 4 cut(s) 30, 134, 191, 259
SsiI CCGC 1 cut(s) 77
StyD4I CCNGG 1 cut(s) 316
TaiI ACGT 1 cut(s) 306
TaqI TCGA 1 cut(s) 224
TasI AATT 4 cut(s) 30, 134, 191, 259
TauI GCSGC 1 cut(s) 80
TfiI GAWTC 2 cut(s) 48, 242
TscAI CASTG 2 cut(s) 168, 297
TseFI GTSAC 1 cut(s) 328
TseI GCWGC 1 cut(s) 62
Tsp45I GTSAC 1 cut(s) 328
TspRI CASTG 2 cut(s) 168, 297
XapI RAATTY 1 cut(s) 259
XmnI GAANNNNTTC 1 cut(s) 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.