Rorug02G0025900

Cell division control protein 24, OB domain 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0017434
Physical Location & Seq
Reverse (-)
2014541 .. 2015862
1322 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0025900.1

Sequence Viewer

Length: 669 bp
ATGGTGTTCACCACCTTATTGTTGCTGGTAGTTCTATTTCTTGCTGCCTTCTTTATATATTTCCCCAACCGCAAGCTTCTTGCATGGTTTCAGTCTTTCTTTCCAGTCGAAACGGCTTCTGATTCGACTGCAACGAAGAAAGAAGTCGCGAAGAATGTTAGGTCAGTGATAACAACAAGAAGGGAGGAGGATCCAGAGCTGAAGCGAGTGTTTGCCACCTTTGACAAGAACAGTGATGGGTTTATAACCAAGCAGGAGCTGAAGGAGTCGCTGAAGAATATCAGGGTCTTCATGAGTGATGAGGAAGTCGAAGAAATGGTGAACAAAGTGGACGCAAACGGAGACGGGCTGATCGACTTTTCCGAGTTCTGTTTGCTCTGCCAGGGTCAGTCTATTGTTAATGGAGGAGAAGATGGGAATGAAGCTGGTGAGGTGGACCAAGAGGAGGAACTGAGGGAGGCTTTTGGTGTGTTCGACAAGGATAAAGATGGGTTGATTTCTGTGGAGGAATTGGGGGTGGTTTTGTGCTCTTTGGGTTTGAGAGAAGGGAATAGAGTTGAGGCTTGTAAGGAAATGGTGAAGAAGGTTGATAAGGATGGAGATGGTATGGTTAATTTTGATGAGTTCAAGATGATGATGAAAGGTGGGAGGCTTCTCACAGCTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CDC24_OB1 CDC24_OB2 CDC24_OB3

Protein Analysis

222

Amino Acids

25.01

Weight (kDa)

4.61

Isoelectric Point (pI)

41.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EF-hand_1 PF00036 66 - 93 4.4e-07 EF hand domain
EF-hand_7 PF13499 66 - 127 2.9e-16 EF-hand domain pair
EF-hand_6 PF13405 66 - 93 1.8e-06 EF-hand domain
EF-hand_8 PF13833 78 - 125 1.3e-06 EF-hand domain pair
EF-hand_1 PF00036 102 - 128 1.8e-06 EF hand domain
EF-hand_7 PF13499 148 - 214 1.6e-13 EF-hand domain pair
EF-hand_1 PF00036 150 - 175 1.6e-06 EF hand domain
EF-hand_6 PF13405 150 - 179 4.2e-07 EF-hand domain
EF-hand_1 PF00036 189 - 214 6.9e-08 EF hand domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 245
AccII CGCG 1 cut(s) 149
AciI CCGC 1 cut(s) 70
AclWI GGATC 2 cut(s) 185, 198
AcuI CTGAAG 3 cut(s) 221, 281, 293
AfiI CCNNNNNNNGG 1 cut(s) 445
AgsI TTSAA 1 cut(s) 628
AjnI CCWGG 1 cut(s) 381
AluBI AGCT 5 cut(s) 76, 199, 259, 425, 662
AluI AGCT 5 cut(s) 76, 199, 259, 425, 662
Alw21I GWGCWC 1 cut(s) 530
Alw26I GTCTC 1 cut(s) 336
AlwI GGATC 2 cut(s) 185, 198
AlwNI CAGNNNCTG 1 cut(s) 259
ApeKI GCWGC 1 cut(s) 44
AspS9I GGNCC 1 cut(s) 436
AsuHPI GGTGA 3 cut(s) 331, 440, 589
AvaII GGWCC 1 cut(s) 436
BamHI GGATCC 1 cut(s) 190
BbsI GAAGAC 1 cut(s) 280
Bbv12I GWGCWC 1 cut(s) 530
BbvI GCAGC 1 cut(s) 31
BccI CCATC 5 cut(s) 230, 407, 482, 590, 596
BceAI ACGGC 1 cut(s) 129
BciT130I CCWGG 1 cut(s) 383
BcoDI GTCTC 1 cut(s) 336
BisI GCNGC 1 cut(s) 45
BlsI GCNGC 1 cut(s) 46
Bme1390I CCNGG 1 cut(s) 383
Bme18I GGWCC 1 cut(s) 436
BmgT120I GGNCC 1 cut(s) 436
BmiI GGNNCC 1 cut(s) 192
BmrFI CCNGG 1 cut(s) 383
BpiI GAAGAC 1 cut(s) 280
BsaJI CCNNGG 1 cut(s) 382
Bsc4I CCNNNNNNNGG 1 cut(s) 445
Bse1I ACTGG 1 cut(s) 104
BseBI CCWGG 1 cut(s) 383
BseDI CCNNGG 1 cut(s) 382
BseGI GGATG 1 cut(s) 601
BseLI CCNNNNNNNGG 1 cut(s) 445
BseMII CTCAG 1 cut(s) 443
BseNI ACTGG 1 cut(s) 104
BseRI GAGGAG 3 cut(s) 200, 420, 458
BseXI GCAGC 1 cut(s) 31
Bsh1236I CGCG 1 cut(s) 149
BsiHKAI GWGCWC 1 cut(s) 530
BslI CCNNNNNNNGG 1 cut(s) 445
BsmAI GTCTC 1 cut(s) 336
BsmBI CGTCTC 1 cut(s) 336
Bsp1286I GDGCHC 1 cut(s) 530
Bsp143I GATC 2 cut(s) 190, 351
Bsp68I TCGCGA 1 cut(s) 149
BspACI CCGC 1 cut(s) 70
BspCNI CTCAG 1 cut(s) 444
BspFNI CGCG 1 cut(s) 149
BspHI TCATGA 1 cut(s) 291
BspLI GGNNCC 1 cut(s) 192
BspPI GGATC 2 cut(s) 185, 198
BsrI ACTGG 1 cut(s) 104
BssECI CCNNGG 1 cut(s) 382
BssMI GATC 2 cut(s) 190, 351
Bst2UI CCWGG 1 cut(s) 383
Bst4CI ACNGT 1 cut(s) 233
BstC8I GCNNGC 1 cut(s) 74
BstDEI CTNAG 1 cut(s) 452
BstF5I GGATG 1 cut(s) 601
BstFNI CGCG 1 cut(s) 149
BstKTI GATC 2 cut(s) 193, 354
BstMAI GTCTC 1 cut(s) 336
BstMBI GATC 2 cut(s) 190, 351
BstNI CCWGG 1 cut(s) 383
BstSCI CCNGG 1 cut(s) 381
BstUI CGCG 1 cut(s) 149
BstV1I GCAGC 1 cut(s) 31
BstV2I GAAGAC 1 cut(s) 280
BstX2I RGATCY 1 cut(s) 190
BstYI RGATCY 1 cut(s) 190
BtsCI GGATG 1 cut(s) 601
BtsIMutI CAGTG 2 cut(s) 171, 238
BtuMI TCGCGA 1 cut(s) 149
Cac8I GCNNGC 1 cut(s) 74
CaiI CAGNNNCTG 1 cut(s) 259
CciI TCATGA 1 cut(s) 291
Cfr13I GGNCC 1 cut(s) 436
CseI GACGC 1 cut(s) 341
CviAII CATG 2 cut(s) 84, 292
DdeI CTNAG 1 cut(s) 452
DpnI GATC 2 cut(s) 192, 353
DpnII GATC 2 cut(s) 190, 351
Eco47I GGWCC 1 cut(s) 436
Eco57I CTGAAG 3 cut(s) 221, 281, 293
EcoRII CCWGG 1 cut(s) 381
Esp3I CGTCTC 1 cut(s) 336
FaeI CATG 2 cut(s) 87, 295
FaiI YATR 6 cut(s) 56, 58, 85, 245, 293, 608
FatI CATG 2 cut(s) 83, 291
Fnu4HI GCNGC 1 cut(s) 45
FokI GGATG 1 cut(s) 608
Fsp4HI GCNGC 1 cut(s) 45
GluI GCNGC 1 cut(s) 45
HgaI GACGC 1 cut(s) 341
Hin1II CATG 2 cut(s) 87, 295
HindIII AAGCTT 1 cut(s) 74
HinfI GANTC 2 cut(s) 122, 266
HphI GGTGA 3 cut(s) 331, 440, 589
Hpy166II GTNNAC 4 cut(s) 9, 322, 331, 436
Hpy188I TCNGA 2 cut(s) 121, 364
Hpy188III TCNNGA 4 cut(s) 148, 194, 292, 628
Hpy8I GTNNAC 4 cut(s) 9, 322, 331, 436
HpyAV CCTTC 5 cut(s) 58, 174, 256, 539, 577
HpyCH4III ACNGT 1 cut(s) 233
HpyCH4V TGCA 2 cut(s) 83, 131
HpyF3I CTNAG 1 cut(s) 452
Hsp92II CATG 2 cut(s) 87, 295
Kzo9I GATC 2 cut(s) 190, 351
LmnI GCTCC 1 cut(s) 256
LpnPI CCDG 8 cut(s) 11, 117, 207, 239, 268, 368, 395, 411
Lsp1109I GCAGC 1 cut(s) 31
MalI GATC 2 cut(s) 192, 353
MboI GATC 2 cut(s) 190, 351
MboII GAAGA 7 cut(s) 148, 163, 280, 286, 323, 422, 592
MflI RGATCY 1 cut(s) 190
MhlI GDGCHC 1 cut(s) 530
MluCI AATT 2 cut(s) 509, 613
MlyI GAGTC 1 cut(s) 275
MseI TTAA 2 cut(s) 399, 612
MspR9I CCNGG 1 cut(s) 383
MvaI CCWGG 1 cut(s) 383
MvnI CGCG 1 cut(s) 149
NdeII GATC 2 cut(s) 190, 351
NlaIII CATG 2 cut(s) 87, 295
NlaIV GGNNCC 1 cut(s) 192
NruI TCGCGA 1 cut(s) 149
PagI TCATGA 1 cut(s) 291
PcsI WCGNNNNNNNCGW 3 cut(s) 131, 351, 360
PfeI GAWTC 1 cut(s) 122
PkrI GCNGC 1 cut(s) 46
PleI GAGTC 1 cut(s) 274
PpsI GAGTC 1 cut(s) 274
PsiI TTATAA 1 cut(s) 245
Psp6I CCWGG 1 cut(s) 381
PspGI CCWGG 1 cut(s) 381
PspN4I GGNNCC 1 cut(s) 192
PspPI GGNCC 1 cut(s) 436
PstNI CAGNNNCTG 1 cut(s) 259
PsuI RGATCY 1 cut(s) 190
RruI TCGCGA 1 cut(s) 149
SaqAI TTAA 2 cut(s) 399, 612
SatI GCNGC 1 cut(s) 45
Sau3AI GATC 2 cut(s) 190, 351
Sau96I GGNCC 1 cut(s) 436
SchI GAGTC 1 cut(s) 275
ScrFI CCNGG 1 cut(s) 383
SduI GDGCHC 1 cut(s) 530
SinI GGWCC 1 cut(s) 436
Sse9I AATT 2 cut(s) 509, 613
SsiI CCGC 1 cut(s) 70
StyD4I CCNGG 1 cut(s) 381
TaaI ACNGT 1 cut(s) 233
TaqI TCGA 5 cut(s) 108, 125, 309, 354, 474
TasI AATT 2 cut(s) 509, 613
TfiI GAWTC 1 cut(s) 122
Tru1I TTAA 2 cut(s) 399, 612
Tru9I TTAA 2 cut(s) 399, 612
TscAI CASTG 2 cut(s) 171, 238
TseI GCWGC 1 cut(s) 44
TspDTI ATGAA 3 cut(s) 280, 435, 653
TspGWI ACGGA 1 cut(s) 354
TspRI CASTG 2 cut(s) 171, 238
VpaK11BI GGWCC 1 cut(s) 436
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.