Rh2BG071900

Cell division control protein 24, OB domain 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0017434
Physical Location & Seq
Forward (+)
5423894 .. 5424229
336 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG071900.1

Sequence Viewer

Length: 336 bp
ATGACGGTGGACCACCGGTGTCTGGTTCCTTTTCTCGTCAGGGTTACTATGAACTCCGTGGAAATGAACTCAGTCGACTCGTCGGACTGCAATCCGCAGCCACAAGAAGAAGACCCCCTCCTCAAATTCATCGATTACGCTAGGTCCGCTCTCTCGCCTGAAACACACGAAGATTCGGATCCGAAAGGAAATGGGGTGGAGACCGCCCGGCCTAGTTGGAATTGGATCTCCTCTAGGATTCTCAAGACCTGCAGTGCCTACTCCAGCGGTGTTACGGCGGTGATTTTGCTCTCCGATCTCTCACAGGTATGGGTTTTTAGCCGAATTAGGTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CDC24_OB1 CDC24_OB2 CDC24_OB3

Protein Analysis

111

Amino Acids

12.48

Weight (kDa)

4.99

Isoelectric Point (pI)

50.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CDC24_OB1 PF17246 41 - 104 5.9e-21 Cell division control protein 24, OB domain 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 257
AccBSI CCGCTC 1 cut(s) 149
AccI GTMKAC 1 cut(s) 75
AciI CCGC 5 cut(s) 95, 147, 204, 267, 278
AclWI GGATC 3 cut(s) 173, 186, 233
AcsI RAATTY 1 cut(s) 125
AfiI CCNNNNNNNGG 1 cut(s) 22
AgeI ACCGGT 1 cut(s) 15
Alw26I GTCTC 1 cut(s) 194
AlwI GGATC 3 cut(s) 173, 186, 233
AoxI GGCC 1 cut(s) 209
ApeKI GCWGC 1 cut(s) 97
ApoI RAATTY 1 cut(s) 125
AsiGI ACCGGT 1 cut(s) 15
AspS9I GGNCC 2 cut(s) 10, 144
AsuC2I CCSGG 1 cut(s) 208
AsuHPI GGTGA 1 cut(s) 292
AvaII GGWCC 2 cut(s) 10, 144
BamHI GGATCC 1 cut(s) 178
BbsI GAAGAC 1 cut(s) 117
BbvI GCAGC 1 cut(s) 109
BceAI ACGGC 1 cut(s) 291
BcnI CCSGG 1 cut(s) 208
BcoDI GTCTC 1 cut(s) 194
BfaI CTAG 4 cut(s) 141, 213, 234, 334
BfmI CTRYAG 1 cut(s) 250
BfuAI ACCTGC 1 cut(s) 257
BisI GCNGC 1 cut(s) 98
BlsI GCNGC 1 cut(s) 99
Bme1390I CCNGG 1 cut(s) 208
Bme18I GGWCC 2 cut(s) 10, 144
BmgT120I GGNCC 2 cut(s) 10, 144
BmiI GGNNCC 2 cut(s) 27, 180
BmrFI CCNGG 1 cut(s) 208
BpiI GAAGAC 1 cut(s) 117
BpmI CTGGAG 1 cut(s) 247
BpuEI CTTGAG 1 cut(s) 227
BpuMI CCSGG 1 cut(s) 208
Bsa29I ATCGAT 1 cut(s) 132
BsaBI GATNNNNATC 1 cut(s) 177
BsaI GGTCTC 1 cut(s) 194
BsaJI CCNNGG 1 cut(s) 57
BsaWI WCCGGW 1 cut(s) 15
Bsc4I CCNNNNNNNGG 1 cut(s) 22
Bse118I RCCGGY 1 cut(s) 15
Bse8I GATNNNNATC 1 cut(s) 177
BseCI ATCGAT 1 cut(s) 132
BseDI CCNNGG 1 cut(s) 57
BseJI GATNNNNATC 1 cut(s) 177
BseLI CCNNNNNNNGG 1 cut(s) 22
BseMII CTCAG 1 cut(s) 84
BseRI GAGGAG 2 cut(s) 110, 220
BseXI GCAGC 1 cut(s) 109
BshFI GGCC 1 cut(s) 211
BshTI ACCGGT 1 cut(s) 15
BshVI ATCGAT 1 cut(s) 132
BsiSI CCGG 2 cut(s) 16, 208
BslI CCNNNNNNNGG 1 cut(s) 22
BsmAI GTCTC 1 cut(s) 194
BsnI GGCC 1 cut(s) 211
Bso31I GGTCTC 1 cut(s) 194
Bsp143I GATC 3 cut(s) 178, 225, 295
BspACI CCGC 5 cut(s) 95, 147, 204, 267, 278
BspANI GGCC 1 cut(s) 211
BspCNI CTCAG 1 cut(s) 83
BspDI ATCGAT 1 cut(s) 132
BspLI GGNNCC 2 cut(s) 27, 180
BspMAI CTGCAG 1 cut(s) 254
BspMI ACCTGC 1 cut(s) 257
BspPI GGATC 3 cut(s) 173, 186, 233
BspTNI GGTCTC 1 cut(s) 194
BsrBI CCGCTC 1 cut(s) 149
BsrFI RCCGGY 1 cut(s) 15
BssAI RCCGGY 1 cut(s) 15
BssECI CCNNGG 1 cut(s) 57
BssMI GATC 3 cut(s) 178, 225, 295
Bst4CI ACNGT 1 cut(s) 7
BstDEI CTNAG 1 cut(s) 70
BstDSI CCRYGG 1 cut(s) 57
BstKTI GATC 3 cut(s) 181, 228, 298
BstMAI GTCTC 1 cut(s) 194
BstMBI GATC 3 cut(s) 178, 225, 295
BstMWI GCNNNNNNNGC 1 cut(s) 146
BstSCI CCNGG 1 cut(s) 206
BstSFI CTRYAG 1 cut(s) 250
BstV1I GCAGC 1 cut(s) 109
BstV2I GAAGAC 1 cut(s) 117
BstX2I RGATCY 2 cut(s) 178, 225
BstYI RGATCY 2 cut(s) 178, 225
Bsu15I ATCGAT 1 cut(s) 132
BsuRI GGCC 1 cut(s) 211
BsuTUI ATCGAT 1 cut(s) 132
BtgI CCRYGG 1 cut(s) 57
BtsI GCAGTG 1 cut(s) 259
BtsIMutI CAGTG 1 cut(s) 259
BveI ACCTGC 1 cut(s) 257
Cfr10I RCCGGY 1 cut(s) 15
Cfr13I GGNCC 2 cut(s) 10, 144
ClaI ATCGAT 1 cut(s) 132
CspAI ACCGGT 1 cut(s) 15
CviJI RGCY 3 cut(s) 100, 211, 321
CviKI_1 RGCY 3 cut(s) 100, 211, 321
DdeI CTNAG 1 cut(s) 70
DpnI GATC 3 cut(s) 180, 227, 297
DpnII GATC 3 cut(s) 178, 225, 295
Eco31I GGTCTC 1 cut(s) 194
Eco47I GGWCC 2 cut(s) 10, 144
FaiI YATR 2 cut(s) 50, 310
FblI GTMKAC 1 cut(s) 75
Fnu4HI GCNGC 1 cut(s) 98
Fsp4HI GCNGC 1 cut(s) 98
FspBI CTAG 4 cut(s) 141, 213, 234, 334
GluI GCNGC 1 cut(s) 98
GsuI CTGGAG 1 cut(s) 247
HaeIII GGCC 1 cut(s) 211
HapII CCGG 2 cut(s) 16, 208
HincII GTYRAC 1 cut(s) 76
HindII GTYRAC 1 cut(s) 76
HinfI GANTC 3 cut(s) 77, 173, 238
HpaII CCGG 2 cut(s) 16, 208
HphI GGTGA 1 cut(s) 292
Hpy166II GTNNAC 2 cut(s) 10, 76
Hpy188I TCNGA 4 cut(s) 85, 178, 183, 295
Hpy188III TCNNGA 1 cut(s) 244
Hpy8I GTNNAC 2 cut(s) 10, 76
Hpy99I CGWCG 1 cut(s) 85
HpyCH4III ACNGT 1 cut(s) 7
HpyCH4V TGCA 2 cut(s) 90, 252
HpyF10VI GCNNNNNNNGC 1 cut(s) 146
HpyF3I CTNAG 1 cut(s) 70
Kzo9I GATC 3 cut(s) 178, 225, 295
LpnPI CCDG 8 cut(s) 8, 25, 29, 171, 221, 262, 277, 290
Lsp1109I GCAGC 1 cut(s) 109
MaeI CTAG 4 cut(s) 141, 213, 234, 334
MaeIII GTNAC 2 cut(s) 43, 271
MalI GATC 3 cut(s) 180, 227, 297
MbiI CCGCTC 1 cut(s) 149
MboI GATC 3 cut(s) 178, 225, 295
MboII GAAGA 3 cut(s) 119, 122, 182
MflI RGATCY 2 cut(s) 178, 225
MluCI AATT 3 cut(s) 125, 220, 324
MlyI GAGTC 1 cut(s) 71
MmeI TCCRAC 2 cut(s) 63, 197
MnlI CCTC 3 cut(s) 128, 131, 241
MslI CAYNNNNRTG 1 cut(s) 307
MspA1I CMGCKG 1 cut(s) 267
MspI CCGG 2 cut(s) 16, 208
MspR9I CCNGG 1 cut(s) 208
MwoI GCNNNNNNNGC 1 cut(s) 146
NciI CCSGG 1 cut(s) 208
NdeII GATC 3 cut(s) 178, 225, 295
NlaIV GGNNCC 2 cut(s) 27, 180
PfeI GAWTC 2 cut(s) 173, 238
PinAI ACCGGT 1 cut(s) 15
PkrI GCNGC 1 cut(s) 99
PleI GAGTC 1 cut(s) 71
PpsI GAGTC 1 cut(s) 71
PspN4I GGNNCC 2 cut(s) 27, 180
PspPI GGNCC 2 cut(s) 10, 144
PstI CTGCAG 1 cut(s) 254
PsuI RGATCY 2 cut(s) 178, 225
RseI CAYNNNNRTG 1 cut(s) 307
SalI GTCGAC 1 cut(s) 74
SatI GCNGC 1 cut(s) 98
Sau3AI GATC 3 cut(s) 178, 225, 295
Sau96I GGNCC 2 cut(s) 10, 144
SchI GAGTC 1 cut(s) 71
ScrFI CCNGG 1 cut(s) 208
SetI ASST 4 cut(s) 146, 251, 309, 332
SfcI CTRYAG 1 cut(s) 250
SgrAI CRCCGGYG 1 cut(s) 15
SinI GGWCC 2 cut(s) 10, 144
SmiMI CAYNNNNRTG 1 cut(s) 307
SmlI CTYRAG 1 cut(s) 242
SmoI CTYRAG 1 cut(s) 242
Sse9I AATT 3 cut(s) 125, 220, 324
SsiI CCGC 5 cut(s) 95, 147, 204, 267, 278
SspMI CTAG 4 cut(s) 141, 213, 234, 334
StyD4I CCNGG 1 cut(s) 206
TaaI ACNGT 1 cut(s) 7
TaqI TCGA 2 cut(s) 75, 132
TasI AATT 3 cut(s) 125, 220, 324
TfiI GAWTC 2 cut(s) 173, 238
TscAI CASTG 1 cut(s) 259
TseI GCWGC 1 cut(s) 97
TspDTI ATGAA 3 cut(s) 65, 80, 118
TspGWI ACGGA 1 cut(s) 46
TspRI CASTG 1 cut(s) 259
VpaK11BI GGWCC 2 cut(s) 10, 144
XapI RAATTY 1 cut(s) 125
XmiI GTMKAC 1 cut(s) 75
XspI CTAG 4 cut(s) 141, 213, 234, 334
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.