Rh2CG073300

Cell division control protein 24, OB domain 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0017434
Physical Location & Seq
Forward (+)
5988612 .. 5989102
491 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG073300.1

Sequence Viewer

Length: 363 bp
ATGACGGTGGACCACCGGTGTCTGGTTCCTTTTCTCGTCAGGGTTACTATGAACTCCGTGGAAATGAACTCAGTCGACTCGTCGGACTGCAATCCGCAGCCACAAGAAGAAGACCCCCTCCTCAAATTCATCGATTACGCTAGGTCCGCTCTCTCGCCTGAAACACACGAAGATTCGGATCCGAAAGGAAATGGGGTGGAGACCGCCCGGCCTAGTTGGAATTGGATCTCCTCTAGGATTCTCAAGACCTGCAGTGCCTACTCCAGCGGTGTTACGGCGGTGATTTTGCTCTCCGATCTCTCACAGGGACAGGCCTGTGAAGAAAATGCCAGAATGCGTGAAGCAATTGCGAAAGAAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CDC24_OB1 CDC24_OB2 CDC24_OB3

Protein Analysis

120

Amino Acids

13.3

Weight (kDa)

4.83

Isoelectric Point (pI)

52.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CDC24_OB1 PF17246 41 - 111 9.8e-21 Cell division control protein 24, OB domain 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 257
AccBSI CCGCTC 1 cut(s) 149
AccI GTMKAC 1 cut(s) 75
AciI CCGC 5 cut(s) 95, 147, 204, 267, 278
AclWI GGATC 3 cut(s) 173, 186, 233
AcsI RAATTY 1 cut(s) 125
AfiI CCNNNNNNNGG 1 cut(s) 22
AgeI ACCGGT 1 cut(s) 15
Alw26I GTCTC 1 cut(s) 194
AlwI GGATC 3 cut(s) 173, 186, 233
AoxI GGCC 2 cut(s) 209, 312
ApeKI GCWGC 1 cut(s) 97
ApoI RAATTY 1 cut(s) 125
AsiGI ACCGGT 1 cut(s) 15
AspS9I GGNCC 2 cut(s) 10, 144
AsuC2I CCSGG 1 cut(s) 208
AsuHPI GGTGA 1 cut(s) 292
AvaII GGWCC 2 cut(s) 10, 144
BamHI GGATCC 1 cut(s) 178
BbsI GAAGAC 1 cut(s) 117
BbvI GCAGC 1 cut(s) 109
BceAI ACGGC 1 cut(s) 291
BcnI CCSGG 1 cut(s) 208
BcoDI GTCTC 1 cut(s) 194
BfaI CTAG 3 cut(s) 141, 213, 234
BfmI CTRYAG 1 cut(s) 250
BfuAI ACCTGC 1 cut(s) 257
BisI GCNGC 1 cut(s) 98
BlsI GCNGC 1 cut(s) 99
Bme1390I CCNGG 1 cut(s) 208
Bme18I GGWCC 2 cut(s) 10, 144
BmgT120I GGNCC 2 cut(s) 10, 144
BmiI GGNNCC 2 cut(s) 27, 180
BmrFI CCNGG 1 cut(s) 208
BpiI GAAGAC 1 cut(s) 117
BpmI CTGGAG 1 cut(s) 247
BpuEI CTTGAG 1 cut(s) 227
BpuMI CCSGG 1 cut(s) 208
Bsa29I ATCGAT 1 cut(s) 132
BsaBI GATNNNNATC 1 cut(s) 177
BsaI GGTCTC 1 cut(s) 194
BsaJI CCNNGG 1 cut(s) 57
BsaWI WCCGGW 1 cut(s) 15
Bsc4I CCNNNNNNNGG 1 cut(s) 22
Bse118I RCCGGY 1 cut(s) 15
Bse8I GATNNNNATC 1 cut(s) 177
BseCI ATCGAT 1 cut(s) 132
BseDI CCNNGG 1 cut(s) 57
BseJI GATNNNNATC 1 cut(s) 177
BseLI CCNNNNNNNGG 1 cut(s) 22
BseMII CTCAG 1 cut(s) 84
BseRI GAGGAG 2 cut(s) 110, 220
BseXI GCAGC 1 cut(s) 109
BshFI GGCC 2 cut(s) 211, 314
BshTI ACCGGT 1 cut(s) 15
BshVI ATCGAT 1 cut(s) 132
BsiSI CCGG 2 cut(s) 16, 208
BslFI GGGAC 1 cut(s) 321
BslI CCNNNNNNNGG 1 cut(s) 22
BsmAI GTCTC 1 cut(s) 194
BsmFI GGGAC 1 cut(s) 321
BsmI GAATGC 1 cut(s) 339
BsnI GGCC 2 cut(s) 211, 314
Bso31I GGTCTC 1 cut(s) 194
Bsp143I GATC 3 cut(s) 178, 225, 295
BspACI CCGC 5 cut(s) 95, 147, 204, 267, 278
BspANI GGCC 2 cut(s) 211, 314
BspCNI CTCAG 1 cut(s) 83
BspDI ATCGAT 1 cut(s) 132
BspLI GGNNCC 2 cut(s) 27, 180
BspMAI CTGCAG 1 cut(s) 254
BspMI ACCTGC 1 cut(s) 257
BspPI GGATC 3 cut(s) 173, 186, 233
BspTNI GGTCTC 1 cut(s) 194
BsrBI CCGCTC 1 cut(s) 149
BsrFI RCCGGY 1 cut(s) 15
BssAI RCCGGY 1 cut(s) 15
BssECI CCNNGG 1 cut(s) 57
BssMI GATC 3 cut(s) 178, 225, 295
Bst4CI ACNGT 1 cut(s) 7
BstDEI CTNAG 1 cut(s) 70
BstDSI CCRYGG 1 cut(s) 57
BstKTI GATC 3 cut(s) 181, 228, 298
BstMAI GTCTC 1 cut(s) 194
BstMBI GATC 3 cut(s) 178, 225, 295
BstMWI GCNNNNNNNGC 1 cut(s) 146
BstSCI CCNGG 1 cut(s) 206
BstSFI CTRYAG 1 cut(s) 250
BstV1I GCAGC 1 cut(s) 109
BstV2I GAAGAC 1 cut(s) 117
BstX2I RGATCY 2 cut(s) 178, 225
BstYI RGATCY 2 cut(s) 178, 225
Bsu15I ATCGAT 1 cut(s) 132
BsuRI GGCC 2 cut(s) 211, 314
BsuTUI ATCGAT 1 cut(s) 132
BtgI CCRYGG 1 cut(s) 57
BtsI GCAGTG 1 cut(s) 259
BtsIMutI CAGTG 1 cut(s) 259
BveI ACCTGC 1 cut(s) 257
Cfr10I RCCGGY 1 cut(s) 15
Cfr13I GGNCC 2 cut(s) 10, 144
ClaI ATCGAT 1 cut(s) 132
CspAI ACCGGT 1 cut(s) 15
CviJI RGCY 3 cut(s) 100, 211, 314
CviKI_1 RGCY 3 cut(s) 100, 211, 314
DdeI CTNAG 1 cut(s) 70
DpnI GATC 3 cut(s) 180, 227, 297
DpnII GATC 3 cut(s) 178, 225, 295
Eco147I AGGCCT 1 cut(s) 314
Eco31I GGTCTC 1 cut(s) 194
Eco47I GGWCC 2 cut(s) 10, 144
FaiI YATR 1 cut(s) 50
FaqI GGGAC 1 cut(s) 321
FblI GTMKAC 1 cut(s) 75
Fnu4HI GCNGC 1 cut(s) 98
Fsp4HI GCNGC 1 cut(s) 98
FspBI CTAG 3 cut(s) 141, 213, 234
GluI GCNGC 1 cut(s) 98
GsuI CTGGAG 1 cut(s) 247
HaeIII GGCC 2 cut(s) 211, 314
HapII CCGG 2 cut(s) 16, 208
HincII GTYRAC 1 cut(s) 76
HindII GTYRAC 1 cut(s) 76
HinfI GANTC 3 cut(s) 77, 173, 238
HpaII CCGG 2 cut(s) 16, 208
HphI GGTGA 1 cut(s) 292
Hpy166II GTNNAC 2 cut(s) 10, 76
Hpy188I TCNGA 4 cut(s) 85, 178, 183, 295
Hpy188III TCNNGA 1 cut(s) 244
Hpy8I GTNNAC 2 cut(s) 10, 76
Hpy99I CGWCG 1 cut(s) 85
HpyCH4III ACNGT 1 cut(s) 7
HpyCH4V TGCA 2 cut(s) 90, 252
HpyF10VI GCNNNNNNNGC 1 cut(s) 146
HpyF3I CTNAG 1 cut(s) 70
Kzo9I GATC 3 cut(s) 178, 225, 295
Lsp1109I GCAGC 1 cut(s) 109
MaeI CTAG 3 cut(s) 141, 213, 234
MaeIII GTNAC 2 cut(s) 43, 271
MalI GATC 3 cut(s) 180, 227, 297
MbiI CCGCTC 1 cut(s) 149
MboI GATC 3 cut(s) 178, 225, 295
MboII GAAGA 4 cut(s) 119, 122, 182, 332
MfeI CAATTG 1 cut(s) 345
MflI RGATCY 2 cut(s) 178, 225
MluCI AATT 3 cut(s) 125, 220, 345
MlyI GAGTC 1 cut(s) 71
MmeI TCCRAC 2 cut(s) 63, 197
MnlI CCTC 3 cut(s) 128, 131, 241
MspA1I CMGCKG 1 cut(s) 267
MspI CCGG 2 cut(s) 16, 208
MspR9I CCNGG 1 cut(s) 208
MunI CAATTG 1 cut(s) 345
Mva1269I GAATGC 1 cut(s) 339
MwoI GCNNNNNNNGC 1 cut(s) 146
NciI CCSGG 1 cut(s) 208
NdeII GATC 3 cut(s) 178, 225, 295
NlaIV GGNNCC 2 cut(s) 27, 180
PceI AGGCCT 1 cut(s) 314
PctI GAATGC 1 cut(s) 339
PfeI GAWTC 2 cut(s) 173, 238
PinAI ACCGGT 1 cut(s) 15
PkrI GCNGC 1 cut(s) 99
PleI GAGTC 1 cut(s) 71
PpsI GAGTC 1 cut(s) 71
PspN4I GGNNCC 2 cut(s) 27, 180
PspPI GGNCC 2 cut(s) 10, 144
PstI CTGCAG 1 cut(s) 254
PsuI RGATCY 2 cut(s) 178, 225
SalI GTCGAC 1 cut(s) 74
SatI GCNGC 1 cut(s) 98
Sau3AI GATC 3 cut(s) 178, 225, 295
Sau96I GGNCC 2 cut(s) 10, 144
SchI GAGTC 1 cut(s) 71
ScrFI CCNGG 1 cut(s) 208
SetI ASST 2 cut(s) 146, 251
SfcI CTRYAG 1 cut(s) 250
SgrAI CRCCGGYG 1 cut(s) 15
SinI GGWCC 2 cut(s) 10, 144
SmlI CTYRAG 1 cut(s) 242
SmoI CTYRAG 1 cut(s) 242
Sse9I AATT 3 cut(s) 125, 220, 345
SseBI AGGCCT 1 cut(s) 314
SsiI CCGC 5 cut(s) 95, 147, 204, 267, 278
SspMI CTAG 3 cut(s) 141, 213, 234
StuI AGGCCT 1 cut(s) 314
StyD4I CCNGG 1 cut(s) 206
TaaI ACNGT 1 cut(s) 7
TaqI TCGA 2 cut(s) 75, 132
TasI AATT 3 cut(s) 125, 220, 345
TfiI GAWTC 2 cut(s) 173, 238
TscAI CASTG 1 cut(s) 259
TseI GCWGC 1 cut(s) 97
TspDTI ATGAA 3 cut(s) 65, 80, 118
TspGWI ACGGA 1 cut(s) 46
TspRI CASTG 1 cut(s) 259
VpaK11BI GGWCC 2 cut(s) 10, 144
XapI RAATTY 1 cut(s) 125
XmiI GTMKAC 1 cut(s) 75
XspI CTAG 3 cut(s) 141, 213, 234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.