Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0013806

Physical Location & Seq

Genomic Coordinates Forward (+)

7978574 .. 7980881

Gene Structure 2308 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGCCACCAACTATAACTCTCTCCTGCTATTCTCTTGCAATTTATCCCTCACTTTATCTATCCTTTGTTAGTTGGAATTGGAGTTGGAATTGGAATTGGGGGATGGAAGGATTGGATGCCCTGATTCAGAGATTACTGGAGGGAAAGGTCAACAGAGGCAAAAGGATTCCTCTAGTAGAGACCGAAGTCCGCCAACTTTGCGTCACTGCTAAAGAAGTCTTTCTCAGGCAGCCTAATCTTCTTGAATTGGCAGCTCCCATTAATGTTTGTGGTGATATACATGGTCAATATCATGATCTCTTGCGACTTTTTGAGTTAGGTGGCTTTCCACCTGATGCGAATTACGTGTTTCTCGGAGACTATGTAGACAGAGGAAAACAGAGCGTAGAGACAATATGCCTTCTCCTTGCTTACAAAATAAAATATCCAGACAACTTTTTCCTCCTCCGAGGGAACCACGAATGCGCTTCCATCAACAGAATATATGGATTCTACGACGAGTGTAAGCGTCGGTTCAGCGTCCGGCTATGGAAGATCTTCACAGACTGCTTTAATTGTTTGCCTGTCGCCGCAATCATTGATGACAAGATCTTCTGCATGCATGGTGGCCTATCTCCTGAGTTGGAAACCTTGGATAAGCTCAGAGCTATACAGAGGCCGGTTGATGTACCGGACCAGGGACTATTATGTGACATTCTTTGGTCAGATCCAGATAGAGACATTAAAGGGTGGGGTGAGAATGATAGGGGTGTTTCGTATACTTTTGGACCTGATAGGGTGGCTGAATTCTTGATGAAACATGATATGGATCTCATATGCCGGGCACACCAGGTTGTTGAAGATGGTTACGAATTCTTTGCAGAAAGGCAGCTGGTCACCATATTCTCTGCACCAAACTATTGCGGAGAGTTCAACAATGCAGGTGCCTTAATGAGAGTGGATAAGAGTTTGCTTTGCTCATTTCAGCTAGTGAAACCTTGGAGAGGGAAAGGTACAGTAGATAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03015 ko04022 ko04024 ko04113 ko04114 ko04218 ko04261 ko04270 ko04390 ko04510 ko04611 ko04720 ko04728 ko04750 ko04810 ko04910 ko04921 ko04931 ko05031 ko05034 ko05168 ko05205 map03015 map04022 map04024 map04113 map04114 map04218 map04261 map04270 map04390 map04510 map04611 map04720 map04728 map04750 map04810 map04910 map04921 map04931 map05031 map05034 map05168 map05205

Pfam Domains

Protein Families

Metallophos STPPase_N

Protein Analysis

335

Amino Acids

38.48

Weight (kDa)

5.48

Isoelectric Point (pI)

30.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
STPPase_N	PF16891	38 - 83	1.9e-15	Serine-threonine protein phosphatase N-terminal domain
Metallophos	PF00149	86 - 279	2.9e-50	Calcineurin-like phosphoesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013806)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G43380 AT5G43380 AT5G43380
fragaria_vesca	FvH4_6g09230
malus_domestica	MD04G1179900.v1.1 MD12G1195100.v1.1
prunus_persica	Prupe.6G299800_v2.0.a1 Prupe.6G299800_v2.0.a1
pyrus_communis	pycom04g15910 pycom12g18130
rosa_chinensis	RchiOBHm_Chr3g0459571
rosa_laevigata	RLG00000025079
rosa_multiflora	Rmu_sc0000240.1_g000007
rosa_roxburghii	Rroxscaffold_6G00420180
rosa_rugosa	Rorug03G0036400
rosa_samantha	Rh3DG099000
rosa_wichuraiana	Rw0G013870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	911
Acc36I	ACCTGC	1 cut(s)	911
AccB1I	GGYRCC	1 cut(s)	923
AccI	GTMKAC	2 cut(s)	366, 758
AciI	CCGC	3 cut(s)	190, 570, 903
AclWI	GGATC	2 cut(s)	701, 816
AcsI	RAATTY	2 cut(s)	785, 851
AfaI	GTAC	2 cut(s)	669, 994
AfiI	CCNNNNNNNGG	2 cut(s)	677, 983
AflIII	ACRYGT	1 cut(s)	345
AgsI	TTSAA	3 cut(s)	245, 839, 913
AjnI	CCWGG	2 cut(s)	675, 828
AluBI	AGCT	5 cut(s)	254, 640, 647, 871, 967
AluI	AGCT	5 cut(s)	254, 640, 647, 871, 967
Alw26I	GTCTC	4 cut(s)	173, 351, 383, 711
AlwI	GGATC	2 cut(s)	701, 816
AoxI	GGCC	2 cut(s)	607, 656
ApeKI	GCWGC	3 cut(s)	229, 251, 868
ApoI	RAATTY	2 cut(s)	785, 851
AseI	ATTAAT	1 cut(s)	261
Asp700I	GAANNNNTTC	2 cut(s)	219, 536
AspLEI	GCGC	1 cut(s)	467
AspS9I	GGNCC	2 cut(s)	673, 767
AsuC2I	CCSGG	1 cut(s)	821
AsuHPI	GGTGA	3 cut(s)	284, 746, 868
AvaII	GGWCC	2 cut(s)	673, 767
BaeGI	GKGCMC	1 cut(s)	826
BanI	GGYRCC	1 cut(s)	923
BbvI	GCAGC	3 cut(s)	241, 263, 880
BccI	CCATC	3 cut(s)	97, 479, 836
BcgI	CGANNNNNNTGC	2 cut(s)	839, 873
BciT130I	CCWGG	2 cut(s)	677, 830
BcnI	CCSGG	1 cut(s)	821
BcoDI	GTCTC	4 cut(s)	173, 351, 383, 711
BfaI	CTAG	2 cut(s)	173, 968
BfuAI	ACCTGC	1 cut(s)	911
BglII	AGATCT	2 cut(s)	534, 588
BisI	GCNGC	4 cut(s)	230, 252, 570, 869
BlsI	GCNGC	4 cut(s)	231, 253, 571, 870
Bme1390I	CCNGG	3 cut(s)	677, 821, 830
Bme18I	GGWCC	2 cut(s)	673, 767
BmgT120I	GGNCC	2 cut(s)	673, 767
BmiI	GGNNCC	2 cut(s)	455, 925
BmrFI	CCNGG	3 cut(s)	677, 821, 830
BmsI	GCATC	2 cut(s)	106, 325
BoxI	GACNNNNGTC	1 cut(s)	185
BpmI	CTGGAG	1 cut(s)	158
BpuMI	CCSGG	1 cut(s)	821
BsaAI	YACGTR	1 cut(s)	346
BsaBI	GATNNNNATC	1 cut(s)	807
BsaI	GGTCTC	1 cut(s)	173
BsaJI	CCNNGG	4 cut(s)	448, 630, 676, 977
BsaWI	WCCGGW	1 cut(s)	670
BsaXI	ACNNNNNCTCC	2 cut(s)	348, 378
Bsc4I	CCNNNNNNNGG	2 cut(s)	677, 983
Bse118I	RCCGGY	1 cut(s)	658
Bse1I	ACTGG	1 cut(s)	141
Bse8I	GATNNNNATC	1 cut(s)	807
BseBI	CCWGG	2 cut(s)	677, 830
BseDI	CCNNGG	4 cut(s)	448, 630, 676, 977
BseGI	GGATG	2 cut(s)	108, 121
BseJI	GATNNNNATC	1 cut(s)	807
BseLI	CCNNNNNNNGG	2 cut(s)	677, 983
BseMII	CTCAG	3 cut(s)	238, 609, 655
BseNI	ACTGG	1 cut(s)	141
BseRI	GAGGAG	1 cut(s)	434
BseSI	GKGCMC	1 cut(s)	826
BseXI	GCAGC	3 cut(s)	241, 263, 880
BsgI	GTGCAG	1 cut(s)	873
BshFI	GGCC	2 cut(s)	609, 658
BshNI	GGYRCC	1 cut(s)	923
BsiSI	CCGG	4 cut(s)	523, 659, 671, 820
BslFI	GGGAC	1 cut(s)	693
BslI	CCNNNNNNNGG	2 cut(s)	677, 983
BsmAI	GTCTC	4 cut(s)	173, 351, 383, 711
BsmFI	GGGAC	1 cut(s)	693
BsmI	GAATGC	1 cut(s)	467
BsnI	GGCC	2 cut(s)	609, 658
Bso31I	GGTCTC	1 cut(s)	173
Bsp1286I	GDGCHC	1 cut(s)	826
Bsp143I	GATC	5 cut(s)	295, 534, 588, 706, 808
BspACI	CCGC	3 cut(s)	190, 570, 903
BspANI	GGCC	2 cut(s)	609, 658
BspCNI	CTCAG	3 cut(s)	237, 610, 654
BspHI	TCATGA	1 cut(s)	292
BspLI	GGNNCC	2 cut(s)	455, 925
BspMI	ACCTGC	1 cut(s)	911
BspPI	GGATC	2 cut(s)	701, 816
BspT107I	GGYRCC	1 cut(s)	923
BspTNI	GGTCTC	1 cut(s)	173
BsrFI	RCCGGY	1 cut(s)	658
BsrI	ACTGG	1 cut(s)	141
BssAI	RCCGGY	1 cut(s)	658
BssECI	CCNNGG	4 cut(s)	448, 630, 676, 977
BssMI	GATC	5 cut(s)	295, 534, 588, 706, 808
BssNAI	GTATAC	1 cut(s)	759
BssT1I	CCWWGG	2 cut(s)	630, 977
Bst1107I	GTATAC	1 cut(s)	759
Bst2UI	CCWGG	2 cut(s)	677, 830
Bst4CI	ACNGT	1 cut(s)	997
BstBAI	YACGTR	1 cut(s)	346
BstC8I	GCNNGC	1 cut(s)	599
BstDEI	CTNAG	3 cut(s)	224, 618, 641
BstEII	GGTNACC	1 cut(s)	874
BstENI	CCTNNNNNAGG	1 cut(s)	981
BstF5I	GGATG	2 cut(s)	108, 121
BstHHI	GCGC	1 cut(s)	467
BstKTI	GATC	5 cut(s)	298, 537, 591, 709, 811
BstMAI	GTCTC	4 cut(s)	173, 351, 383, 711
BstMBI	GATC	5 cut(s)	295, 534, 588, 706, 808
BstMWI	GCNNNNNNNGC	1 cut(s)	198
BstNI	CCWGG	2 cut(s)	677, 830
BstNSI	RCATGY	1 cut(s)	601
BstPAI	GACNNNNGTC	1 cut(s)	185
BstPI	GGTNACC	1 cut(s)	874
BstSCI	CCNGG	3 cut(s)	675, 819, 828
BstSLI	GKGCMC	1 cut(s)	826
BstV1I	GCAGC	3 cut(s)	241, 263, 880
BstX2I	RGATCY	4 cut(s)	534, 588, 706, 808
BstYI	RGATCY	4 cut(s)	534, 588, 706, 808
BstZ17I	GTATAC	1 cut(s)	759
BsuRI	GGCC	2 cut(s)	609, 658
BtsCI	GGATG	2 cut(s)	108, 121
BtsI	GCAGTG	1 cut(s)	204
BtsIMutI	CAGTG	1 cut(s)	204
BveI	ACCTGC	1 cut(s)	911
Cac8I	GCNNGC	1 cut(s)	599
CciI	TCATGA	1 cut(s)	292
CfoI	GCGC	1 cut(s)	467
Cfr10I	RCCGGY	1 cut(s)	658
Cfr13I	GGNCC	2 cut(s)	673, 767
CseI	GACGC	3 cut(s)	190, 497, 508
CsiI	ACCWGGT	1 cut(s)	828
Csp6I	GTAC	2 cut(s)	668, 993
CviAII	CATG	5 cut(s)	281, 293, 598, 602, 800
CviQI	GTAC	2 cut(s)	668, 993
DdeI	CTNAG	3 cut(s)	224, 618, 641
DpnI	GATC	5 cut(s)	297, 536, 590, 708, 810
DpnII	GATC	5 cut(s)	295, 534, 588, 706, 808
EciI	GGCGGA	1 cut(s)	179
Eco130I	CCWWGG	2 cut(s)	630, 977
Eco31I	GGTCTC	1 cut(s)	173
Eco47I	GGWCC	2 cut(s)	673, 767
Eco91I	GGTNACC	1 cut(s)	874
EcoNI	CCTNNNNNAGG	1 cut(s)	981
EcoO65I	GGTNACC	1 cut(s)	874
EcoRI	GAATTC	2 cut(s)	785, 851
EcoRII	CCWGG	2 cut(s)	675, 828
EcoT14I	CCWWGG	2 cut(s)	630, 977
EcoT22I	ATGCAT	1 cut(s)	603
ErhI	CCWWGG	2 cut(s)	630, 977
FaeI	CATG	5 cut(s)	284, 296, 601, 605, 803
FaqI	GGGAC	1 cut(s)	693
FatI	CATG	5 cut(s)	280, 292, 597, 601, 799
FauNDI	CATATG	1 cut(s)	815
FblI	GTMKAC	2 cut(s)	366, 758
Fnu4HI	GCNGC	4 cut(s)	230, 252, 570, 869
FokI	GGATG	2 cut(s)	115, 128
Fsp4HI	GCNGC	4 cut(s)	230, 252, 570, 869
FspBI	CTAG	2 cut(s)	173, 968
GlaI	GCGC	1 cut(s)	466
GluI	GCNGC	4 cut(s)	230, 252, 570, 869
GsuI	CTGGAG	1 cut(s)	158
HaeIII	GGCC	2 cut(s)	609, 658
HapII	CCGG	4 cut(s)	523, 659, 671, 820
HgaI	GACGC	3 cut(s)	190, 497, 508
HhaI	GCGC	1 cut(s)	467
Hin1II	CATG	5 cut(s)	284, 296, 601, 605, 803
Hin6I	GCGC	1 cut(s)	465
HinP1I	GCGC	1 cut(s)	465
HincII	GTYRAC	1 cut(s)	151
HindII	GTYRAC	1 cut(s)	151
HinfI	GANTC	3 cut(s)	124, 166, 489
HpaII	CCGG	4 cut(s)	523, 659, 671, 820
HphI	GGTGA	3 cut(s)	284, 746, 868
Hpy166II	GTNNAC	3 cut(s)	151, 367, 759
Hpy188I	TCNGA	5 cut(s)	129, 356, 449, 644, 706
Hpy188III	TCNNGA	6 cut(s)	242, 293, 428, 617, 710, 790
Hpy8I	GTNNAC	3 cut(s)	151, 367, 759
Hpy99I	CGWCG	2 cut(s)	500, 513
HpyAV	CCTTC	2 cut(s)	101, 410
HpyCH4III	ACNGT	1 cut(s)	997
HpyCH4IV	ACGT	1 cut(s)	345
HpyCH4V	TGCA	6 cut(s)	38, 597, 601, 860, 890, 920
HpyF10VI	GCNNNNNNNGC	1 cut(s)	198
HpyF3I	CTNAG	3 cut(s)	224, 618, 641
HpySE526I	ACGT	1 cut(s)	345
Hsp92II	CATG	5 cut(s)	284, 296, 601, 605, 803
HspAI	GCGC	1 cut(s)	465
Kzo9I	GATC	5 cut(s)	295, 534, 588, 706, 808
LmnI	GCTCC	1 cut(s)	259
Lsp1109I	GCAGC	3 cut(s)	241, 263, 880
LweI	GCATC	2 cut(s)	106, 325
MabI	ACCWGGT	1 cut(s)	828
MaeI	CTAG	2 cut(s)	173, 968
MaeII	ACGT	1 cut(s)	345
MaeIII	GTNAC	4 cut(s)	202, 689, 845, 874
MalI	GATC	5 cut(s)	297, 536, 590, 708, 810
MboI	GATC	5 cut(s)	295, 534, 588, 706, 808
MboII	GAAGA	5 cut(s)	230, 529, 544, 583, 851
MflI	RGATCY	4 cut(s)	534, 588, 706, 808
MhlI	GDGCHC	1 cut(s)	826
MmeI	TCCRAC	3 cut(s)	53, 65, 603
Mph1103I	ATGCAT	1 cut(s)	603
MroXI	GAANNNNTTC	2 cut(s)	219, 536
MseI	TTAA	4 cut(s)	261, 552, 723, 929
MspA1I	CMGCKG	1 cut(s)	871
MspI	CCGG	4 cut(s)	523, 659, 671, 820
MspR9I	CCNGG	3 cut(s)	677, 821, 830
Mva1269I	GAATGC	1 cut(s)	467
MvaI	CCWGG	2 cut(s)	677, 830
MwoI	GCNNNNNNNGC	1 cut(s)	198
NciI	CCSGG	1 cut(s)	821
NdeI	CATATG	1 cut(s)	815
NdeII	GATC	5 cut(s)	295, 534, 588, 706, 808
NlaIII	CATG	5 cut(s)	284, 296, 601, 605, 803
NlaIV	GGNNCC	2 cut(s)	455, 925
NmuCI	GTSAC	3 cut(s)	202, 689, 874
NsiI	ATGCAT	1 cut(s)	603
NspI	RCATGY	1 cut(s)	601
PaeI	GCATGC	1 cut(s)	601
PagI	TCATGA	1 cut(s)	292
PaqCI	CACCTGC	1 cut(s)	911
PctI	GAATGC	1 cut(s)	467
PdmI	GAANNNNTTC	2 cut(s)	219, 536
PfeI	GAWTC	3 cut(s)	124, 166, 489
PkrI	GCNGC	4 cut(s)	231, 253, 571, 870
Ppu21I	YACGTR	1 cut(s)	346
PshAI	GACNNNNGTC	1 cut(s)	185
PshBI	ATTAAT	1 cut(s)	261
Psp6I	CCWGG	2 cut(s)	675, 828
PspEI	GGTNACC	1 cut(s)	874
PspGI	CCWGG	2 cut(s)	675, 828
PspN4I	GGNNCC	2 cut(s)	455, 925
PspPI	GGNCC	2 cut(s)	673, 767
PsuI	RGATCY	4 cut(s)	534, 588, 706, 808
PvuII	CAGCTG	1 cut(s)	871
RsaI	GTAC	2 cut(s)	669, 994
RsaNI	GTAC	2 cut(s)	668, 993
SaqAI	TTAA	4 cut(s)	261, 552, 723, 929
SatI	GCNGC	4 cut(s)	230, 252, 570, 869
Sau3AI	GATC	5 cut(s)	295, 534, 588, 706, 808
Sau96I	GGNCC	2 cut(s)	673, 767
ScrFI	CCNGG	3 cut(s)	677, 821, 830
SduI	GDGCHC	1 cut(s)	826
SexAI	ACCWGGT	1 cut(s)	828
SfaNI	GCATC	2 cut(s)	106, 325
SinI	GGWCC	2 cut(s)	673, 767
SphI	GCATGC	1 cut(s)	601
SsiI	CCGC	3 cut(s)	190, 570, 903
SspMI	CTAG	2 cut(s)	173, 968
StyD4I	CCNGG	3 cut(s)	675, 819, 828
StyI	CCWWGG	2 cut(s)	630, 977
TaaI	ACNGT	1 cut(s)	997
TaiI	ACGT	1 cut(s)	348
TaqII	GACCGA	1 cut(s)	197
TauI	GCSGC	1 cut(s)	572
TfiI	GAWTC	3 cut(s)	124, 166, 489
Tru1I	TTAA	4 cut(s)	261, 552, 723, 929
Tru9I	TTAA	4 cut(s)	261, 552, 723, 929
TscAI	CASTG	1 cut(s)	211
TseFI	GTSAC	3 cut(s)	202, 689, 874
TseI	GCWGC	3 cut(s)	229, 251, 868
Tsp45I	GTSAC	3 cut(s)	202, 689, 874
TspDTI	ATGAA	1 cut(s)	809
TspRI	CASTG	1 cut(s)	211
VpaK11BI	GGWCC	2 cut(s)	673, 767
VspI	ATTAAT	1 cut(s)	261
XagI	CCTNNNNNAGG	1 cut(s)	981
XapI	RAATTY	2 cut(s)	785, 851
XceI	RCATGY	1 cut(s)	601
XmiI	GTMKAC	2 cut(s)	366, 758
XmnI	GAANNNNTTC	2 cut(s)	219, 536
XspI	CTAG	2 cut(s)	173, 968
Zsp2I	ATGCAT	1 cut(s)	603

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.