Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0012275

Physical Location & Seq

Genomic Coordinates Reverse (-)

9534608 .. 9536144

Gene Structure 1537 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGACGACGAATCAAGACGACGCGTCGCAGAATCATGGCCAGCAACAACAAAAACAATCCCCGCCGGTTGTCCCCACGGCTCCACCGGCTGCTGACGTGGAGAGCCAGACGGAGCCGGCACCGGCCCAGGCCCGGGCGGCTGGGAGCGGGTTCGGGGTGGCAGGGATCATACGGCGGTGGAAGAGAGATGACTTGTTGAGGAAAGGCTCTCTGGCGTTGAGAGGACTGTCCTTGGTCTTCTCTTTGCTGGCTTTCATCATCATGGCCAGTAACAAACACGGCGATTGGAAGGACTTCGATAAATATGAAGAATACAGGTATCTGTTGGGAATAGCGATTTTGGCGACGTTGTACACCGGCGCACAAGCTTTCAAAAACGCCACAGGGAAAGAGATGTTTCAGCGCCGGACGTCGGCGCTGGCCGACTTCATCGGAGATCAGATTATGGCATACCTTCTGATATCATCATCATCTTCGGCGATTCCGTTAACAAATAGGATGAGGGAATCACAAGACAACATCTTTACAGACGCCTCTGCATCTGCCATTAGTATGGCTTTTCTCGCTTTCGTTTCCCTTGCACTCTTGGCCCTCATTTCCGGACACAAGTTATCTTCTCAGTCTTACATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0048037 GO:0051536 GO:0051540 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF588

Protein Analysis

210

Amino Acids

22.81

Weight (kDa)

8.86

Isoelectric Point (pI)

51.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CASP_dom	PF04535	65 - 191	9.8e-27	Casparian strip membrane protein domain
MARVEL	PF01284	67 - 196	1.5e-08	Membrane-associating domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012275)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38480
fragaria_vesca	FvH4_6g10520
malus_domestica	MD04G1167600.v1.1 MD12G1180900.v1.1
prunus_persica	Prupe.6G285800_v2.0.a1 Prupe.6G285900_v2.0.a1
pyrus_communis	pycom04g14880 pycom12g17050
rosa_chinensis	RchiOBHm_Chr3g0461491
rosa_laevigata	RLG00000024930
rosa_multiflora	Rmu_sc0002677.1_g000004
rosa_roxburghii	Rroxscaffold_6G00418240 Rroxscaffold_6G00418570
rosa_rugosa	Rorug03G0051200.1
rosa_samantha	Rh3AG108900 Rh3BG112600 Rh3CG114300 Rh3DG114400
rosa_wichuraiana	Rw3G009260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	413
AccB1I	GGYRCC	1 cut(s)	118
AccBSI	CCGCTC	1 cut(s)	147
AccII	CGCG	1 cut(s)	23
AccIII	TCCGGA	1 cut(s)	599
AciI	CCGC	4 cut(s)	62, 137, 147, 175
AclWI	GGATC	1 cut(s)	173
AcoI	YGGCCR	3 cut(s)	37, 264, 420
AcyI	GRCGYC	2 cut(s)	410, 531
AfaI	GTAC	1 cut(s)	353
AfiI	CCNNNNNNNGG	3 cut(s)	132, 133, 412
AflIII	ACRYGT	1 cut(s)	21
AgsI	TTSAA	1 cut(s)	373
AhdI	GACNNNNNGTC	1 cut(s)	22
AjiI	CACGTC	1 cut(s)	97
AjnI	CCWGG	1 cut(s)	126
AluBI	AGCT	1 cut(s)	368
AluI	AGCT	1 cut(s)	368
AlwI	GGATC	1 cut(s)	173
Ama87I	CYCGRG	1 cut(s)	132
Aor13HI	TCCGGA	1 cut(s)	599
AoxI	GGCC	6 cut(s)	37, 123, 129, 264, 420, 588
ApeKI	GCWGC	1 cut(s)	89
Asp700I	GAANNNNTTC	1 cut(s)	293
AspLEI	GCGC	3 cut(s)	362, 405, 418
AspS9I	GGNCC	3 cut(s)	124, 130, 589
AsuC2I	CCSGG	2 cut(s)	133, 134
AvaI	CYCGRG	1 cut(s)	132
BalI	TGGCCA	2 cut(s)	39, 266
BanI	GGYRCC	1 cut(s)	118
BbsI	GAAGAC	1 cut(s)	229
BbvI	GCAGC	1 cut(s)	76
BceAI	ACGGC	3 cut(s)	93, 188, 295
BciT130I	CCWGG	1 cut(s)	128
BcnI	CCSGG	2 cut(s)	133, 134
BfoI	RGCGCY	2 cut(s)	406, 419
BglI	GCCNNNNNGGC	1 cut(s)	137
BisI	GCNGC	2 cut(s)	90, 138
BlsI	GCNGC	2 cut(s)	91, 139
Bme1390I	CCNGG	3 cut(s)	128, 133, 134
BmeRI	GACNNNNNGTC	1 cut(s)	22
BmeT110I	CYCGRG	1 cut(s)	132
BmgBI	CACGTC	1 cut(s)	97
BmgT120I	GGNCC	3 cut(s)	124, 130, 589
BmiI	GGNNCC	3 cut(s)	81, 114, 120
BmrFI	CCNGG	3 cut(s)	128, 133, 134
BmsI	GCATC	1 cut(s)	548
BpiI	GAAGAC	1 cut(s)	229
BpuMI	CCSGG	2 cut(s)	133, 134
BsaHI	GRCGYC	2 cut(s)	410, 531
BsaJI	CCNNGG	4 cut(s)	75, 126, 132, 231
BsaWI	WCCGGW	1 cut(s)	599
Bsc4I	CCNNNNNNNGG	3 cut(s)	132, 133, 412
Bse118I	RCCGGY	5 cut(s)	64, 85, 115, 121, 356
Bse1I	ACTGG	1 cut(s)	267
BseAI	TCCGGA	1 cut(s)	599
BseBI	CCWGG	1 cut(s)	128
BseDI	CCNNGG	4 cut(s)	75, 126, 132, 231
BseGI	GGATG	1 cut(s)	504
BseLI	CCNNNNNNNGG	3 cut(s)	132, 133, 412
BseMII	CTCAG	1 cut(s)	632
BseNI	ACTGG	1 cut(s)	267
BseXI	GCAGC	1 cut(s)	76
BseYI	CCCAGC	1 cut(s)	140
Bsh1236I	CGCG	1 cut(s)	23
BshFI	GGCC	6 cut(s)	39, 125, 131, 266, 422, 590
BshNI	GGYRCC	1 cut(s)	118
BsiHKCI	CYCGRG	1 cut(s)	132
BsiSI	CCGG	8 cut(s)	65, 86, 116, 122, 133, 357, 406, 600
BslFI	GGGAC	1 cut(s)	56
BslI	CCNNNNNNNGG	3 cut(s)	132, 133, 412
BsmFI	GGGAC	1 cut(s)	56
BsnI	GGCC	6 cut(s)	39, 125, 131, 266, 422, 590
BsoBI	CYCGRG	1 cut(s)	132
Bsp13I	TCCGGA	1 cut(s)	599
Bsp1407I	TGTACA	1 cut(s)	351
Bsp143I	GATC	2 cut(s)	165, 436
BspACI	CCGC	4 cut(s)	62, 137, 147, 175
BspANI	GGCC	6 cut(s)	39, 125, 131, 266, 422, 590
BspCNI	CTCAG	1 cut(s)	631
BspEI	TCCGGA	1 cut(s)	599
BspFNI	CGCG	1 cut(s)	23
BspLI	GGNNCC	3 cut(s)	81, 114, 120
BspPI	GGATC	1 cut(s)	173
BspT107I	GGYRCC	1 cut(s)	118
BsrBI	CCGCTC	1 cut(s)	147
BsrFI	RCCGGY	5 cut(s)	64, 85, 115, 121, 356
BsrGI	TGTACA	1 cut(s)	351
BsrI	ACTGG	1 cut(s)	267
BssAI	RCCGGY	5 cut(s)	64, 85, 115, 121, 356
BssECI	CCNNGG	4 cut(s)	75, 126, 132, 231
BssMI	GATC	2 cut(s)	165, 436
BssNI	GRCGYC	2 cut(s)	410, 531
BssT1I	CCWWGG	1 cut(s)	231
Bst2UI	CCWGG	1 cut(s)	128
Bst4CI	ACNGT	1 cut(s)	228
Bst6I	CTCTTC	1 cut(s)	176
BstACI	GRCGYC	2 cut(s)	410, 531
BstAUI	TGTACA	1 cut(s)	351
BstC8I	GCNNGC	4 cut(s)	41, 117, 249, 420
BstDEI	CTNAG	1 cut(s)	618
BstDSI	CCRYGG	1 cut(s)	75
BstF5I	GGATG	1 cut(s)	504
BstFNI	CGCG	1 cut(s)	23
BstH2I	RGCGCY	2 cut(s)	406, 419
BstHHI	GCGC	3 cut(s)	362, 405, 418
BstKTI	GATC	2 cut(s)	168, 439
BstMBI	GATC	2 cut(s)	165, 436
BstMWI	GCNNNNNNNGC	5 cut(s)	86, 137, 341, 563, 587
BstNI	CCWGG	1 cut(s)	128
BstSCI	CCNGG	3 cut(s)	126, 131, 132
BstUI	CGCG	1 cut(s)	23
BstV1I	GCAGC	1 cut(s)	76
BstV2I	GAAGAC	1 cut(s)	229
BstXI	CCANNNNNNTGG	1 cut(s)	553
BsuRI	GGCC	6 cut(s)	39, 125, 131, 266, 422, 590
BtgI	CCRYGG	1 cut(s)	75
BtrI	CACGTC	1 cut(s)	97
BtsCI	GGATG	1 cut(s)	504
Cac8I	GCNNGC	4 cut(s)	41, 117, 249, 420
CfoI	GCGC	3 cut(s)	362, 405, 418
Cfr10I	RCCGGY	5 cut(s)	64, 85, 115, 121, 356
Cfr13I	GGNCC	3 cut(s)	124, 130, 589
Cfr9I	CCCGGG	1 cut(s)	132
CseI	GACGC	3 cut(s)	12, 29, 539
Csp6I	GTAC	1 cut(s)	352
CviAII	CATG	2 cut(s)	35, 262
CviQI	GTAC	1 cut(s)	352
DdeI	CTNAG	1 cut(s)	618
DpnI	GATC	2 cut(s)	167, 438
DpnII	GATC	2 cut(s)	165, 436
DriI	GACNNNNNGTC	1 cut(s)	22
EaeI	YGGCCR	3 cut(s)	37, 264, 420
Eam1104I	CTCTTC	1 cut(s)	176
Eam1105I	GACNNNNNGTC	1 cut(s)	22
EarI	CTCTTC	1 cut(s)	176
Eco130I	CCWWGG	1 cut(s)	231
Eco32I	GATATC	1 cut(s)	462
Eco88I	CYCGRG	1 cut(s)	132
EcoRII	CCWGG	1 cut(s)	126
EcoRV	GATATC	1 cut(s)	462
EcoT14I	CCWWGG	1 cut(s)	231
ErhI	CCWWGG	1 cut(s)	231
FaeI	CATG	2 cut(s)	38, 265
FaiI	YATR	7 cut(s)	36, 170, 263, 306, 446, 451, 554
FaqI	GGGAC	1 cut(s)	56
FatI	CATG	2 cut(s)	34, 261
FauI	CCCGC	2 cut(s)	69, 140
Fnu4HI	GCNGC	2 cut(s)	90, 138
FokI	GGATG	1 cut(s)	511
Fsp4HI	GCNGC	2 cut(s)	90, 138
GlaI	GCGC	3 cut(s)	361, 404, 417
GluI	GCNGC	2 cut(s)	90, 138
GsaI	CCCAGC	1 cut(s)	144
HaeII	RGCGCY	2 cut(s)	406, 419
HaeIII	GGCC	6 cut(s)	39, 125, 131, 266, 422, 590
HapII	CCGG	8 cut(s)	65, 86, 116, 122, 133, 357, 406, 600
HgaI	GACGC	3 cut(s)	12, 29, 539
HhaI	GCGC	3 cut(s)	362, 405, 418
Hin1I	GRCGYC	2 cut(s)	410, 531
Hin1II	CATG	2 cut(s)	38, 265
Hin6I	GCGC	3 cut(s)	360, 403, 416
HinP1I	GCGC	3 cut(s)	360, 403, 416
HincII	GTYRAC	1 cut(s)	489
HindII	GTYRAC	1 cut(s)	489
HindIII	AAGCTT	1 cut(s)	366
HinfI	GANTC	4 cut(s)	10, 31, 481, 506
HpaI	GTTAAC	1 cut(s)	489
HpaII	CCGG	8 cut(s)	65, 86, 116, 122, 133, 357, 406, 600
Hpy166II	GTNNAC	2 cut(s)	354, 489
Hpy188I	TCNGA	4 cut(s)	434, 441, 459, 632
Hpy188III	TCNNGA	2 cut(s)	14, 600
Hpy8I	GTNNAC	2 cut(s)	354, 489
Hpy99I	CGWCG	5 cut(s)	10, 23, 28, 349, 415
HpyAV	CCTTC	2 cut(s)	283, 464
HpyCH4III	ACNGT	1 cut(s)	228
HpyCH4IV	ACGT	3 cut(s)	96, 347, 410
HpyCH4V	TGCA	2 cut(s)	539, 581
HpyF10VI	GCNNNNNNNGC	5 cut(s)	86, 137, 341, 563, 587
HpyF3I	CTNAG	1 cut(s)	618
HpySE526I	ACGT	3 cut(s)	96, 347, 410
Hsp92I	GRCGYC	2 cut(s)	410, 531
Hsp92II	CATG	2 cut(s)	38, 265
HspAI	GCGC	3 cut(s)	360, 403, 416
Kpn2I	TCCGGA	1 cut(s)	599
KroI	GCCGGC	1 cut(s)	115
KroNI	GCCGGC	1 cut(s)	117
KspAI	GTTAAC	1 cut(s)	489
Kzo9I	GATC	2 cut(s)	165, 436
LmnI	GCTCC	3 cut(s)	85, 112, 144
Lsp1109I	GCAGC	1 cut(s)	76
LweI	GCATC	1 cut(s)	548
MaeII	ACGT	3 cut(s)	96, 347, 410
MaeIII	GTNAC	1 cut(s)	269
MalI	GATC	2 cut(s)	167, 438
MbiI	CCGCTC	1 cut(s)	147
MboI	GATC	2 cut(s)	165, 436
MboII	GAAGA	5 cut(s)	193, 229, 320, 465, 606
MlsI	TGGCCA	2 cut(s)	39, 266
MluI	ACGCGT	1 cut(s)	21
MluNI	TGGCCA	2 cut(s)	39, 266
MnlI	CCTC	5 cut(s)	192, 215, 495, 544, 602
Mox20I	TGGCCA	2 cut(s)	39, 266
MroI	TCCGGA	1 cut(s)	599
MroNI	GCCGGC	1 cut(s)	115
MroXI	GAANNNNTTC	1 cut(s)	293
MscI	TGGCCA	2 cut(s)	39, 266
MseI	TTAA	1 cut(s)	488
MslI	CAYNNNNRTG	2 cut(s)	260, 551
Msp20I	TGGCCA	2 cut(s)	39, 266
MspI	CCGG	8 cut(s)	65, 86, 116, 122, 133, 357, 406, 600
MspR9I	CCNGG	3 cut(s)	128, 133, 134
MvaI	CCWGG	1 cut(s)	128
MvnI	CGCG	1 cut(s)	23
MwoI	GCNNNNNNNGC	5 cut(s)	86, 137, 341, 563, 587
NaeI	GCCGGC	1 cut(s)	117
NciI	CCSGG	2 cut(s)	133, 134
NdeII	GATC	2 cut(s)	165, 436
NgoMIV	GCCGGC	1 cut(s)	115
NlaIII	CATG	2 cut(s)	38, 265
NlaIV	GGNNCC	3 cut(s)	81, 114, 120
PcsI	WCGNNNNNNNCGW	1 cut(s)	482
PdiI	GCCGGC	1 cut(s)	117
PdmI	GAANNNNTTC	1 cut(s)	293
PfeI	GAWTC	4 cut(s)	10, 31, 481, 506
PkrI	GCNGC	2 cut(s)	91, 139
Psp6I	CCWGG	1 cut(s)	126
PspFI	CCCAGC	1 cut(s)	140
PspGI	CCWGG	1 cut(s)	126
PspN4I	GGNNCC	3 cut(s)	81, 114, 120
PspPI	GGNCC	3 cut(s)	124, 130, 589
RsaI	GTAC	1 cut(s)	353
RsaNI	GTAC	1 cut(s)	352
RseI	CAYNNNNRTG	2 cut(s)	260, 551
SaqAI	TTAA	1 cut(s)	488
SatI	GCNGC	2 cut(s)	90, 138
Sau3AI	GATC	2 cut(s)	165, 436
Sau96I	GGNCC	3 cut(s)	124, 130, 589
ScrFI	CCNGG	3 cut(s)	128, 133, 134
SetI	ASST	6 cut(s)	99, 320, 350, 370, 413, 456
SfaNI	GCATC	1 cut(s)	548
SgrAI	CRCCGGYG	1 cut(s)	356
SmaI	CCCGGG	1 cut(s)	134
SmiMI	CAYNNNNRTG	2 cut(s)	260, 551
SrfI	GCCCGGGC	1 cut(s)	134
SsiI	CCGC	4 cut(s)	62, 137, 147, 175
StyD4I	CCNGG	3 cut(s)	126, 131, 132
StyI	CCWWGG	1 cut(s)	231
TaaI	ACNGT	1 cut(s)	228
TaiI	ACGT	3 cut(s)	99, 350, 413
TaqI	TCGA	1 cut(s)	297
TatI	WGTACW	1 cut(s)	351
TauI	GCSGC	1 cut(s)	140
TfiI	GAWTC	4 cut(s)	10, 31, 481, 506
Tru1I	TTAA	1 cut(s)	488
Tru9I	TTAA	1 cut(s)	488
TseI	GCWGC	1 cut(s)	89
TspDTI	ATGAA	3 cut(s)	244, 321, 418
TspGWI	ACGGA	2 cut(s)	125, 474
TspMI	CCCGGG	1 cut(s)	132
XmaI	CCCGGG	1 cut(s)	132
XmnI	GAANNNNTTC	1 cut(s)	293
ZraI	GACGTC	1 cut(s)	411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.