RchiOBHm_Chr3g0462471

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0015749
Physical Location & Seq
Reverse (-)
10146599 .. 10147437
839 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 705 bp
ATGGCACATTCAAAGGCTGTCTCAACCCCAACTAAGAATACTACAAAGTCACTCAAAGTAAGGAAGTCAAAGTCGTCAAAGTCCAAGAAGGTATGTACATCTGCTGCAAGCGTGAGTAAAGGAAAGAATCGTGGAAAGAAGATAGAGGAGGATGAAGGAAGCACTGGAGGATTGAAGCTGCTCAAGCGTCACCCTGTTACAATGTCAAAGATGACCAAGGGTAGGGTTCTAAAGAAGAGGCTTAGAGTCCAGTTTGATAGGAATGGCTCTCCGGTGGGGAAAAATGCAGAAAAGATGCAATCCTACATTGGTGTTTTGGCAAGAACAAAGATCCCAATTTCAATTGCATCTTGGCCTGGTGTTGACAAGAAAAAGAAAAACACGCTTTGGGAGACTGTTTTGACGGCATTCATATTAGGACCTGAACACAGGAAAATGGTGTTACAATCTGCTGGAGCCAAATGGAGGGAATTTAAGAGCAGACTAACCACCGTCTATGTGTTGCCATATGTGGATGATCCGGAGATGTTACAATTTCCACCAGATGACTATAGGTTTATTACTGTTGATGAGTGGACTGCTTTTGTAACAGAAAGAACAAAGCCTGCATTTTTGGTAAGTTGCATGTTTGACATTATATATATTATACCTACATTTGTCAATGCCATTGTATACAGGAGCGCTATTCAACTAAATCAAATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48 Transposase_24

Protein Analysis

234

Amino Acids

26.43

Weight (kDa)

10.19

Isoelectric Point (pI)

34.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 672
AccIII TCCGGA 1 cut(s) 520
AclWI GGATC 2 cut(s) 325, 512
AcsI RAATTY 1 cut(s) 470
AfaI GTAC 1 cut(s) 97
AfeI AGCGCT 1 cut(s) 682
AfiI CCNNNNNNNGG 2 cut(s) 222, 465
AgsI TTSAA 4 cut(s) 12, 175, 342, 689
AjnI CCWGG 1 cut(s) 355
AluBI AGCT 1 cut(s) 178
AluI AGCT 1 cut(s) 178
Alw26I GTCTC 2 cut(s) 25, 386
AlwI GGATC 2 cut(s) 325, 512
Aor13HI TCCGGA 1 cut(s) 520
Aor51HI AGCGCT 1 cut(s) 682
AoxI GGCC 1 cut(s) 353
ApeKI GCWGC 2 cut(s) 104, 178
ApoI RAATTY 1 cut(s) 470
AspLEI GCGC 1 cut(s) 683
AspS9I GGNCC 1 cut(s) 419
AsuHPI GGTGA 1 cut(s) 182
AvaII GGWCC 1 cut(s) 419
BbvI GCAGC 2 cut(s) 91, 165
BceAI ACGGC 1 cut(s) 420
BciT130I CCWGG 1 cut(s) 357
BcoDI GTCTC 2 cut(s) 25, 386
BfmI CTRYAG 1 cut(s) 550
BfoI RGCGCY 1 cut(s) 684
BisI GCNGC 2 cut(s) 105, 179
BlsI GCNGC 2 cut(s) 106, 180
Bme1390I CCNGG 1 cut(s) 357
Bme18I GGWCC 1 cut(s) 419
BmgT120I GGNCC 1 cut(s) 419
BmiI GGNNCC 1 cut(s) 457
BmrFI CCNGG 1 cut(s) 357
BmsI GCATC 2 cut(s) 285, 356
BpmI CTGGAG 2 cut(s) 186, 474
BpuEI CTTGAG 1 cut(s) 167
BsaJI CCNNGG 1 cut(s) 216
BsaWI WCCGGW 2 cut(s) 271, 520
Bsc4I CCNNNNNNNGG 2 cut(s) 222, 465
Bse1I ACTGG 2 cut(s) 169, 250
BseAI TCCGGA 1 cut(s) 520
BseBI CCWGG 1 cut(s) 357
BseDI CCNNGG 1 cut(s) 216
BseGI GGATG 2 cut(s) 157, 520
BseLI CCNNNNNNNGG 2 cut(s) 222, 465
BseNI ACTGG 2 cut(s) 169, 250
BseRI GAGGAG 1 cut(s) 161
BseXI GCAGC 2 cut(s) 91, 165
BshFI GGCC 1 cut(s) 355
BsiSI CCGG 2 cut(s) 272, 521
BslI CCNNNNNNNGG 2 cut(s) 222, 465
BsmAI GTCTC 2 cut(s) 25, 386
BsmI GAATGC 1 cut(s) 407
BsnI GGCC 1 cut(s) 355
Bsp13I TCCGGA 1 cut(s) 520
Bsp1407I TGTACA 1 cut(s) 95
Bsp143I GATC 2 cut(s) 330, 517
BspANI GGCC 1 cut(s) 355
BspEI TCCGGA 1 cut(s) 520
BspLI GGNNCC 1 cut(s) 457
BspPI GGATC 2 cut(s) 325, 512
BsrGI TGTACA 1 cut(s) 95
BsrI ACTGG 2 cut(s) 169, 250
BssECI CCNNGG 1 cut(s) 216
BssMI GATC 2 cut(s) 330, 517
BssNAI GTATAC 1 cut(s) 673
BssT1I CCWWGG 1 cut(s) 216
Bst1107I GTATAC 1 cut(s) 673
Bst2UI CCWGG 1 cut(s) 357
Bst4CI ACNGT 3 cut(s) 397, 493, 565
Bst6I CTCTTC 1 cut(s) 230
BstAUI TGTACA 1 cut(s) 95
BstC8I GCNNGC 2 cut(s) 109, 606
BstDEI CTNAG 2 cut(s) 33, 242
BstF5I GGATG 2 cut(s) 157, 520
BstH2I RGCGCY 1 cut(s) 684
BstHHI GCGC 1 cut(s) 683
BstKTI GATC 2 cut(s) 333, 520
BstMAI GTCTC 2 cut(s) 25, 386
BstMBI GATC 2 cut(s) 330, 517
BstMWI GCNNNNNNNGC 1 cut(s) 184
BstNI CCWGG 1 cut(s) 357
BstNSI RCATGY 1 cut(s) 628
BstSCI CCNGG 1 cut(s) 355
BstSFI CTRYAG 1 cut(s) 550
BstV1I GCAGC 2 cut(s) 91, 165
BstX2I RGATCY 1 cut(s) 330
BstYI RGATCY 1 cut(s) 330
BstZ17I GTATAC 1 cut(s) 673
BsuRI GGCC 1 cut(s) 355
BtsCI GGATG 2 cut(s) 157, 520
BtsIMutI CAGTG 1 cut(s) 162
Cac8I GCNNGC 2 cut(s) 109, 606
CfoI GCGC 1 cut(s) 683
Cfr13I GGNCC 1 cut(s) 419
CseI GACGC 1 cut(s) 176
Csp6I GTAC 1 cut(s) 96
CviAII CATG 1 cut(s) 625
CviJI RGCY 7 cut(s) 17, 178, 241, 267, 355, 458, 604
CviKI_1 RGCY 7 cut(s) 17, 178, 241, 267, 355, 458, 604
CviQI GTAC 1 cut(s) 96
DdeI CTNAG 2 cut(s) 33, 242
DpnI GATC 2 cut(s) 332, 519
DpnII GATC 2 cut(s) 330, 517
Eam1104I CTCTTC 1 cut(s) 230
EarI CTCTTC 1 cut(s) 230
Eco130I CCWWGG 1 cut(s) 216
Eco47I GGWCC 1 cut(s) 419
Eco47III AGCGCT 1 cut(s) 682
EcoO109I RGGNCCY 1 cut(s) 419
EcoRII CCWGG 1 cut(s) 355
EcoT14I CCWWGG 1 cut(s) 216
ErhI CCWWGG 1 cut(s) 216
FaeI CATG 1 cut(s) 628
FatI CATG 1 cut(s) 624
FauNDI CATATG 1 cut(s) 508
FblI GTMKAC 1 cut(s) 672
Fnu4HI GCNGC 2 cut(s) 105, 179
FokI GGATG 2 cut(s) 164, 527
Fsp4HI GCNGC 2 cut(s) 105, 179
GlaI GCGC 1 cut(s) 682
GluI GCNGC 2 cut(s) 105, 179
GsuI CTGGAG 2 cut(s) 186, 474
HaeII RGCGCY 1 cut(s) 684
HaeIII GGCC 1 cut(s) 355
HapII CCGG 2 cut(s) 272, 521
HgaI GACGC 1 cut(s) 176
HhaI GCGC 1 cut(s) 683
Hin1II CATG 1 cut(s) 628
Hin6I GCGC 1 cut(s) 681
HinP1I GCGC 1 cut(s) 681
HincII GTYRAC 1 cut(s) 364
HindII GTYRAC 1 cut(s) 364
HinfI GANTC 2 cut(s) 127, 246
HpaII CCGG 2 cut(s) 272, 521
HphI GGTGA 1 cut(s) 182
Hpy166II GTNNAC 3 cut(s) 364, 576, 673
Hpy188III TCNNGA 1 cut(s) 521
Hpy8I GTNNAC 3 cut(s) 364, 576, 673
HpyAV CCTTC 2 cut(s) 82, 149
HpyCH4III ACNGT 3 cut(s) 397, 493, 565
HpyCH4V TGCA 6 cut(s) 107, 287, 298, 347, 608, 624
HpyF10VI GCNNNNNNNGC 1 cut(s) 184
HpyF3I CTNAG 2 cut(s) 33, 242
Hsp92II CATG 1 cut(s) 628
HspAI GCGC 1 cut(s) 681
Kpn2I TCCGGA 1 cut(s) 520
Kzo9I GATC 2 cut(s) 330, 517
LmnI GCTCC 2 cut(s) 455, 678
Lsp1109I GCAGC 2 cut(s) 91, 165
LweI GCATC 2 cut(s) 285, 356
MaeIII GTNAC 6 cut(s) 48, 188, 196, 441, 528, 586
MalI GATC 2 cut(s) 332, 519
MboI GATC 2 cut(s) 330, 517
MboII GAAGA 2 cut(s) 151, 247
MfeI CAATTG 1 cut(s) 342
MflI RGATCY 1 cut(s) 330
MluCI AATT 4 cut(s) 336, 342, 470, 533
MlyI GAGTC 1 cut(s) 255
MnlI CCTC 5 cut(s) 139, 142, 161, 231, 459
MroI TCCGGA 1 cut(s) 520
MseI TTAA 1 cut(s) 474
MspI CCGG 2 cut(s) 272, 521
MspR9I CCNGG 1 cut(s) 357
MunI CAATTG 1 cut(s) 342
Mva1269I GAATGC 1 cut(s) 407
MvaI CCWGG 1 cut(s) 357
MwoI GCNNNNNNNGC 1 cut(s) 184
NdeI CATATG 1 cut(s) 508
NdeII GATC 2 cut(s) 330, 517
NlaIII CATG 1 cut(s) 628
NlaIV GGNNCC 1 cut(s) 457
NmuCI GTSAC 2 cut(s) 48, 188
NspI RCATGY 1 cut(s) 628
PctI GAATGC 1 cut(s) 407
PfeI GAWTC 1 cut(s) 127
PkrI GCNGC 2 cut(s) 106, 180
PleI GAGTC 1 cut(s) 254
PpsI GAGTC 1 cut(s) 254
PpuMI RGGWCCY 1 cut(s) 419
Psp5II RGGWCCY 1 cut(s) 419
Psp6I CCWGG 1 cut(s) 355
PspGI CCWGG 1 cut(s) 355
PspN4I GGNNCC 1 cut(s) 457
PspPI GGNCC 1 cut(s) 419
PspPPI RGGWCCY 1 cut(s) 419
PsuI RGATCY 1 cut(s) 330
RsaI GTAC 1 cut(s) 97
RsaNI GTAC 1 cut(s) 96
SaqAI TTAA 1 cut(s) 474
SatI GCNGC 2 cut(s) 105, 179
Sau3AI GATC 2 cut(s) 330, 517
Sau96I GGNCC 1 cut(s) 419
SchI GAGTC 1 cut(s) 255
ScrFI CCNGG 1 cut(s) 357
SetI ASST 5 cut(s) 93, 180, 424, 557, 652
SfaNI GCATC 2 cut(s) 285, 356
SfcI CTRYAG 1 cut(s) 550
SinI GGWCC 1 cut(s) 419
SmlI CTYRAG 1 cut(s) 182
SmoI CTYRAG 1 cut(s) 182
Sse9I AATT 4 cut(s) 336, 342, 470, 533
StyD4I CCNGG 1 cut(s) 355
StyI CCWWGG 1 cut(s) 216
TaaI ACNGT 3 cut(s) 397, 493, 565
TasI AATT 4 cut(s) 336, 342, 470, 533
TatI WGTACW 1 cut(s) 95
TfiI GAWTC 1 cut(s) 127
Tru1I TTAA 1 cut(s) 474
Tru9I TTAA 1 cut(s) 474
TscAI CASTG 1 cut(s) 169
TseFI GTSAC 2 cut(s) 48, 188
TseI GCWGC 2 cut(s) 104, 178
Tsp45I GTSAC 2 cut(s) 48, 188
TspDTI ATGAA 2 cut(s) 168, 400
TspRI CASTG 1 cut(s) 169
VpaK11BI GGWCC 1 cut(s) 419
XapI RAATTY 1 cut(s) 470
XceI RCATGY 1 cut(s) 628
XmiI GTMKAC 1 cut(s) 672
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.