Rh3CG322400

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0015749
Physical Location & Seq
Reverse (-)
34759197 .. 34761352
2156 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG322400.1

Sequence Viewer

Length: 417 bp
ATGGCACATTCAAAGGCTGTCTTAACCCCAACTAAGAATACTTCAAAGTCACTCAAAGTAAGGAAGTCCAAGTCATCAAAGTCCAAGAAGGTATGTACATCTGCTGCAAGCGTGAGTAAAGGAAAGAATCGTGGAAAGAAGATAAAGGAGGATGAAGGAAGCACTGGAGGACTGAAGCTGCTCAAGTGTCACCCTATTACAATGTCAAAGATGACTAAGAGTAGGGTTCTAAAGAAGAGGCTTAGAGTCCAGTTTGATGGGAATGGCTCTCCGGTGGGGAAAAATGCAGAAAAGATGCAATCCTACATTGGTATTTTGGCAAGAACAAAGATCCCAATTTCAATTGCATCTTGGCCTAGTGTTGACAAGAAAAAGAAAAACACGCTTTGGGAGACTGTTTTGGTAAGTGTCGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48 Transposase_24

Protein Analysis

138

Amino Acids

15.1

Weight (kDa)

10.55

Isoelectric Point (pI)

27.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 325
AcuI CTGAAG 1 cut(s) 194
AfaI GTAC 1 cut(s) 97
AgsI TTSAA 3 cut(s) 12, 45, 342
AluBI AGCT 1 cut(s) 178
AluI AGCT 1 cut(s) 178
Alw26I GTCTC 1 cut(s) 386
AlwI GGATC 1 cut(s) 325
AoxI GGCC 1 cut(s) 353
ApeKI GCWGC 2 cut(s) 104, 178
AsuHPI GGTGA 1 cut(s) 182
BbvI GCAGC 2 cut(s) 91, 165
BccI CCATC 1 cut(s) 251
BcoDI GTCTC 1 cut(s) 386
BfaI CTAG 1 cut(s) 357
BisI GCNGC 2 cut(s) 105, 179
BlsI GCNGC 2 cut(s) 106, 180
BmsI GCATC 2 cut(s) 285, 356
BpmI CTGGAG 1 cut(s) 186
BpuEI CTTGAG 1 cut(s) 167
BsaWI WCCGGW 1 cut(s) 271
Bse1I ACTGG 2 cut(s) 169, 250
BseGI GGATG 1 cut(s) 157
BseNI ACTGG 2 cut(s) 169, 250
BseXI GCAGC 2 cut(s) 91, 165
BshFI GGCC 1 cut(s) 355
BsiSI CCGG 1 cut(s) 272
BsmAI GTCTC 1 cut(s) 386
BsnI GGCC 1 cut(s) 355
Bsp1407I TGTACA 1 cut(s) 95
Bsp143I GATC 1 cut(s) 330
BspANI GGCC 1 cut(s) 355
BspPI GGATC 1 cut(s) 325
BsrGI TGTACA 1 cut(s) 95
BsrI ACTGG 2 cut(s) 169, 250
BssMI GATC 1 cut(s) 330
Bst4CI ACNGT 1 cut(s) 397
Bst6I CTCTTC 1 cut(s) 230
BstAUI TGTACA 1 cut(s) 95
BstC8I GCNNGC 1 cut(s) 109
BstDEI CTNAG 3 cut(s) 33, 216, 242
BstF5I GGATG 1 cut(s) 157
BstKTI GATC 1 cut(s) 333
BstMAI GTCTC 1 cut(s) 386
BstMBI GATC 1 cut(s) 330
BstV1I GCAGC 2 cut(s) 91, 165
BstX2I RGATCY 1 cut(s) 330
BstXI CCANNNNNNTGG 1 cut(s) 257
BstYI RGATCY 1 cut(s) 330
BsuRI GGCC 1 cut(s) 355
BtsCI GGATG 1 cut(s) 157
BtsIMutI CAGTG 1 cut(s) 162
Cac8I GCNNGC 1 cut(s) 109
Csp6I GTAC 1 cut(s) 96
CviJI RGCY 5 cut(s) 17, 178, 241, 267, 355
CviKI_1 RGCY 5 cut(s) 17, 178, 241, 267, 355
CviQI GTAC 1 cut(s) 96
DdeI CTNAG 3 cut(s) 33, 216, 242
DpnI GATC 1 cut(s) 332
DpnII GATC 1 cut(s) 330
Eam1104I CTCTTC 1 cut(s) 230
EarI CTCTTC 1 cut(s) 230
Eco57I CTGAAG 1 cut(s) 194
FaiI YATR 1 cut(s) 94
FalI AAGNNNNNCTT 1 cut(s) 37
Fnu4HI GCNGC 2 cut(s) 105, 179
FokI GGATG 1 cut(s) 164
Fsp4HI GCNGC 2 cut(s) 105, 179
FspBI CTAG 1 cut(s) 357
GluI GCNGC 2 cut(s) 105, 179
GsuI CTGGAG 1 cut(s) 186
HaeIII GGCC 1 cut(s) 355
HapII CCGG 1 cut(s) 272
HincII GTYRAC 1 cut(s) 364
HindII GTYRAC 1 cut(s) 364
HinfI GANTC 2 cut(s) 127, 246
HpaII CCGG 1 cut(s) 272
HphI GGTGA 1 cut(s) 182
Hpy166II GTNNAC 1 cut(s) 364
Hpy8I GTNNAC 1 cut(s) 364
HpyAV CCTTC 2 cut(s) 82, 149
HpyCH4III ACNGT 1 cut(s) 397
HpyCH4V TGCA 4 cut(s) 107, 287, 298, 347
HpyF3I CTNAG 3 cut(s) 33, 216, 242
Kzo9I GATC 1 cut(s) 330
LpnPI CCDG 3 cut(s) 150, 263, 285
Lsp1109I GCAGC 2 cut(s) 91, 165
LweI GCATC 2 cut(s) 285, 356
MaeI CTAG 1 cut(s) 357
MaeIII GTNAC 2 cut(s) 48, 188
MalI GATC 1 cut(s) 332
MboI GATC 1 cut(s) 330
MboII GAAGA 2 cut(s) 151, 247
MfeI CAATTG 1 cut(s) 342
MflI RGATCY 1 cut(s) 330
MluCI AATT 2 cut(s) 336, 342
MlyI GAGTC 1 cut(s) 255
MnlI CCTC 3 cut(s) 142, 161, 231
MseI TTAA 1 cut(s) 23
MspI CCGG 1 cut(s) 272
MunI CAATTG 1 cut(s) 342
NdeII GATC 1 cut(s) 330
NmuCI GTSAC 2 cut(s) 48, 188
PfeI GAWTC 1 cut(s) 127
PkrI GCNGC 2 cut(s) 106, 180
PleI GAGTC 1 cut(s) 254
PpsI GAGTC 1 cut(s) 254
PsuI RGATCY 1 cut(s) 330
RsaI GTAC 1 cut(s) 97
RsaNI GTAC 1 cut(s) 96
SaqAI TTAA 1 cut(s) 23
SatI GCNGC 2 cut(s) 105, 179
Sau3AI GATC 1 cut(s) 330
SchI GAGTC 1 cut(s) 255
SetI ASST 2 cut(s) 93, 180
SfaNI GCATC 2 cut(s) 285, 356
SmlI CTYRAG 1 cut(s) 182
SmoI CTYRAG 1 cut(s) 182
Sse9I AATT 2 cut(s) 336, 342
SspMI CTAG 1 cut(s) 357
TaaI ACNGT 1 cut(s) 397
TaqI TCGA 1 cut(s) 411
TasI AATT 2 cut(s) 336, 342
TatI WGTACW 1 cut(s) 95
TfiI GAWTC 1 cut(s) 127
Tru1I TTAA 1 cut(s) 23
Tru9I TTAA 1 cut(s) 23
TscAI CASTG 1 cut(s) 169
TseFI GTSAC 2 cut(s) 48, 188
TseI GCWGC 2 cut(s) 104, 178
Tsp45I GTSAC 2 cut(s) 48, 188
TspDTI ATGAA 1 cut(s) 168
TspRI CASTG 1 cut(s) 169
XspI CTAG 1 cut(s) 357
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.