RchiOBHm_Chr5g0082411

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0015749
Physical Location & Seq
Forward (+)
88403270 .. 88409480
6211 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ35662

Sequence Viewer

Length: 720 bp
ATGAAGAATATTGTAATGGCACATTCAAAGGCTGTCTCAACCCCAACTAAGAATACTACAAAGTCACTCAAAGTAAGGAAGTCAAAGTCGTCAAAGTCCAAGAAGGTATGTACATCTGCTGCAAGCGTGAGTAAAGGAAAGAATCGTGGAAAGAAGATAGAGGAGGATGAAGGAAGCACAGGAGGATTGAAGCTGCTCAAGCGTCACCCTGTTACAATGTCAAAGATGACCAAGGGTAGGGTTCTAAAGAAGAGGCTTAGAGTCCAGTTTGATAGGAATGGCTCTCCGGTGGGGAAAAATGCAGAAAAGATGCAATCCTACATTGGTGTTTTGGCAAGAACAAAGTTCCCAATTTCAATTGCATCTTGGCCTGGTGTTGACAAGAAAAAGAAAAACACGCTTTGGGAGACTGTTTTGACGGCATTCATATTAGGACCTGAACACAGGAAAATGGTGTTACAATCTGCTGGAGCCAAATGGAGGGAATTTAAGAGCAGACTAACCACCGTCTATGTGTTGCCATATGTGGATGATCCGGAGATGTTACAATTTCCACCAGATGACTATAAGTTTATTACTGTTGATGAGTGGACTGCTTTTGTAACAGAAAGAACAAAGCCTGCATTTTTGGTAAGTTGCATGTTTGACATTATATATATTATACCTACATTTGTCAATGCCATTGTATACAGGAGCGCTAATCAACTAAATCAAATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48 Transposase_24

Protein Analysis

239

Amino Acids

27.02

Weight (kDa)

10.18

Isoelectric Point (pI)

36.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 687
AccIII TCCGGA 1 cut(s) 535
AclWI GGATC 1 cut(s) 527
AcsI RAATTY 1 cut(s) 485
AfaI GTAC 1 cut(s) 112
AfeI AGCGCT 1 cut(s) 697
AfiI CCNNNNNNNGG 2 cut(s) 237, 480
AgsI TTSAA 3 cut(s) 27, 190, 357
AjnI CCWGG 1 cut(s) 370
AluBI AGCT 1 cut(s) 193
AluI AGCT 1 cut(s) 193
Alw26I GTCTC 2 cut(s) 40, 401
AlwI GGATC 1 cut(s) 527
Aor13HI TCCGGA 1 cut(s) 535
Aor51HI AGCGCT 1 cut(s) 697
AoxI GGCC 1 cut(s) 368
ApeKI GCWGC 2 cut(s) 119, 193
ApoI RAATTY 1 cut(s) 485
AspLEI GCGC 1 cut(s) 698
AspS9I GGNCC 1 cut(s) 434
AsuHPI GGTGA 1 cut(s) 197
AvaII GGWCC 1 cut(s) 434
BbvI GCAGC 2 cut(s) 106, 180
BceAI ACGGC 1 cut(s) 435
BciT130I CCWGG 1 cut(s) 372
BcoDI GTCTC 2 cut(s) 40, 401
BfoI RGCGCY 1 cut(s) 699
BisI GCNGC 2 cut(s) 120, 194
BlsI GCNGC 2 cut(s) 121, 195
Bme1390I CCNGG 1 cut(s) 372
Bme18I GGWCC 1 cut(s) 434
BmgT120I GGNCC 1 cut(s) 434
BmiI GGNNCC 1 cut(s) 472
BmrFI CCNGG 1 cut(s) 372
BmsI GCATC 2 cut(s) 300, 371
BpmI CTGGAG 1 cut(s) 489
BpuEI CTTGAG 1 cut(s) 182
BsaJI CCNNGG 1 cut(s) 231
BsaWI WCCGGW 2 cut(s) 286, 535
Bsc4I CCNNNNNNNGG 2 cut(s) 237, 480
Bse1I ACTGG 1 cut(s) 265
BseAI TCCGGA 1 cut(s) 535
BseBI CCWGG 1 cut(s) 372
BseDI CCNNGG 1 cut(s) 231
BseGI GGATG 2 cut(s) 172, 535
BseLI CCNNNNNNNGG 2 cut(s) 237, 480
BseNI ACTGG 1 cut(s) 265
BseRI GAGGAG 1 cut(s) 176
BseXI GCAGC 2 cut(s) 106, 180
BshFI GGCC 1 cut(s) 370
BsiSI CCGG 2 cut(s) 287, 536
BslI CCNNNNNNNGG 2 cut(s) 237, 480
BsmAI GTCTC 2 cut(s) 40, 401
BsmI GAATGC 1 cut(s) 422
BsnI GGCC 1 cut(s) 370
Bsp13I TCCGGA 1 cut(s) 535
Bsp1407I TGTACA 1 cut(s) 110
Bsp143I GATC 1 cut(s) 532
BspANI GGCC 1 cut(s) 370
BspEI TCCGGA 1 cut(s) 535
BspLI GGNNCC 1 cut(s) 472
BspPI GGATC 1 cut(s) 527
BsrGI TGTACA 1 cut(s) 110
BsrI ACTGG 1 cut(s) 265
BssECI CCNNGG 1 cut(s) 231
BssMI GATC 1 cut(s) 532
BssNAI GTATAC 1 cut(s) 688
BssT1I CCWWGG 1 cut(s) 231
Bst1107I GTATAC 1 cut(s) 688
Bst2UI CCWGG 1 cut(s) 372
Bst4CI ACNGT 3 cut(s) 412, 508, 580
Bst6I CTCTTC 1 cut(s) 245
BstAUI TGTACA 1 cut(s) 110
BstC8I GCNNGC 2 cut(s) 124, 621
BstDEI CTNAG 2 cut(s) 48, 257
BstF5I GGATG 2 cut(s) 172, 535
BstH2I RGCGCY 1 cut(s) 699
BstHHI GCGC 1 cut(s) 698
BstKTI GATC 1 cut(s) 535
BstMAI GTCTC 2 cut(s) 40, 401
BstMBI GATC 1 cut(s) 532
BstMWI GCNNNNNNNGC 1 cut(s) 199
BstNI CCWGG 1 cut(s) 372
BstNSI RCATGY 1 cut(s) 643
BstSCI CCNGG 1 cut(s) 370
BstV1I GCAGC 2 cut(s) 106, 180
BstZ17I GTATAC 1 cut(s) 688
BsuRI GGCC 1 cut(s) 370
BtsCI GGATG 2 cut(s) 172, 535
Cac8I GCNNGC 2 cut(s) 124, 621
CfoI GCGC 1 cut(s) 698
Cfr13I GGNCC 1 cut(s) 434
CseI GACGC 1 cut(s) 191
Csp6I GTAC 1 cut(s) 111
CviAII CATG 1 cut(s) 640
CviJI RGCY 7 cut(s) 32, 193, 256, 282, 370, 473, 619
CviKI_1 RGCY 7 cut(s) 32, 193, 256, 282, 370, 473, 619
CviQI GTAC 1 cut(s) 111
DdeI CTNAG 2 cut(s) 48, 257
DpnI GATC 1 cut(s) 534
DpnII GATC 1 cut(s) 532
Eam1104I CTCTTC 1 cut(s) 245
EarI CTCTTC 1 cut(s) 245
Eco130I CCWWGG 1 cut(s) 231
Eco47I GGWCC 1 cut(s) 434
Eco47III AGCGCT 1 cut(s) 697
EcoO109I RGGNCCY 1 cut(s) 434
EcoRII CCWGG 1 cut(s) 370
EcoT14I CCWWGG 1 cut(s) 231
ErhI CCWWGG 1 cut(s) 231
FaeI CATG 1 cut(s) 643
FatI CATG 1 cut(s) 639
FauNDI CATATG 1 cut(s) 523
FblI GTMKAC 1 cut(s) 687
Fnu4HI GCNGC 2 cut(s) 120, 194
FokI GGATG 2 cut(s) 179, 542
Fsp4HI GCNGC 2 cut(s) 120, 194
GlaI GCGC 1 cut(s) 697
GluI GCNGC 2 cut(s) 120, 194
GsuI CTGGAG 1 cut(s) 489
HaeII RGCGCY 1 cut(s) 699
HaeIII GGCC 1 cut(s) 370
HapII CCGG 2 cut(s) 287, 536
HgaI GACGC 1 cut(s) 191
HhaI GCGC 1 cut(s) 698
Hin1II CATG 1 cut(s) 643
Hin6I GCGC 1 cut(s) 696
HinP1I GCGC 1 cut(s) 696
HincII GTYRAC 1 cut(s) 379
HindII GTYRAC 1 cut(s) 379
HinfI GANTC 2 cut(s) 142, 261
HpaII CCGG 2 cut(s) 287, 536
HphI GGTGA 1 cut(s) 197
Hpy166II GTNNAC 3 cut(s) 379, 591, 688
Hpy188III TCNNGA 1 cut(s) 536
Hpy8I GTNNAC 3 cut(s) 379, 591, 688
HpyAV CCTTC 2 cut(s) 97, 164
HpyCH4III ACNGT 3 cut(s) 412, 508, 580
HpyCH4V TGCA 6 cut(s) 122, 302, 313, 362, 623, 639
HpyF10VI GCNNNNNNNGC 1 cut(s) 199
HpyF3I CTNAG 2 cut(s) 48, 257
Hsp92II CATG 1 cut(s) 643
HspAI GCGC 1 cut(s) 696
Kpn2I TCCGGA 1 cut(s) 535
Kzo9I GATC 1 cut(s) 532
LmnI GCTCC 2 cut(s) 470, 693
Lsp1109I GCAGC 2 cut(s) 106, 180
LweI GCATC 2 cut(s) 300, 371
MaeIII GTNAC 6 cut(s) 63, 203, 211, 456, 543, 601
MalI GATC 1 cut(s) 534
MboI GATC 1 cut(s) 532
MboII GAAGA 3 cut(s) 16, 166, 262
MfeI CAATTG 1 cut(s) 357
MluCI AATT 4 cut(s) 351, 357, 485, 548
MlyI GAGTC 1 cut(s) 270
MnlI CCTC 5 cut(s) 154, 157, 176, 246, 474
MroI TCCGGA 1 cut(s) 535
MseI TTAA 1 cut(s) 489
MspI CCGG 2 cut(s) 287, 536
MspR9I CCNGG 1 cut(s) 372
MunI CAATTG 1 cut(s) 357
Mva1269I GAATGC 1 cut(s) 422
MvaI CCWGG 1 cut(s) 372
MwoI GCNNNNNNNGC 1 cut(s) 199
NdeI CATATG 1 cut(s) 523
NdeII GATC 1 cut(s) 532
NlaIII CATG 1 cut(s) 643
NlaIV GGNNCC 1 cut(s) 472
NmuCI GTSAC 2 cut(s) 63, 203
NspI RCATGY 1 cut(s) 643
PctI GAATGC 1 cut(s) 422
PfeI GAWTC 1 cut(s) 142
PkrI GCNGC 2 cut(s) 121, 195
PleI GAGTC 1 cut(s) 269
PpsI GAGTC 1 cut(s) 269
PpuMI RGGWCCY 1 cut(s) 434
Psp5II RGGWCCY 1 cut(s) 434
Psp6I CCWGG 1 cut(s) 370
PspGI CCWGG 1 cut(s) 370
PspN4I GGNNCC 1 cut(s) 472
PspPI GGNCC 1 cut(s) 434
PspPPI RGGWCCY 1 cut(s) 434
RsaI GTAC 1 cut(s) 112
RsaNI GTAC 1 cut(s) 111
SaqAI TTAA 1 cut(s) 489
SatI GCNGC 2 cut(s) 120, 194
Sau3AI GATC 1 cut(s) 532
Sau96I GGNCC 1 cut(s) 434
SchI GAGTC 1 cut(s) 270
ScrFI CCNGG 1 cut(s) 372
SetI ASST 4 cut(s) 108, 195, 439, 667
SfaNI GCATC 2 cut(s) 300, 371
SinI GGWCC 1 cut(s) 434
SmlI CTYRAG 1 cut(s) 197
SmoI CTYRAG 1 cut(s) 197
Sse9I AATT 4 cut(s) 351, 357, 485, 548
SspI AATATT 1 cut(s) 10
StyD4I CCNGG 1 cut(s) 370
StyI CCWWGG 1 cut(s) 231
TaaI ACNGT 3 cut(s) 412, 508, 580
TasI AATT 4 cut(s) 351, 357, 485, 548
TatI WGTACW 1 cut(s) 110
TfiI GAWTC 1 cut(s) 142
Tru1I TTAA 1 cut(s) 489
Tru9I TTAA 1 cut(s) 489
TseFI GTSAC 2 cut(s) 63, 203
TseI GCWGC 2 cut(s) 119, 193
Tsp45I GTSAC 2 cut(s) 63, 203
TspDTI ATGAA 3 cut(s) 17, 183, 415
VpaK11BI GGWCC 1 cut(s) 434
XapI RAATTY 1 cut(s) 485
XceI RCATGY 1 cut(s) 643
XmiI GTMKAC 1 cut(s) 687
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.