Rroxscaffold_3G00237620

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0015749
Physical Location & Seq
Forward (+)
25301711 .. 25304276
2566 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00237620.1

Sequence Viewer

Length: 399 bp
ATGGACAAATGGCACGATGTGAATGGTTGGAATAAGTCATCAAGTTCAAAAGCCAATAGGAAAACTCCACCTAAGCACGTGAACCCTAATGCTTTTAGGTTTTGGATTTCCAACACAACAAAAATGATGGAGGCAACCTCTAAGCATATAAAAGAAGATCAATCTAAGCGCAGGAAGAAGAAGACGCATGAGGAGGATGATAGATGTACTGGAGGGCTTAAGCTACTCAAGCGTCACCGCATTACAATGTCAAGGATGACAACGAGCATGATTCTAAAGAAGAGACTTATAGTCGACTTTGATAAGAATGGGGATCCAATAGGGAATAATGCAGATGCATTGCAATCCTACATCGGTGTTTTGGCAAGAACCAATATCCCAATTTCAATACCATCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4216 DUF4218 Transpos_assoc Transposase_21

Protein Analysis

132

Amino Acids

15.18

Weight (kDa)

10.29

Isoelectric Point (pI)

55.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 294
AciI CCGC 1 cut(s) 238
AclWI GGATC 2 cut(s) 308, 321
AcvI CACGTG 1 cut(s) 79
AdeI CACNNNGTG 1 cut(s) 19
AfaI GTAC 1 cut(s) 208
AflII CTTAAG 1 cut(s) 218
AgsI TTSAA 2 cut(s) 48, 387
AhdI GACNNNNNGTC 1 cut(s) 290
AluBI AGCT 1 cut(s) 223
AluI AGCT 1 cut(s) 223
Alw26I GTCTC 1 cut(s) 277
AlwI GGATC 2 cut(s) 308, 321
AspLEI GCGC 1 cut(s) 171
AsuHPI GGTGA 1 cut(s) 227
BamHI GGATCC 1 cut(s) 313
BbrPI CACGTG 1 cut(s) 79
BbsI GAAGAC 1 cut(s) 188
BccI CCATC 1 cut(s) 121
BcoDI GTCTC 1 cut(s) 277
BfrI CTTAAG 1 cut(s) 218
BmeRI GACNNNNNGTC 1 cut(s) 290
BmiI GGNNCC 1 cut(s) 315
BmsI GCATC 1 cut(s) 325
BpiI GAAGAC 1 cut(s) 188
BplI GAGNNNNNCTC 2 cut(s) 122, 154
BpmI CTGGAG 1 cut(s) 231
Bpu10I CCTNAGC 1 cut(s) 72
BpuEI CTTGAG 1 cut(s) 212
BsaAI YACGTR 1 cut(s) 79
Bse1I ACTGG 1 cut(s) 214
Bse3DI GCAATG 1 cut(s) 338
BseGI GGATG 2 cut(s) 202, 261
BseMI GCAATG 1 cut(s) 338
BseNI ACTGG 1 cut(s) 214
BseRI GAGGAG 1 cut(s) 206
BsmAI GTCTC 1 cut(s) 277
Bsp143I GATC 2 cut(s) 157, 313
BspACI CCGC 1 cut(s) 238
BspLI GGNNCC 1 cut(s) 315
BspPI GGATC 2 cut(s) 308, 321
BspTI CTTAAG 1 cut(s) 218
BsrDI GCAATG 1 cut(s) 338
BsrI ACTGG 1 cut(s) 214
BssMI GATC 2 cut(s) 157, 313
Bst6I CTCTTC 1 cut(s) 275
BstAFI CTTAAG 1 cut(s) 218
BstBAI YACGTR 1 cut(s) 79
BstDEI CTNAG 4 cut(s) 72, 141, 165, 396
BstF5I GGATG 2 cut(s) 202, 261
BstHHI GCGC 1 cut(s) 171
BstKTI GATC 2 cut(s) 160, 316
BstMAI GTCTC 1 cut(s) 277
BstMBI GATC 2 cut(s) 157, 313
BstMWI GCNNNNNNNGC 1 cut(s) 229
BstV2I GAAGAC 1 cut(s) 188
BstX2I RGATCY 1 cut(s) 313
BstYI RGATCY 1 cut(s) 313
BtsCI GGATG 2 cut(s) 202, 261
CfoI GCGC 1 cut(s) 171
CseI GACGC 2 cut(s) 193, 221
Csp6I GTAC 1 cut(s) 207
CviAII CATG 2 cut(s) 188, 268
CviJI RGCY 3 cut(s) 53, 217, 223
CviKI_1 RGCY 3 cut(s) 53, 217, 223
CviQI GTAC 1 cut(s) 207
DdeI CTNAG 4 cut(s) 72, 141, 165, 396
DpnI GATC 2 cut(s) 159, 315
DpnII GATC 2 cut(s) 157, 313
DraIII CACNNNGTG 1 cut(s) 19
DriI GACNNNNNGTC 1 cut(s) 290
Eam1104I CTCTTC 1 cut(s) 275
Eam1105I GACNNNNNGTC 1 cut(s) 290
EarI CTCTTC 1 cut(s) 275
Eco72I CACGTG 1 cut(s) 79
EcoT22I ATGCAT 1 cut(s) 340
FaeI CATG 2 cut(s) 191, 271
FaiI YATR 5 cut(s) 147, 149, 189, 269, 290
FatI CATG 2 cut(s) 187, 267
FblI GTMKAC 1 cut(s) 294
FokI GGATG 2 cut(s) 209, 268
GlaI GCGC 1 cut(s) 170
GsuI CTGGAG 1 cut(s) 231
HgaI GACGC 2 cut(s) 193, 221
HhaI GCGC 1 cut(s) 171
Hin1II CATG 2 cut(s) 191, 271
Hin6I GCGC 1 cut(s) 169
HinP1I GCGC 1 cut(s) 169
HincII GTYRAC 1 cut(s) 295
HindII GTYRAC 1 cut(s) 295
HinfI GANTC 1 cut(s) 271
HphI GGTGA 1 cut(s) 227
Hpy166II GTNNAC 2 cut(s) 82, 295
Hpy8I GTNNAC 2 cut(s) 82, 295
HpyCH4IV ACGT 1 cut(s) 78
HpyCH4V TGCA 3 cut(s) 332, 338, 343
HpyF10VI GCNNNNNNNGC 1 cut(s) 229
HpyF3I CTNAG 4 cut(s) 72, 141, 165, 396
HpySE526I ACGT 1 cut(s) 78
Hsp92II CATG 2 cut(s) 191, 271
HspAI GCGC 1 cut(s) 169
Kzo9I GATC 2 cut(s) 157, 313
LpnPI CCDG 2 cut(s) 157, 195
LweI GCATC 1 cut(s) 325
MaeII ACGT 1 cut(s) 78
MaeIII GTNAC 1 cut(s) 233
MalI GATC 2 cut(s) 159, 315
MboI GATC 2 cut(s) 157, 313
MboII GAAGA 5 cut(s) 167, 187, 190, 193, 292
MflI RGATCY 1 cut(s) 313
MluCI AATT 1 cut(s) 381
MmeI TCCRAC 2 cut(s) 8, 135
MnlI CCTC 5 cut(s) 124, 148, 184, 187, 206
Mph1103I ATGCAT 1 cut(s) 340
MseI TTAA 1 cut(s) 219
MslI CAYNNNNRTG 1 cut(s) 245
MspCI CTTAAG 1 cut(s) 218
MwoI GCNNNNNNNGC 1 cut(s) 229
NdeII GATC 2 cut(s) 157, 313
NlaIII CATG 2 cut(s) 191, 271
NlaIV GGNNCC 1 cut(s) 315
NmuCI GTSAC 1 cut(s) 233
NsiI ATGCAT 1 cut(s) 340
PfeI GAWTC 1 cut(s) 271
PmaCI CACGTG 1 cut(s) 79
PmlI CACGTG 1 cut(s) 79
Ppu21I YACGTR 1 cut(s) 79
PspCI CACGTG 1 cut(s) 79
PspN4I GGNNCC 1 cut(s) 315
PsuI RGATCY 1 cut(s) 313
RsaI GTAC 1 cut(s) 208
RsaNI GTAC 1 cut(s) 207
RseI CAYNNNNRTG 1 cut(s) 245
SalI GTCGAC 1 cut(s) 293
SaqAI TTAA 1 cut(s) 219
Sau3AI GATC 2 cut(s) 157, 313
SetI ASST 5 cut(s) 73, 81, 101, 140, 225
SfaNI GCATC 1 cut(s) 325
SmiMI CAYNNNNRTG 1 cut(s) 245
SmlI CTYRAG 2 cut(s) 218, 227
SmoI CTYRAG 2 cut(s) 218, 227
Sse9I AATT 1 cut(s) 381
SsiI CCGC 1 cut(s) 238
TaiI ACGT 1 cut(s) 81
TaqI TCGA 1 cut(s) 294
TasI AATT 1 cut(s) 381
TatI WGTACW 1 cut(s) 206
TfiI GAWTC 1 cut(s) 271
Tru1I TTAA 1 cut(s) 219
Tru9I TTAA 1 cut(s) 219
TseFI GTSAC 1 cut(s) 233
Tsp45I GTSAC 1 cut(s) 233
Vha464I CTTAAG 1 cut(s) 218
XmiI GTMKAC 1 cut(s) 294
Zsp2I ATGCAT 1 cut(s) 340
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.