Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0015749

Physical Location & Seq

Genomic Coordinates Forward (+)

74792768 .. 74797100

Gene Structure 4333 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00137060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGACTCGACCGACTCCATATATAGCTACCCCGACTCACTCCACGGCCCTAAACCTTAAATCCACTTCCTCCGAAGGCCCGACTGCGGTGCGAAGCTTTCGAAGCCCTAAGTTGGAGATTTGTCTTCGAATGCGATCCTCCTCTTGCTGTGATTCTCGGGCAAACAAGGAAGCGGTTGATGAATGTTCTGTTTTTGTTGGGAATCTTGGGGACACCATAATTGATCAGCAGCCCATTACCGATAGAATGCCATGTGTCGAGAGTCGGGAGGGAGAAATAGGTTACATAAGAGTAGCCAATGAGGGGATTCTGGTAATGGCACATTCAAAGGCTGTCTCAACCCCAACTAAGAATACTACAAAGTCACTCAAAGTAAGGAAGTCAAAGTCGTCAAAGTCCAAGAAGGTATGTACATCCGCTGCAAGTGTGAGTAAAGGAAAGAATCGTGGAAAGAAGATAGAGGAGGATGAAGGAAGCAACTGGAGGATTGAAGCTGCTCAAGCGTCACCTGTTACAATGTCAAAGATCACCAAGGGTAGGGTTCTAAAGAAGAGGCTTAGAGTCCAGTTTGATGGGAATGGCTCTCCGGTGGGGAAAAATGCAGAAAAGTTGCAATCCTACATTGGTGTTTTGGCAAGAACAAAGATCCCAATTTCAATTGCATCTTGGCCTGGTGTTGACAAGAAAAAGAAAAACACGCTTTGGGAGACTGTTTTGGTAAGTGTCGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C48 Transposase_24

Protein Analysis

243

Amino Acids

26.5

Weight (kDa)

9.91

Isoelectric Point (pI)

44.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015749)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0462471 RchiOBHm_Chr5g0082411
rosa_multiflora	Rmu_co8410823.1_g000001 Rmu_sc0002187.1_g000065
rosa_roxburghii	Rroxscaffold_2G00137060 Rroxscaffold_3G00237620
rosa_rugosa	Rorug02G0315000 Rorug02G0372100 Rorug06G0055000
rosa_samantha	Rh2AG032600 Rh2AG032700 Rh2DG032300 Rh3CG322400 Rh3DG222000 Rh5AG164400 Rh7BG436300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	86, 173, 417
AclWI	GGATC	2 cut(s)	129, 640
AfaI	GTAC	1 cut(s)	412
AfiI	CCNNNNNNNGG	4 cut(s)	85, 112, 303, 537
AgsI	TTSAA	3 cut(s)	327, 491, 657
AjnI	CCWGG	1 cut(s)	670
AluBI	AGCT	3 cut(s)	26, 96, 494
AluI	AGCT	3 cut(s)	26, 96, 494
Alw26I	GTCTC	2 cut(s)	340, 701
AlwI	GGATC	2 cut(s)	129, 640
Ama87I	CYCGRG	1 cut(s)	156
AoxI	GGCC	3 cut(s)	45, 76, 668
ApeKI	GCWGC	3 cut(s)	229, 419, 494
AspS9I	GGNCC	2 cut(s)	46, 77
AsuHPI	GGTGA	2 cut(s)	498, 520
AsuII	TTCGAA	2 cut(s)	100, 127
AvaI	CYCGRG	1 cut(s)	156
BbsI	GAAGAC	1 cut(s)	116
BbvI	GCAGC	3 cut(s)	241, 406, 481
BccI	CCATC	1 cut(s)	566
BceAI	ACGGC	1 cut(s)	60
BcgI	CGANNNNNNTGC	2 cut(s)	70, 104
BciT130I	CCWGG	1 cut(s)	672
BclI	TGATCA	1 cut(s)	223
BcoDI	GTCTC	2 cut(s)	340, 701
BisI	GCNGC	3 cut(s)	230, 420, 495
BlsI	GCNGC	3 cut(s)	231, 421, 496
Bme1390I	CCNGG	1 cut(s)	672
BmeT110I	CYCGRG	1 cut(s)	156
BmgT120I	GGNCC	2 cut(s)	46, 77
BmrFI	CCNGG	1 cut(s)	672
BmsI	GCATC	1 cut(s)	671
BpiI	GAAGAC	1 cut(s)	116
BpmI	CTGGAG	1 cut(s)	502
Bpu14I	TTCGAA	2 cut(s)	100, 127
BpuEI	CTTGAG	1 cut(s)	483
BsaJI	CCNNGG	2 cut(s)	42, 531
BsaWI	WCCGGW	1 cut(s)	586
Bsc4I	CCNNNNNNNGG	4 cut(s)	85, 112, 303, 537
Bse1I	ACTGG	2 cut(s)	485, 565
BseBI	CCWGG	1 cut(s)	672
BseDI	CCNNGG	2 cut(s)	42, 531
BseGI	GGATG	2 cut(s)	413, 472
BseLI	CCNNNNNNNGG	4 cut(s)	85, 112, 303, 537
BseNI	ACTGG	2 cut(s)	485, 565
BseRI	GAGGAG	2 cut(s)	130, 476
BseXI	GCAGC	3 cut(s)	241, 406, 481
Bsh1285I	CGRYCG	1 cut(s)	11
BshFI	GGCC	3 cut(s)	47, 78, 670
BsiEI	CGRYCG	1 cut(s)	11
BsiHKCI	CYCGRG	1 cut(s)	156
BsiSI	CCGG	1 cut(s)	587
BslFI	GGGAC	1 cut(s)	224
BslI	CCNNNNNNNGG	4 cut(s)	85, 112, 303, 537
BsmAI	GTCTC	2 cut(s)	340, 701
BsmFI	GGGAC	1 cut(s)	224
BsmI	GAATGC	2 cut(s)	135, 252
BsnI	GGCC	3 cut(s)	47, 78, 670
BsoBI	CYCGRG	1 cut(s)	156
Bsp119I	TTCGAA	2 cut(s)	100, 127
Bsp1407I	TGTACA	1 cut(s)	410
Bsp143I	GATC	4 cut(s)	134, 223, 525, 645
BspACI	CCGC	3 cut(s)	86, 173, 417
BspANI	GGCC	3 cut(s)	47, 78, 670
BspPI	GGATC	2 cut(s)	129, 640
BspT104I	TTCGAA	2 cut(s)	100, 127
BsrGI	TGTACA	1 cut(s)	410
BsrI	ACTGG	2 cut(s)	485, 565
BssECI	CCNNGG	2 cut(s)	42, 531
BssMI	GATC	4 cut(s)	134, 223, 525, 645
BssT1I	CCWWGG	1 cut(s)	531
Bst2UI	CCWGG	1 cut(s)	672
Bst4CI	ACNGT	1 cut(s)	712
Bst6I	CTCTTC	1 cut(s)	545
BstAUI	TGTACA	1 cut(s)	410
BstBI	TTCGAA	2 cut(s)	100, 127
BstDEI	CTNAG	3 cut(s)	108, 348, 557
BstDSI	CCRYGG	1 cut(s)	42
BstF5I	GGATG	2 cut(s)	413, 472
BstKTI	GATC	4 cut(s)	137, 226, 528, 648
BstMAI	GTCTC	2 cut(s)	340, 701
BstMBI	GATC	4 cut(s)	134, 223, 525, 645
BstMCI	CGRYCG	1 cut(s)	11
BstMWI	GCNNNNNNNGC	2 cut(s)	102, 500
BstNI	CCWGG	1 cut(s)	672
BstSCI	CCNGG	1 cut(s)	670
BstV1I	GCAGC	3 cut(s)	241, 406, 481
BstV2I	GAAGAC	1 cut(s)	116
BstX2I	RGATCY	1 cut(s)	645
BstXI	CCANNNNNNTGG	1 cut(s)	572
BstYI	RGATCY	1 cut(s)	645
BsuRI	GGCC	3 cut(s)	47, 78, 670
BtgI	CCRYGG	1 cut(s)	42
BtsCI	GGATG	2 cut(s)	413, 472
Cfr13I	GGNCC	2 cut(s)	46, 77
CseI	GACGC	1 cut(s)	492
Csp6I	GTAC	1 cut(s)	411
CviAII	CATG	1 cut(s)	252
CviQI	GTAC	1 cut(s)	411
DdeI	CTNAG	3 cut(s)	108, 348, 557
DpnI	GATC	4 cut(s)	136, 225, 527, 647
DpnII	GATC	4 cut(s)	134, 223, 525, 645
Eam1104I	CTCTTC	1 cut(s)	545
EarI	CTCTTC	1 cut(s)	545
Eco130I	CCWWGG	1 cut(s)	531
Eco88I	CYCGRG	1 cut(s)	156
EcoRII	CCWGG	1 cut(s)	670
EcoT14I	CCWWGG	1 cut(s)	531
ErhI	CCWWGG	1 cut(s)	531
FaeI	CATG	1 cut(s)	255
FaiI	YATR	7 cut(s)	19, 21, 23, 218, 253, 287, 409
FaqI	GGGAC	1 cut(s)	224
FatI	CATG	1 cut(s)	251
FbaI	TGATCA	1 cut(s)	223
Fnu4HI	GCNGC	3 cut(s)	230, 420, 495
FokI	GGATG	2 cut(s)	400, 479
Fsp4HI	GCNGC	3 cut(s)	230, 420, 495
GluI	GCNGC	3 cut(s)	230, 420, 495
GsuI	CTGGAG	1 cut(s)	502
HaeIII	GGCC	3 cut(s)	47, 78, 670
HapII	CCGG	1 cut(s)	587
HgaI	GACGC	1 cut(s)	492
Hin1II	CATG	1 cut(s)	255
HincII	GTYRAC	1 cut(s)	679
HindII	GTYRAC	1 cut(s)	679
HindIII	AAGCTT	1 cut(s)	94
HinfI	GANTC	9 cut(s)	4, 13, 34, 152, 202, 262, 307, 442, 561
HpaII	CCGG	1 cut(s)	587
HphI	GGTGA	2 cut(s)	498, 520
Hpy166II	GTNNAC	1 cut(s)	679
Hpy188I	TCNGA	1 cut(s)	73
Hpy188III	TCNNGA	2 cut(s)	259, 266
Hpy8I	GTNNAC	1 cut(s)	679
HpyAV	CCTTC	3 cut(s)	68, 397, 464
HpyCH4III	ACNGT	1 cut(s)	712
HpyCH4V	TGCA	4 cut(s)	422, 602, 613, 662
HpyF10VI	GCNNNNNNNGC	2 cut(s)	102, 500
HpyF3I	CTNAG	3 cut(s)	108, 348, 557
Hsp92II	CATG	1 cut(s)	255
Ksp22I	TGATCA	1 cut(s)	223
Kzo9I	GATC	4 cut(s)	134, 223, 525, 645
LpnPI	CCDG	7 cut(s)	296, 466, 522, 578, 600, 657, 684
Lsp1109I	GCAGC	3 cut(s)	241, 406, 481
LweI	GCATC	1 cut(s)	671
MaeIII	GTNAC	4 cut(s)	281, 363, 504, 511
MalI	GATC	4 cut(s)	136, 225, 527, 647
MboI	GATC	4 cut(s)	134, 223, 525, 645
MboII	GAAGA	3 cut(s)	116, 466, 562
MfeI	CAATTG	1 cut(s)	657
MflI	RGATCY	1 cut(s)	645
MluCI	AATT	3 cut(s)	219, 651, 657
MlyI	GAGTC	4 cut(s)	7, 28, 271, 570
MmeI	TCCRAC	1 cut(s)	93
MnlI	CCTC	9 cut(s)	79, 148, 151, 262, 295, 454, 457, 477, 546
MseI	TTAA	1 cut(s)	57
MspA1I	CMGCKG	1 cut(s)	419
MspI	CCGG	1 cut(s)	587
MspR9I	CCNGG	1 cut(s)	672
MunI	CAATTG	1 cut(s)	657
Mva1269I	GAATGC	2 cut(s)	135, 252
MvaI	CCWGG	1 cut(s)	672
MwoI	GCNNNNNNNGC	2 cut(s)	102, 500
NdeII	GATC	4 cut(s)	134, 223, 525, 645
NlaIII	CATG	1 cut(s)	255
NmuCI	GTSAC	2 cut(s)	363, 504
NspV	TTCGAA	2 cut(s)	100, 127
PctI	GAATGC	2 cut(s)	135, 252
PfeI	GAWTC	4 cut(s)	152, 202, 307, 442
PkrI	GCNGC	3 cut(s)	231, 421, 496
PleI	GAGTC	4 cut(s)	7, 28, 270, 569
PpsI	GAGTC	4 cut(s)	7, 28, 270, 569
Psp6I	CCWGG	1 cut(s)	670
PspGI	CCWGG	1 cut(s)	670
PspPI	GGNCC	2 cut(s)	46, 77
PsuI	RGATCY	1 cut(s)	645
RsaI	GTAC	1 cut(s)	412
RsaNI	GTAC	1 cut(s)	411
SaqAI	TTAA	1 cut(s)	57
SatI	GCNGC	3 cut(s)	230, 420, 495
Sau3AI	GATC	4 cut(s)	134, 223, 525, 645
Sau96I	GGNCC	2 cut(s)	46, 77
SchI	GAGTC	4 cut(s)	7, 28, 271, 570
ScrFI	CCNGG	1 cut(s)	672
SetI	ASST	7 cut(s)	28, 57, 98, 283, 408, 496, 511
SfaNI	GCATC	1 cut(s)	671
SfuI	TTCGAA	2 cut(s)	100, 127
SmlI	CTYRAG	1 cut(s)	498
SmoI	CTYRAG	1 cut(s)	498
Sse9I	AATT	3 cut(s)	219, 651, 657
SsiI	CCGC	3 cut(s)	86, 173, 417
StyD4I	CCNGG	1 cut(s)	670
StyI	CCWWGG	1 cut(s)	531
TaaI	ACNGT	1 cut(s)	712
TaqI	TCGA	5 cut(s)	7, 100, 127, 258, 726
TaqII	GACCGA	1 cut(s)	25
TasI	AATT	3 cut(s)	219, 651, 657
TatI	WGTACW	1 cut(s)	410
TfiI	GAWTC	4 cut(s)	152, 202, 307, 442
Tru1I	TTAA	1 cut(s)	57
Tru9I	TTAA	1 cut(s)	57
TseFI	GTSAC	2 cut(s)	363, 504
TseI	GCWGC	3 cut(s)	229, 419, 494
Tsp45I	GTSAC	2 cut(s)	363, 504
TspDTI	ATGAA	2 cut(s)	195, 483

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.