Rmu_co8410823.1_g000001

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8410823.1
OG0015749
Physical Location & Seq
Reverse (-)
167 .. 863
697 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8410823.1_g000001.1.cds

Sequence Viewer

Length: 594 bp
atggtgcattcaaaggctgtctcaacaccaacaaagaagagttcaaagtcgcacaaagtacggaagtcgaagtcttcaaagaccaaggataaggactctgtttcaaattctgctgcaagtgtgagtaaaagaaaaaaacatgggaagaggaagacagaatctgaggtagatgatggatgtactggagggctgaagttgctcaaacgtcaccgcattacaatgtccaaggtgacaaccggcaaggttctgaaaaagagacttgtagttgagtttgataagaatggggatccaatagggaaaaatgcagacaagttgcaatcctacattggtgttttggaaagaaccaatatcccaatttctatagcatcttggcctggtgtatccaagaggaaaaaaaccaatctttgggagactgttttgacgtccttcgtattgggacccgaatgcaagaagatggtgttaaaatctgctggaaccaaatggagggaatttaagtcaagactcacaacattgtatgtaattccatatttagataatcctgaatctttaaagtttcccccagatgactataggtttataagtgttgatgcctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_C48 Transposase_24

Protein Analysis

197

Amino Acids

22.07

Weight (kDa)

10.16

Isoelectric Point (pI)

32.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 578
AatII GACGTC 1 cut(s) 425
AccB7I CCANNNNNTGG 1 cut(s) 405
AciI CCGC 1 cut(s) 211
AclWI GGATC 2 cut(s) 281, 294
AcsI RAATTY 2 cut(s) 106, 488
AcuI CTGAAG 1 cut(s) 212
AcyI GRCGYC 1 cut(s) 422
AfaI GTAC 2 cut(s) 60, 181
AfiI CCNNNNNNNGG 2 cut(s) 405, 483
AgsI TTSAA 4 cut(s) 12, 45, 78, 105
AjnI CCWGG 1 cut(s) 373
Alw26I GTCTC 3 cut(s) 25, 250, 404
AlwI GGATC 2 cut(s) 281, 294
AlwNI CAGNNNCTG 1 cut(s) 161
AoxI GGCC 1 cut(s) 371
ApeKI GCWGC 1 cut(s) 113
ApoI RAATTY 2 cut(s) 106, 488
AspS9I GGNCC 1 cut(s) 437
AsuHPI GGTGA 2 cut(s) 200, 241
AvaII GGWCC 1 cut(s) 437
BamHI GGATCC 1 cut(s) 286
BbsI GAAGAC 2 cut(s) 66, 158
BbvI GCAGC 1 cut(s) 100
BccI CCATC 2 cut(s) 167, 448
BciT130I CCWGG 1 cut(s) 375
BciVI GTATCC 1 cut(s) 391
BcoDI GTCTC 3 cut(s) 25, 250, 404
BfaI CTAG 1 cut(s) 592
BfmI CTRYAG 2 cut(s) 360, 568
BfuI GTATCC 1 cut(s) 391
BisI GCNGC 1 cut(s) 114
BlsI GCNGC 1 cut(s) 115
Bme1390I CCNGG 1 cut(s) 375
Bme18I GGWCC 1 cut(s) 437
BmgT120I GGNCC 1 cut(s) 437
BmiI GGNNCC 4 cut(s) 288, 438, 439, 475
BmrFI CCNGG 1 cut(s) 375
BmsI GCATC 2 cut(s) 374, 577
BpiI GAAGAC 2 cut(s) 66, 158
BpmI CTGGAG 1 cut(s) 204
BsaHI GRCGYC 1 cut(s) 422
BsaJI CCNNGG 2 cut(s) 84, 225
Bsc4I CCNNNNNNNGG 2 cut(s) 405, 483
Bse118I RCCGGY 1 cut(s) 236
Bse1I ACTGG 1 cut(s) 187
BseBI CCWGG 1 cut(s) 375
BseDI CCNNGG 2 cut(s) 84, 225
BseGI GGATG 1 cut(s) 182
BseLI CCNNNNNNNGG 2 cut(s) 405, 483
BseMII CTCAG 1 cut(s) 153
BseNI ACTGG 1 cut(s) 187
BseXI GCAGC 1 cut(s) 100
BshFI GGCC 1 cut(s) 373
BsiSI CCGG 1 cut(s) 237
BslFI GGGAC 1 cut(s) 450
BslI CCNNNNNNNGG 2 cut(s) 405, 483
BsmAI GTCTC 3 cut(s) 25, 250, 404
BsmFI GGGAC 1 cut(s) 450
BsmI GAATGC 2 cut(s) 7, 449
BsnI GGCC 1 cut(s) 373
Bsp143I GATC 1 cut(s) 286
BspACI CCGC 1 cut(s) 211
BspANI GGCC 1 cut(s) 373
BspCNI CTCAG 1 cut(s) 154
BspLI GGNNCC 4 cut(s) 288, 438, 439, 475
BspPI GGATC 2 cut(s) 281, 294
BsrFI RCCGGY 1 cut(s) 236
BsrI ACTGG 1 cut(s) 187
BssAI RCCGGY 1 cut(s) 236
BssECI CCNNGG 2 cut(s) 84, 225
BssMI GATC 1 cut(s) 286
BssNI GRCGYC 1 cut(s) 422
BssT1I CCWWGG 2 cut(s) 84, 225
Bst2UI CCWGG 1 cut(s) 375
Bst4CI ACNGT 1 cut(s) 415
Bst6I CTCTTC 2 cut(s) 32, 140
BstACI GRCGYC 1 cut(s) 422
BstDEI CTNAG 1 cut(s) 162
BstF5I GGATG 1 cut(s) 182
BstKTI GATC 1 cut(s) 289
BstMAI GTCTC 3 cut(s) 25, 250, 404
BstMBI GATC 1 cut(s) 286
BstMWI GCNNNNNNNGC 1 cut(s) 196
BstNI CCWGG 1 cut(s) 375
BstSCI CCNGG 1 cut(s) 373
BstSFI CTRYAG 2 cut(s) 360, 568
BstV1I GCAGC 1 cut(s) 100
BstV2I GAAGAC 2 cut(s) 66, 158
BstX2I RGATCY 1 cut(s) 286
BstYI RGATCY 1 cut(s) 286
BsuI GTATCC 1 cut(s) 391
BsuRI GGCC 1 cut(s) 373
BtsCI GGATG 1 cut(s) 182
CaiI CAGNNNCTG 1 cut(s) 161
Cfr10I RCCGGY 1 cut(s) 236
Cfr13I GGNCC 1 cut(s) 437
Csp6I GTAC 2 cut(s) 59, 180
CviAII CATG 1 cut(s) 140
CviJI RGCY 3 cut(s) 17, 190, 373
CviKI_1 RGCY 3 cut(s) 17, 190, 373
CviQI GTAC 2 cut(s) 59, 180
DdeI CTNAG 1 cut(s) 162
DpnI GATC 1 cut(s) 288
DpnII GATC 1 cut(s) 286
DraI TTTAAA 1 cut(s) 549
Eam1104I CTCTTC 2 cut(s) 32, 140
EarI CTCTTC 2 cut(s) 32, 140
Eco130I CCWWGG 2 cut(s) 84, 225
Eco47I GGWCC 1 cut(s) 437
Eco57I CTGAAG 1 cut(s) 212
EcoO109I RGGNCCY 1 cut(s) 437
EcoRII CCWGG 1 cut(s) 373
EcoT14I CCWWGG 2 cut(s) 84, 225
ErhI CCWWGG 2 cut(s) 84, 225
FaeI CATG 1 cut(s) 143
FaiI YATR 6 cut(s) 141, 362, 516, 526, 570, 578
FaqI GGGAC 1 cut(s) 450
FatI CATG 1 cut(s) 139
Fnu4HI GCNGC 1 cut(s) 114
FokI GGATG 1 cut(s) 189
Fsp4HI GCNGC 1 cut(s) 114
FspBI CTAG 1 cut(s) 592
GluI GCNGC 1 cut(s) 114
GsuI CTGGAG 1 cut(s) 204
HaeIII GGCC 1 cut(s) 373
HapII CCGG 1 cut(s) 237
Hin1I GRCGYC 1 cut(s) 422
Hin1II CATG 1 cut(s) 143
HinfI GANTC 4 cut(s) 95, 158, 501, 542
HpaII CCGG 1 cut(s) 237
HphI GGTGA 2 cut(s) 200, 241
Hpy188I TCNGA 2 cut(s) 163, 249
Hpy188III TCNNGA 2 cut(s) 498, 539
HpyAV CCTTC 1 cut(s) 436
HpyCH4III ACNGT 1 cut(s) 415
HpyCH4IV ACGT 2 cut(s) 205, 422
HpyCH4V TGCA 5 cut(s) 7, 116, 305, 316, 447
HpyF10VI GCNNNNNNNGC 1 cut(s) 196
HpyF3I CTNAG 1 cut(s) 162
HpySE526I ACGT 2 cut(s) 205, 422
Hsp92I GRCGYC 1 cut(s) 422
Hsp92II CATG 1 cut(s) 143
KflI GGGWCCC 1 cut(s) 437
Kzo9I GATC 1 cut(s) 286
LpnPI CCDG 7 cut(s) 168, 250, 360, 387, 456, 552, 573
Lsp1109I GCAGC 1 cut(s) 100
LweI GCATC 2 cut(s) 374, 577
MaeI CTAG 1 cut(s) 592
MaeII ACGT 2 cut(s) 205, 422
MaeIII GTNAC 2 cut(s) 206, 229
MalI GATC 1 cut(s) 288
MboI GATC 1 cut(s) 286
MboII GAAGA 5 cut(s) 49, 66, 157, 163, 463
MflI RGATCY 1 cut(s) 286
MluCI AATT 4 cut(s) 106, 354, 488, 519
MlyI GAGTC 2 cut(s) 89, 495
MnlI CCTC 5 cut(s) 141, 157, 179, 381, 477
MseI TTAA 3 cut(s) 461, 492, 548
MslI CAYNNNNRTG 1 cut(s) 218
MspI CCGG 1 cut(s) 237
MspR9I CCNGG 1 cut(s) 375
Mva1269I GAATGC 2 cut(s) 7, 449
MvaI CCWGG 1 cut(s) 375
MwoI GCNNNNNNNGC 1 cut(s) 196
NdeII GATC 1 cut(s) 286
NlaIII CATG 1 cut(s) 143
NlaIV GGNNCC 4 cut(s) 288, 438, 439, 475
NmuCI GTSAC 2 cut(s) 206, 229
PctI GAATGC 2 cut(s) 7, 449
PfeI GAWTC 2 cut(s) 158, 542
PflMI CCANNNNNTGG 1 cut(s) 405
PkrI GCNGC 1 cut(s) 115
PleI GAGTC 2 cut(s) 89, 495
PpsI GAGTC 2 cut(s) 89, 495
PpuMI RGGWCCY 1 cut(s) 437
PsiI TTATAA 1 cut(s) 578
Psp5II RGGWCCY 1 cut(s) 437
Psp6I CCWGG 1 cut(s) 373
PspGI CCWGG 1 cut(s) 373
PspN4I GGNNCC 4 cut(s) 288, 438, 439, 475
PspPI GGNCC 1 cut(s) 437
PspPPI RGGWCCY 1 cut(s) 437
PstNI CAGNNNCTG 1 cut(s) 161
PsuI RGATCY 1 cut(s) 286
RsaI GTAC 2 cut(s) 60, 181
RsaNI GTAC 2 cut(s) 59, 180
RseI CAYNNNNRTG 1 cut(s) 218
SaqAI TTAA 3 cut(s) 461, 492, 548
SatI GCNGC 1 cut(s) 114
Sau3AI GATC 1 cut(s) 286
Sau96I GGNCC 1 cut(s) 437
SchI GAGTC 2 cut(s) 89, 495
ScrFI CCNGG 1 cut(s) 375
SetI ASST 6 cut(s) 168, 208, 231, 246, 425, 575
SfaNI GCATC 2 cut(s) 374, 577
SfcI CTRYAG 2 cut(s) 360, 568
SinI GGWCC 1 cut(s) 437
SmiMI CAYNNNNRTG 1 cut(s) 218
Sse9I AATT 4 cut(s) 106, 354, 488, 519
SsiI CCGC 1 cut(s) 211
SspMI CTAG 1 cut(s) 592
StyD4I CCNGG 1 cut(s) 373
StyI CCWWGG 2 cut(s) 84, 225
TaaI ACNGT 1 cut(s) 415
TaiI ACGT 2 cut(s) 208, 425
TaqI TCGA 1 cut(s) 68
TasI AATT 4 cut(s) 106, 354, 488, 519
TatI WGTACW 1 cut(s) 179
TfiI GAWTC 2 cut(s) 158, 542
Tru1I TTAA 3 cut(s) 461, 492, 548
Tru9I TTAA 3 cut(s) 461, 492, 548
TseFI GTSAC 2 cut(s) 206, 229
TseI GCWGC 1 cut(s) 113
Tsp45I GTSAC 2 cut(s) 206, 229
TspGWI ACGGA 1 cut(s) 76
Van91I CCANNNNNTGG 1 cut(s) 405
VpaK11BI GGWCC 1 cut(s) 437
XapI RAATTY 2 cut(s) 106, 488
XspI CTAG 1 cut(s) 592
ZraI GACGTC 1 cut(s) 423
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.