Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0015749

Physical Location & Seq

Genomic Coordinates Reverse (-)

50072542 .. 50072976

Gene Structure 435 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG436300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGGTGCATTCAAAGGCTGTCTCAAATCCAACAAAGAAGACTTCAAAAACACATAAAGTAAGGAAGTCGAAGTCTTCAAAGACCAAGGATAGGGAATCTGTTTCAAATAATTCTGCTGCAAGTGTGAGTAAATCAAAGAAGCGCGGGAAGAAGAAGACGCAGGAGGAGGATGATGGATGTACTGGAGGGCTTAAGTTGCTCAAGCGTCACCGCGTTACAATGTCAAGGATGACAACGAGCAGGATTCTAAAGAAGAGACTTATAGTCGAGTTTGATAAGAATGGGGATCCAATAGGGAATAATGCAGATGCATTGCAATCCTACATCGGTGTTTTGGCAAGGACTAATATCCCAATTTCAATAGTATCTTGGCCTAAAGTATCGAAGACAAAAAAAAGCAATCTTTGGGAGACCGTTCTGGTAAGGGTTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C48 Transposase_24

Protein Analysis

144

Amino Acids

16.05

Weight (kDa)

10.57

Isoelectric Point (pI)

34.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0015749)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0462471 RchiOBHm_Chr5g0082411
rosa_multiflora	Rmu_co8410823.1_g000001 Rmu_sc0002187.1_g000065
rosa_roxburghii	Rroxscaffold_2G00137060 Rroxscaffold_3G00237620
rosa_rugosa	Rorug02G0315000 Rorug02G0372100 Rorug06G0055000
rosa_samantha	Rh2AG032600 Rh2AG032700 Rh2DG032300 Rh3CG322400 Rh3DG222000 Rh5AG164400 Rh7BG436300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	144, 213
AciI	CCGC	2 cut(s)	144, 211
AclWI	GGATC	2 cut(s)	281, 294
AfaI	GTAC	1 cut(s)	181
AfiI	CCNNNNNNNGG	1 cut(s)	90
AflII	CTTAAG	1 cut(s)	191
AgsI	TTSAA	5 cut(s)	12, 45, 78, 105, 360
AhdI	GACNNNNNGTC	1 cut(s)	263
Alw26I	GTCTC	3 cut(s)	25, 250, 404
AlwI	GGATC	2 cut(s)	281, 294
AoxI	GGCC	1 cut(s)	371
ApeKI	GCWGC	1 cut(s)	116
AspLEI	GCGC	1 cut(s)	144
AsuHPI	GGTGA	1 cut(s)	200
BamHI	GGATCC	1 cut(s)	286
BbsI	GAAGAC	4 cut(s)	44, 66, 161, 392
BbvI	GCAGC	1 cut(s)	103
BccI	CCATC	1 cut(s)	167
BcoDI	GTCTC	3 cut(s)	25, 250, 404
BfrI	CTTAAG	1 cut(s)	191
BisI	GCNGC	1 cut(s)	117
BlsI	GCNGC	1 cut(s)	118
BmeRI	GACNNNNNGTC	1 cut(s)	263
BmiI	GGNNCC	1 cut(s)	288
BmsI	GCATC	1 cut(s)	298
BpiI	GAAGAC	4 cut(s)	44, 66, 161, 392
BpmI	CTGGAG	1 cut(s)	204
BpuEI	CTTGAG	1 cut(s)	185
BsaI	GGTCTC	1 cut(s)	404
BsaJI	CCNNGG	1 cut(s)	84
Bsc4I	CCNNNNNNNGG	1 cut(s)	90
Bse1I	ACTGG	1 cut(s)	187
Bse3DI	GCAATG	1 cut(s)	311
BseDI	CCNNGG	1 cut(s)	84
BseGI	GGATG	3 cut(s)	175, 182, 234
BseLI	CCNNNNNNNGG	1 cut(s)	90
BseMI	GCAATG	1 cut(s)	311
BseNI	ACTGG	1 cut(s)	187
BseRI	GAGGAG	1 cut(s)	179
BseXI	GCAGC	1 cut(s)	103
Bsh1236I	CGCG	2 cut(s)	144, 213
BshFI	GGCC	1 cut(s)	373
BslI	CCNNNNNNNGG	1 cut(s)	90
BsmAI	GTCTC	3 cut(s)	25, 250, 404
BsmI	GAATGC	1 cut(s)	7
BsnI	GGCC	1 cut(s)	373
Bso31I	GGTCTC	1 cut(s)	404
Bsp143I	GATC	1 cut(s)	286
BspACI	CCGC	2 cut(s)	144, 211
BspANI	GGCC	1 cut(s)	373
BspFNI	CGCG	2 cut(s)	144, 213
BspLI	GGNNCC	1 cut(s)	288
BspPI	GGATC	2 cut(s)	281, 294
BspTI	CTTAAG	1 cut(s)	191
BspTNI	GGTCTC	1 cut(s)	404
BsrDI	GCAATG	1 cut(s)	311
BsrI	ACTGG	1 cut(s)	187
BssECI	CCNNGG	1 cut(s)	84
BssMI	GATC	1 cut(s)	286
BssT1I	CCWWGG	1 cut(s)	84
Bst4CI	ACNGT	1 cut(s)	415
Bst6I	CTCTTC	1 cut(s)	248
BstAFI	CTTAAG	1 cut(s)	191
BstF5I	GGATG	3 cut(s)	175, 182, 234
BstFNI	CGCG	2 cut(s)	144, 213
BstHHI	GCGC	1 cut(s)	144
BstKTI	GATC	1 cut(s)	289
BstMAI	GTCTC	3 cut(s)	25, 250, 404
BstMBI	GATC	1 cut(s)	286
BstMWI	GCNNNNNNNGC	1 cut(s)	196
BstUI	CGCG	2 cut(s)	144, 213
BstV1I	GCAGC	1 cut(s)	103
BstV2I	GAAGAC	4 cut(s)	44, 66, 161, 392
BstX2I	RGATCY	1 cut(s)	286
BstYI	RGATCY	1 cut(s)	286
BsuRI	GGCC	1 cut(s)	373
BtsCI	GGATG	3 cut(s)	175, 182, 234
CfoI	GCGC	1 cut(s)	144
CseI	GACGC	2 cut(s)	166, 194
Csp6I	GTAC	1 cut(s)	180
CviJI	RGCY	3 cut(s)	17, 190, 373
CviKI_1	RGCY	3 cut(s)	17, 190, 373
CviQI	GTAC	1 cut(s)	180
DpnI	GATC	1 cut(s)	288
DpnII	GATC	1 cut(s)	286
DriI	GACNNNNNGTC	1 cut(s)	263
Eam1104I	CTCTTC	1 cut(s)	248
Eam1105I	GACNNNNNGTC	1 cut(s)	263
EarI	CTCTTC	1 cut(s)	248
Eco130I	CCWWGG	1 cut(s)	84
Eco31I	GGTCTC	1 cut(s)	404
EcoT14I	CCWWGG	1 cut(s)	84
EcoT22I	ATGCAT	1 cut(s)	313
ErhI	CCWWGG	1 cut(s)	84
FaiI	YATR	2 cut(s)	54, 263
FauI	CCCGC	1 cut(s)	137
Fnu4HI	GCNGC	1 cut(s)	117
FokI	GGATG	3 cut(s)	182, 189, 241
Fsp4HI	GCNGC	1 cut(s)	117
GlaI	GCGC	1 cut(s)	143
GluI	GCNGC	1 cut(s)	117
GsuI	CTGGAG	1 cut(s)	204
HaeIII	GGCC	1 cut(s)	373
HgaI	GACGC	2 cut(s)	166, 194
HhaI	GCGC	1 cut(s)	144
Hin6I	GCGC	1 cut(s)	142
HinP1I	GCGC	1 cut(s)	142
HinfI	GANTC	2 cut(s)	95, 244
HphI	GGTGA	1 cut(s)	200
HpyCH4III	ACNGT	1 cut(s)	415
HpyCH4V	TGCA	5 cut(s)	7, 119, 305, 311, 316
HpyF10VI	GCNNNNNNNGC	1 cut(s)	196
HspAI	GCGC	1 cut(s)	142
Kzo9I	GATC	1 cut(s)	286
LpnPI	CCDG	4 cut(s)	146, 168, 226, 404
Lsp1109I	GCAGC	1 cut(s)	103
LweI	GCATC	1 cut(s)	298
MaeIII	GTNAC	2 cut(s)	206, 214
MalI	GATC	1 cut(s)	288
MboI	GATC	1 cut(s)	286
MboII	GAAGA	7 cut(s)	49, 66, 160, 163, 166, 265, 397
MflI	RGATCY	1 cut(s)	286
MluCI	AATT	2 cut(s)	109, 354
MmeI	TCCRAC	1 cut(s)	53
MnlI	CCTC	3 cut(s)	157, 160, 179
Mph1103I	ATGCAT	1 cut(s)	313
MseI	TTAA	2 cut(s)	192, 433
MspCI	CTTAAG	1 cut(s)	191
Mva1269I	GAATGC	1 cut(s)	7
MvnI	CGCG	2 cut(s)	144, 213
MwoI	GCNNNNNNNGC	1 cut(s)	196
NdeII	GATC	1 cut(s)	286
NlaIV	GGNNCC	1 cut(s)	288
NmuCI	GTSAC	1 cut(s)	206
NsiI	ATGCAT	1 cut(s)	313
PctI	GAATGC	1 cut(s)	7
PfeI	GAWTC	2 cut(s)	95, 244
PkrI	GCNGC	1 cut(s)	118
PspN4I	GGNNCC	1 cut(s)	288
PsuI	RGATCY	1 cut(s)	286
RsaI	GTAC	1 cut(s)	181
RsaNI	GTAC	1 cut(s)	180
SaqAI	TTAA	2 cut(s)	192, 433
SatI	GCNGC	1 cut(s)	117
Sau3AI	GATC	1 cut(s)	286
SfaNI	GCATC	1 cut(s)	298
SmlI	CTYRAG	2 cut(s)	191, 200
SmoI	CTYRAG	2 cut(s)	191, 200
Sse9I	AATT	2 cut(s)	109, 354
SsiI	CCGC	2 cut(s)	144, 211
StyI	CCWWGG	1 cut(s)	84
TaaI	ACNGT	1 cut(s)	415
TaqI	TCGA	3 cut(s)	68, 267, 383
TasI	AATT	2 cut(s)	109, 354
TatI	WGTACW	1 cut(s)	179
TfiI	GAWTC	2 cut(s)	95, 244
Tru1I	TTAA	2 cut(s)	192, 433
Tru9I	TTAA	2 cut(s)	192, 433
TseFI	GTSAC	1 cut(s)	206
TseI	GCWGC	1 cut(s)	116
Tsp45I	GTSAC	1 cut(s)	206
Vha464I	CTTAAG	1 cut(s)	191
Zsp2I	ATGCAT	1 cut(s)	313

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.