RchiOBHm_Chr2g0084251

Aminoacyl tRNA synthase complex-interacting multifunctional protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0014048
Physical Location & Seq
Forward (+)
98452 .. 102206
3755 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 816 bp
ATGGCAGCGAACGTTTTGAAATGCGGCACGGGAATAGGCGCGCGTCTGATATTCCTATCTCCGTCTCCTAAATCTCCACGGCCCTTTGGGCATTCACTTGCTCATTTCCACCAAATCACTGCGAATAGTTATCGTAGTATTTGTAGCAAACCGAAAGTTTGTGATTCTGCTGCTGATGCGTCATCACCATCGGCAAGAAGAAGAAGCGTGGTCTCCTCTTTTTGCGCCGCCACAGATGTTGAGAAGGCACAGGTAGAGGCAGAGGCGATAAGCGATGGTGATGAGGAACAGAAAAAGATAAAGGATGCAGCCGACCTGCTTGACATAAGGGTTGGGCTAGTCCTTAGGGCATGGAGGCATGAGGAAGCTGATTCTCTTTACGTGGAAGAGGTTGACATCGGAGAGCCTGAACCCAGAATCATCTGCAGTGGGCTCGTCAATTACATTCCTATTGATCACATTCAGGAGAGAAAAGTAGTTGTCCTTGCTAATCTGAAGCCCAGGAACATGCGGGGTGTCAAGTCTTGTGGAATGCTTATGGCCGCTTCTGATGCTTCCCATGAGAATGTTGAGCTTCTTGTGCCTCCTGAGGGTTCACTTCCTGGCCAAAGGATATGGTTTGGCTCTGAAGATGATCATCAAAATCAGCCTCCTCCTGCCACACCCAACCAGATTCAAAAGAAAAAGATATGGGAGCTGGTGCAACCTCATCTGAAGACAGATGATACTTGTATGGCTATGCTTGGGATGCATATAATGCGGACATCTGCAGGTGTGATAATCAGCAGATCTCTTAAACACGCAAATATCTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
tRNA_bind

Protein Analysis

271

Amino Acids

29.67

Weight (kDa)

6.79

Isoelectric Point (pI)

48.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
tRNA_bind PF01588 109 - 203 1.1e-28 Putative tRNA binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014048)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G59980
fragaria_vesca FvH4_1g00030 FvH4_1g00030 FvH4_1g00030
malus_domestica MD03G1140600.v1.1 MD11G1171300.v1.1
prunus_persica Prupe.6G126300_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0084251
rosa_laevigata RLG00000015603
rosa_multiflora Rmu_sc0003129.1_g000017
rosa_roxburghii Rroxscaffold_2G00156210
rosa_rugosa Rorug01G0452100
rosa_samantha Rh2AG000500 Rh2BG000400 Rh2CG000300 Rh2DG000500
rosa_wichuraiana Rw2G000030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 761
Acc36I ACCTGC 2 cut(s) 324, 761
AccII CGCG 2 cut(s) 41, 43
AciI CCGC 5 cut(s) 24, 228, 511, 543, 760
AclI AACGTT 1 cut(s) 12
AcoI YGGCCR 2 cut(s) 540, 604
AcuI CTGAAG 3 cut(s) 515, 648, 734
AfiI CCNNNNNNNGG 1 cut(s) 590
AgsI TTSAA 2 cut(s) 19, 677
AjnI CCWGG 2 cut(s) 500, 601
AluBI AGCT 3 cut(s) 368, 574, 697
AluI AGCT 3 cut(s) 368, 574, 697
Alw26I GTCTC 2 cut(s) 69, 217
AoxI GGCC 3 cut(s) 80, 540, 604
ApeKI GCWGC 3 cut(s) 5, 170, 308
AspLEI GCGC 3 cut(s) 41, 43, 227
AspS9I GGNCC 1 cut(s) 81
AsuHPI GGTGA 2 cut(s) 177, 290
AxyI CCTNAGG 2 cut(s) 344, 588
BalI TGGCCA 1 cut(s) 606
BanII GRGCYC 1 cut(s) 435
BbsI GAAGAC 1 cut(s) 722
BbvI GCAGC 3 cut(s) 17, 157, 320
BccI CCATC 2 cut(s) 196, 269
BceAI ACGGC 1 cut(s) 95
BcgI CGANNNNNNTGC 2 cut(s) 415, 449
BciT130I CCWGG 2 cut(s) 502, 603
BclI TGATCA 2 cut(s) 454, 634
BcoDI GTCTC 2 cut(s) 69, 217
BfaI CTAG 1 cut(s) 338
BfmI CTRYAG 2 cut(s) 424, 768
BfuAI ACCTGC 2 cut(s) 324, 761
BglI GCCNNNNNGGC 1 cut(s) 88
BglII AGATCT 1 cut(s) 788
BisI GCNGC 6 cut(s) 6, 25, 171, 228, 309, 543
BlsI GCNGC 6 cut(s) 7, 26, 172, 229, 310, 544
Bme1390I CCNGG 2 cut(s) 502, 603
BmgT120I GGNCC 1 cut(s) 81
BmrFI CCNGG 2 cut(s) 502, 603
BmsI GCATC 4 cut(s) 166, 295, 541, 738
BpiI GAAGAC 1 cut(s) 722
BsaAI YACGTR 1 cut(s) 382
BsaBI GATNNNNATC 1 cut(s) 636
BsaI GGTCTC 1 cut(s) 217
BsaJI CCNNGG 2 cut(s) 77, 500
Bsc4I CCNNNNNNNGG 1 cut(s) 590
Bse21I CCTNAGG 2 cut(s) 344, 588
Bse8I GATNNNNATC 1 cut(s) 636
BseBI CCWGG 2 cut(s) 502, 603
BseDI CCNNGG 2 cut(s) 77, 500
BseGI GGATG 2 cut(s) 310, 753
BseJI GATNNNNATC 1 cut(s) 636
BseLI CCNNNNNNNGG 1 cut(s) 590
BseMII CTCAG 1 cut(s) 579
BsePI GCGCGC 1 cut(s) 39
BseRI GAGGAG 2 cut(s) 205, 642
BseXI GCAGC 3 cut(s) 17, 157, 320
Bsh1236I CGCG 2 cut(s) 41, 43
BshFI GGCC 3 cut(s) 82, 542, 606
BslI CCNNNNNNNGG 1 cut(s) 590
BsmAI GTCTC 2 cut(s) 69, 217
BsmBI CGTCTC 1 cut(s) 69
BsmI GAATGC 2 cut(s) 91, 537
BsnI GGCC 3 cut(s) 82, 542, 606
Bso31I GGTCTC 1 cut(s) 217
Bsp1286I GDGCHC 1 cut(s) 435
Bsp143I GATC 3 cut(s) 454, 634, 788
BspACI CCGC 5 cut(s) 24, 228, 511, 543, 760
BspANI GGCC 3 cut(s) 82, 542, 606
BspCNI CTCAG 1 cut(s) 580
BspFNI CGCG 2 cut(s) 41, 43
BspMAI CTGCAG 2 cut(s) 428, 772
BspMI ACCTGC 2 cut(s) 324, 761
BspTNI GGTCTC 1 cut(s) 217
BssECI CCNNGG 2 cut(s) 77, 500
BssHII GCGCGC 1 cut(s) 39
BssMI GATC 3 cut(s) 454, 634, 788
Bst2UI CCWGG 2 cut(s) 502, 603
Bst6I CTCTTC 1 cut(s) 381
BstAPI GCANNNNNTGC 1 cut(s) 757
BstBAI YACGTR 1 cut(s) 382
BstC8I GCNNGC 1 cut(s) 41
BstDEI CTNAG 2 cut(s) 344, 588
BstDSI CCRYGG 1 cut(s) 77
BstF5I GGATG 2 cut(s) 310, 753
BstFNI CGCG 2 cut(s) 41, 43
BstHHI GCGC 3 cut(s) 41, 43, 227
BstKTI GATC 3 cut(s) 457, 637, 791
BstMAI GTCTC 2 cut(s) 69, 217
BstMBI GATC 3 cut(s) 454, 634, 788
BstMWI GCNNNNNNNGC 6 cut(s) 88, 176, 551, 580, 748, 757
BstNI CCWGG 2 cut(s) 502, 603
BstNSI RCATGY 1 cut(s) 511
BstSCI CCNGG 2 cut(s) 500, 601
BstSFI CTRYAG 2 cut(s) 424, 768
BstUI CGCG 2 cut(s) 41, 43
BstV1I GCAGC 3 cut(s) 17, 157, 320
BstV2I GAAGAC 1 cut(s) 722
BstX2I RGATCY 1 cut(s) 788
BstYI RGATCY 1 cut(s) 788
Bsu36I CCTNAGG 2 cut(s) 344, 588
BsuRI GGCC 3 cut(s) 82, 542, 606
BtgI CCRYGG 1 cut(s) 77
BtgZI GCGATG 1 cut(s) 288
BtsCI GGATG 2 cut(s) 310, 753
BtsI GCAGTG 2 cut(s) 117, 433
BtsIMutI CAGTG 2 cut(s) 117, 433
BveI ACCTGC 2 cut(s) 324, 761
Cac8I GCNNGC 1 cut(s) 41
CfoI GCGC 3 cut(s) 41, 43, 227
Cfr13I GGNCC 1 cut(s) 81
CseI GACGC 2 cut(s) 32, 168
CspCI CAANNNNNGTGG 4 cut(s) 220, 255, 508, 543
CviAII CATG 4 cut(s) 351, 359, 508, 560
DdeI CTNAG 2 cut(s) 344, 588
DpnI GATC 3 cut(s) 456, 636, 790
DpnII GATC 3 cut(s) 454, 634, 788
EaeI YGGCCR 2 cut(s) 540, 604
Eam1104I CTCTTC 1 cut(s) 381
EarI CTCTTC 1 cut(s) 381
Eco24I GRGCYC 1 cut(s) 435
Eco31I GGTCTC 1 cut(s) 217
Eco57I CTGAAG 3 cut(s) 515, 648, 734
Eco81I CCTNAGG 2 cut(s) 344, 588
EcoRII CCWGG 2 cut(s) 500, 601
EcoT22I ATGCAT 1 cut(s) 753
EcoT38I GRGCYC 1 cut(s) 435
Esp3I CGTCTC 1 cut(s) 69
FaeI CATG 4 cut(s) 354, 362, 511, 563
FatI CATG 4 cut(s) 350, 358, 507, 559
FauI CCCGC 1 cut(s) 504
FbaI TGATCA 2 cut(s) 454, 634
Fnu4HI GCNGC 6 cut(s) 6, 25, 171, 228, 309, 543
FokI GGATG 2 cut(s) 317, 760
FriOI GRGCYC 1 cut(s) 435
Fsp4HI GCNGC 6 cut(s) 6, 25, 171, 228, 309, 543
FspBI CTAG 1 cut(s) 338
GlaI GCGC 3 cut(s) 40, 42, 226
GluI GCNGC 6 cut(s) 6, 25, 171, 228, 309, 543
HaeIII GGCC 3 cut(s) 82, 542, 606
HgaI GACGC 2 cut(s) 32, 168
HhaI GCGC 3 cut(s) 41, 43, 227
Hin1II CATG 4 cut(s) 354, 362, 511, 563
Hin6I GCGC 3 cut(s) 39, 41, 225
HinP1I GCGC 3 cut(s) 39, 41, 225
HincII GTYRAC 1 cut(s) 394
HindII GTYRAC 1 cut(s) 394
HinfI GANTC 4 cut(s) 164, 371, 417, 673
HphI GGTGA 2 cut(s) 177, 290
Hpy166II GTNNAC 2 cut(s) 394, 596
Hpy188I TCNGA 6 cut(s) 48, 401, 495, 550, 628, 714
Hpy188III TCNNGA 2 cut(s) 464, 587
Hpy8I GTNNAC 2 cut(s) 394, 596
HpyAV CCTTC 1 cut(s) 238
HpyCH4IV ACGT 2 cut(s) 12, 381
HpyCH4V TGCA 5 cut(s) 308, 426, 703, 751, 770
HpyF10VI GCNNNNNNNGC 6 cut(s) 88, 176, 551, 580, 748, 757
HpyF3I CTNAG 2 cut(s) 344, 588
HpySE526I ACGT 2 cut(s) 12, 381
Hsp92II CATG 4 cut(s) 354, 362, 511, 563
HspAI GCGC 3 cut(s) 39, 41, 225
Ksp22I TGATCA 2 cut(s) 454, 634
Kzo9I GATC 3 cut(s) 454, 634, 788
LmnI GCTCC 1 cut(s) 694
Lsp1109I GCAGC 3 cut(s) 17, 157, 320
LweI GCATC 4 cut(s) 166, 295, 541, 738
MaeI CTAG 1 cut(s) 338
MaeII ACGT 2 cut(s) 12, 381
MalI GATC 3 cut(s) 456, 636, 790
MboI GATC 3 cut(s) 454, 634, 788
MboII GAAGA 5 cut(s) 210, 213, 398, 641, 727
MflI RGATCY 1 cut(s) 788
MhlI GDGCHC 1 cut(s) 435
MlsI TGGCCA 1 cut(s) 606
MluCI AATT 1 cut(s) 439
MluNI TGGCCA 1 cut(s) 606
Mox20I TGGCCA 1 cut(s) 606
Mph1103I ATGCAT 1 cut(s) 753
MscI TGGCCA 1 cut(s) 606
MseI TTAA 1 cut(s) 795
MslI CAYNNNNRTG 1 cut(s) 564
Msp20I TGGCCA 1 cut(s) 606
MspR9I CCNGG 2 cut(s) 502, 603
Mva1269I GAATGC 2 cut(s) 91, 537
MvaI CCWGG 2 cut(s) 502, 603
MvnI CGCG 2 cut(s) 41, 43
MwoI GCNNNNNNNGC 6 cut(s) 88, 176, 551, 580, 748, 757
NdeII GATC 3 cut(s) 454, 634, 788
NlaIII CATG 4 cut(s) 354, 362, 511, 563
NsiI ATGCAT 1 cut(s) 753
NspI RCATGY 1 cut(s) 511
PaqCI CACCTGC 1 cut(s) 761
PauI GCGCGC 1 cut(s) 39
PctI GAATGC 2 cut(s) 91, 537
PfeI GAWTC 4 cut(s) 164, 371, 417, 673
PkrI GCNGC 6 cut(s) 7, 26, 172, 229, 310, 544
Ppu21I YACGTR 1 cut(s) 382
Psp1406I AACGTT 1 cut(s) 12
Psp6I CCWGG 2 cut(s) 500, 601
PspGI CCWGG 2 cut(s) 500, 601
PspPI GGNCC 1 cut(s) 81
PstI CTGCAG 2 cut(s) 428, 772
PsuI RGATCY 1 cut(s) 788
PteI GCGCGC 1 cut(s) 39
RseI CAYNNNNRTG 1 cut(s) 564
SaqAI TTAA 1 cut(s) 795
SatI GCNGC 6 cut(s) 6, 25, 171, 228, 309, 543
Sau3AI GATC 3 cut(s) 454, 634, 788
Sau96I GGNCC 1 cut(s) 81
ScrFI CCNGG 2 cut(s) 502, 603
SduI GDGCHC 1 cut(s) 435
SfaNI GCATC 4 cut(s) 166, 295, 541, 738
SfcI CTRYAG 2 cut(s) 424, 768
SmiMI CAYNNNNRTG 1 cut(s) 564
Sse9I AATT 1 cut(s) 439
SsiI CCGC 5 cut(s) 24, 228, 511, 543, 760
SspMI CTAG 1 cut(s) 338
StyD4I CCNGG 2 cut(s) 500, 601
TaiI ACGT 2 cut(s) 15, 384
TasI AATT 1 cut(s) 439
TauI GCSGC 3 cut(s) 27, 230, 545
TfiI GAWTC 4 cut(s) 164, 371, 417, 673
Tru1I TTAA 1 cut(s) 795
Tru9I TTAA 1 cut(s) 795
TscAI CASTG 2 cut(s) 124, 433
TseI GCWGC 3 cut(s) 5, 170, 308
TspGWI ACGGA 1 cut(s) 51
TspRI CASTG 2 cut(s) 124, 433
XceI RCATGY 1 cut(s) 511
XspI CTAG 1 cut(s) 338
Zsp2I ATGCAT 1 cut(s) 753
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.