Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006837

Physical Location & Seq

Genomic Coordinates Reverse (-)

527749 .. 529447

Gene Structure 1699 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1449 bp

ATGTATAAACAAATTAGCTATAACTACAAGAGCCTAGAGAGAGCTAAAGAAAGAGAGGCAATGGCAAGCAGTGGCTATAGAGCTCACGTTTTAGCAATTCCTTATCCATCTCAAGGCCACATAAACCCGCTACTCCAATTCTCCAAACGCCTGGCCTCTTCTAAGGGCCTCAAAGTGACCCTGGCCAATACCATCTTCATCGCCAACTCTTTGAACCTACCCAAATCGGCAGGCTACGTCCAACTTGAGACCATATCCGATGGGTATGATGACGGCGGCTTTGCCCTAGCTGAAAGCATCGCCGTCTATCTATCCCGTTTAGAAGCCGAGGGCTCCAAATCCGTAGCTGAGATCATTACAAGGCACAAGTCAACACCAAACCCTATTGACTGCATAATTTATGACCCCTTCTTGCCTTGGGCTTTGGATGTAGCTAAACAATTTGGTCTAGCCACTGCTGCCTTCTTCACTCAAACCTGCACCGTTAATTACACTTACTATCTTGAGCATCATCATGGACTAATTAGGAATCCAGCTTCTTCTCCTAATAATCTTCCTCTCGGACTGCATATTCTTGAGCCTCAAGATATGCCGTCCTTCTTTTCAGTGCCGGGCTCGTATCCAGCTTACTTTGAGATGGTGTTGAACCAATTCTCTAATACCGACAAAGCTGATTTCATTTTCGCCAACACTTTCTACAAGTTAGAGGAAGAGGTGGTGGATTCGATGTCTCAAGTTTGTCCAATGTTGACAATAGGGCCAACAATTCCATCTAAATACTTGGACAATAGCATCAGAGACAACAAGGAGTATGGGCTTCATCTCTTCGAGATAGACTCGGCTTGCACCGACTGGCTCAACACCAAGCCAGCAGGCTCTGTCGTGTACGTAGCCTTTGGTAGTATGGCCAATCTGAGTGACAAGCAAATGCAGGAACTTGCCTTGGGCTTGAAGGCAACCGACTTCCACTTCTTGTGGGTGGTCAGGGATTCCGAAGAGGCAAAGCTTCCGGAAAAGTTCAAAGAAGAGATGGCCGAAAAAGGCTTGTTAGTGAATTGGAGCCCTCAGCTAGAAGTGTTGTCACACGAAGCAGTAGGGTGTTTTTTCACTCACGGTGGGTGGAATTCGACGATTGAAGCATTAAGCTTGGGAATGCCGATGGTTGTAATGCCACAGTGGACCGACCAGCCTACTAATTCCAAATTGGTTGAGGGTCTTTGGAAGGTTGGAATTAGAGTAACGGTTGATCAGAATAGTGGGTTGGTTGGAAGAGAAGAGATTGAGTTGTGCATTAGGAAAGTGATGGGGGAGGAGGGGATTGAAATGAAAATGAATGCTAAAAAGTGGAGGGAGCTGGCTATTGAGGCAGTGAGTGAGGGGGGCACCTCGGATAAGAATATTGATGAATTTGTATCGAAGTTGGTAATTGCTAAGCCAGCCAGCGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008194 GO:0009072 GO:0009696 GO:0009987 GO:0010029 GO:0010030 GO:0010817 GO:0016740 GO:0016757 GO:0016758 GO:0016999 GO:0017144 GO:0018874 GO:0018958 GO:0019752 GO:0032787 GO:0035251 GO:0042445 GO:0042537 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046482 GO:0046527 GO:0048518 GO:0048580 GO:0048582 GO:0050789 GO:0050793 GO:0051094 GO:0051239 GO:0051240 GO:0052639 GO:0052640 GO:0052641 GO:0065007 GO:0065008 GO:0071704 GO:0080002 GO:0080043 GO:0080044 GO:0090704 GO:1900140 GO:1901360 GO:1901564 GO:1901615 GO:2000026

KEGG Pathways

Metabolic & Signaling

ko00380 ko00966 ko01110 ko01210 map00380 map00966 map01110 map01210

Pfam Domains

Protein Families

UDPGT

Protein Analysis

482

Amino Acids

53.68

Weight (kDa)

5.29

Isoelectric Point (pI)

42.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_N	PF26168	30 - 64	4.2e-06	Glycosyltransferase, N-terminal domain
UDPGT	PF00201	287 - 409	1.9e-23	UDP-glucoronosyl and UDP-glucosyl transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006837)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G43820 AT2G43840 AT2G43840
fragaria_vesca	FvH4_1g00421
malus_domestica	MD02G1003300.v1.1 MD15G1146500.v1.1 MD15G1146700.v1.1
prunus_persica	Prupe.7G267900_v2.0.a1
pyrus_communis	pycom02g00180 pycom15g13150
rosa_chinensis	RchiOBHm_Chr2g0084921 RchiOBHm_Chr7g0212611
rosa_laevigata	RLG00000002877 RLG00000015649
rosa_multiflora	Rmu_co8326727.1_g000001 Rmu_sc0005246.1_g000002 Rmu_sc0008647.1_g000032
rosa_roxburghii	Rroxscaffold_3G00246670
rosa_rugosa	Rorug01G0457000 Rorug07G0135600
rosa_samantha	Rh2BG005900 Rh7AG267400 Rh7CG285900
rosa_wichuraiana	Rw2G000460 Rw7G023000 Rw7G023060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	485
AccB1I	GGYRCC	1 cut(s)	1382
AccIII	TCCGGA	1 cut(s)	1009
AciI	CCGC	2 cut(s)	128, 276
AcoI	YGGCCR	3 cut(s)	183, 906, 1032
AcsI	RAATTY	2 cut(s)	1123, 1406
AfaI	GTAC	1 cut(s)	887
AfiI	CCNNNNNNNGG	1 cut(s)	113
AgsI	TTSAA	6 cut(s)	214, 646, 952, 1021, 1136, 1322
AjnI	CCWGG	2 cut(s)	150, 180
AjuI	GAANNNNNNNTTGG	4 cut(s)	179, 211, 1244, 1276
Alw21I	GWGCWC	1 cut(s)	85
Alw26I	GTCTC	3 cut(s)	242, 735, 792
AlwNI	CAGNNNCTG	1 cut(s)	878
Aor13HI	TCCGGA	1 cut(s)	1009
AoxI	GGCC	7 cut(s)	115, 153, 166, 183, 758, 906, 1032
ApeKI	GCWGC	1 cut(s)	458
ApoI	RAATTY	2 cut(s)	1123, 1406
ArsI	GACNNNNNNTTYG	2 cut(s)	263, 295
Asp700I	GAANNNNTTC	1 cut(s)	650
AspS9I	GGNCC	3 cut(s)	166, 758, 1179
AsuC2I	CCSGG	1 cut(s)	612
AvaII	GGWCC	1 cut(s)	1179
BaeGI	GKGCMC	1 cut(s)	1385
BalI	TGGCCA	2 cut(s)	185, 908
BanI	GGYRCC	1 cut(s)	1382
BanII	GRGCYC	4 cut(s)	85, 335, 617, 1064
Bbv12I	GWGCWC	1 cut(s)	85
BbvCI	CCTCAGC	1 cut(s)	1065
BbvI	GCAGC	1 cut(s)	445
BccI	CCATC	8 cut(s)	115, 200, 254, 631, 778, 1024, 1153, 1297
BceAI	ACGGC	3 cut(s)	287, 289, 577
BciT130I	CCWGG	2 cut(s)	152, 182
BciVI	GTATCC	1 cut(s)	630
BclI	TGATCA	1 cut(s)	1246
BcnI	CCSGG	1 cut(s)	612
BcoDI	GTCTC	3 cut(s)	242, 735, 792
BfaI	CTAG	4 cut(s)	35, 287, 449, 1070
BfmI	CTRYAG	1 cut(s)	76
BfuAI	ACCTGC	1 cut(s)	485
BfuI	GTATCC	1 cut(s)	630
BisI	GCNGC	2 cut(s)	277, 459
BlpI	GCTNAGC	1 cut(s)	1431
BlsI	GCNGC	2 cut(s)	278, 460
Bme1390I	CCNGG	3 cut(s)	152, 182, 612
Bme18I	GGWCC	1 cut(s)	1179
BmgT120I	GGNCC	3 cut(s)	166, 758, 1179
BmiI	GGNNCC	3 cut(s)	334, 1061, 1384
BmrFI	CCNGG	3 cut(s)	152, 182, 612
BmsI	GCATC	3 cut(s)	306, 517, 801
BplI	GAGNNNNNCTC	2 cut(s)	821, 853
Bpu10I	CCTNAGC	1 cut(s)	1065
Bpu1102I	GCTNAGC	1 cut(s)	1431
BpuEI	CTTGAG	6 cut(s)	96, 266, 524, 567, 596, 717
BpuMI	CCSGG	1 cut(s)	612
BsaAI	YACGTR	1 cut(s)	889
BsaI	GGTCTC	1 cut(s)	242
BsaJI	CCNNGG	5 cut(s)	180, 327, 416, 942, 1386
BsaWI	WCCGGW	1 cut(s)	1009
Bsc4I	CCNNNNNNNGG	1 cut(s)	113
Bse1I	ACTGG	1 cut(s)	857
Bse3DI	GCAATG	1 cut(s)	66
BseAI	TCCGGA	1 cut(s)	1009
BseBI	CCWGG	2 cut(s)	152, 182
BseDI	CCNNGG	5 cut(s)	180, 327, 416, 942, 1386
BseGI	GGATG	1 cut(s)	433
BseLI	CCNNNNNNNGG	1 cut(s)	113
BseMI	GCAATG	1 cut(s)	66
BseMII	CTCAG	3 cut(s)	339, 905, 1079
BseNI	ACTGG	1 cut(s)	857
BseRI	GAGGAG	1 cut(s)	1325
BseSI	GKGCMC	1 cut(s)	1385
BseXI	GCAGC	1 cut(s)	445
BsgI	GTGCAG	1 cut(s)	463
BshFI	GGCC	7 cut(s)	117, 155, 168, 185, 760, 908, 1034
BshNI	GGYRCC	1 cut(s)	1382
BsiHKAI	GWGCWC	1 cut(s)	85
BsiSI	CCGG	2 cut(s)	611, 1010
BslI	CCNNNNNNNGG	1 cut(s)	113
BsmAI	GTCTC	3 cut(s)	242, 735, 792
BsmI	GAATGC	2 cut(s)	1158, 1339
BsnI	GGCC	7 cut(s)	117, 155, 168, 185, 760, 908, 1034
Bso31I	GGTCTC	1 cut(s)	242
Bsp1286I	GDGCHC	5 cut(s)	85, 335, 617, 1064, 1385
Bsp13I	TCCGGA	1 cut(s)	1009
Bsp143I	GATC	2 cut(s)	351, 1246
Bsp1720I	GCTNAGC	1 cut(s)	1431
BspACI	CCGC	2 cut(s)	128, 276
BspANI	GGCC	7 cut(s)	117, 155, 168, 185, 760, 908, 1034
BspCNI	CTCAG	3 cut(s)	340, 906, 1078
BspEI	TCCGGA	1 cut(s)	1009
BspLI	GGNNCC	3 cut(s)	334, 1061, 1384
BspMI	ACCTGC	1 cut(s)	485
BspT107I	GGYRCC	1 cut(s)	1382
BspTNI	GGTCTC	1 cut(s)	242
BsrDI	GCAATG	1 cut(s)	66
BsrI	ACTGG	1 cut(s)	857
BssECI	CCNNGG	5 cut(s)	180, 327, 416, 942, 1386
BssMI	GATC	2 cut(s)	351, 1246
BssT1I	CCWWGG	2 cut(s)	416, 942
Bst2UI	CCWGG	2 cut(s)	152, 182
Bst4CI	ACNGT	4 cut(s)	484, 1115, 1176, 1243
Bst6I	CTCTTC	7 cut(s)	163, 705, 830, 990, 1020, 1264, 1269
BstBAI	YACGTR	1 cut(s)	889
BstC8I	GCNNGC	8 cut(s)	67, 232, 844, 870, 874, 1356, 1437, 1441
BstDEI	CTNAG	5 cut(s)	162, 348, 914, 1065, 1431
BstF5I	GGATG	1 cut(s)	433
BstKTI	GATC	2 cut(s)	354, 1249
BstMAI	GTCTC	3 cut(s)	242, 735, 792
BstMBI	GATC	2 cut(s)	351, 1246
BstMWI	GCNNNNNNNGC	3 cut(s)	458, 1364, 1436
BstNI	CCWGG	2 cut(s)	152, 182
BstSCI	CCNGG	3 cut(s)	150, 180, 610
BstSFI	CTRYAG	1 cut(s)	76
BstSLI	GKGCMC	1 cut(s)	1385
BstSNI	TACGTA	1 cut(s)	889
BstV1I	GCAGC	1 cut(s)	445
BstXI	CCANNNNNNTGG	1 cut(s)	151
BsuI	GTATCC	1 cut(s)	630
BsuRI	GGCC	7 cut(s)	117, 155, 168, 185, 760, 908, 1034
BtgZI	GCGATG	2 cut(s)	184, 283
BtsCI	GGATG	1 cut(s)	433
BtsI	GCAGTG	3 cut(s)	76, 453, 1374
BtsIMutI	CAGTG	5 cut(s)	76, 453, 612, 1181, 1374
BveI	ACCTGC	1 cut(s)	485
Cac8I	GCNNGC	8 cut(s)	67, 232, 844, 870, 874, 1356, 1437, 1441
CaiI	CAGNNNCTG	1 cut(s)	878
Cfr13I	GGNCC	3 cut(s)	166, 758, 1179
Csp6I	GTAC	1 cut(s)	886
CviAII	CATG	1 cut(s)	515
CviQI	GTAC	1 cut(s)	886
DdeI	CTNAG	5 cut(s)	162, 348, 914, 1065, 1431
DpnI	GATC	2 cut(s)	353, 1248
DpnII	GATC	2 cut(s)	351, 1246
EaeI	YGGCCR	3 cut(s)	183, 906, 1032
Eam1104I	CTCTTC	7 cut(s)	163, 705, 830, 990, 1020, 1264, 1269
EarI	CTCTTC	7 cut(s)	163, 705, 830, 990, 1020, 1264, 1269
Ecl136II	GAGCTC	1 cut(s)	83
Eco105I	TACGTA	1 cut(s)	889
Eco130I	CCWWGG	2 cut(s)	416, 942
Eco24I	GRGCYC	4 cut(s)	85, 335, 617, 1064
Eco31I	GGTCTC	1 cut(s)	242
Eco47I	GGWCC	1 cut(s)	1179
Eco53kI	GAGCTC	1 cut(s)	83
EcoICRI	GAGCTC	1 cut(s)	83
EcoO109I	RGGNCCY	1 cut(s)	166
EcoRI	GAATTC	1 cut(s)	1123
EcoRII	CCWGG	2 cut(s)	150, 180
EcoT14I	CCWWGG	2 cut(s)	416, 942
EcoT38I	GRGCYC	4 cut(s)	85, 335, 617, 1064
ErhI	CCWWGG	2 cut(s)	416, 942
FaeI	CATG	1 cut(s)	518
FatI	CATG	1 cut(s)	514
FauI	CCCGC	1 cut(s)	135
FbaI	TGATCA	1 cut(s)	1246
Fnu4HI	GCNGC	2 cut(s)	277, 459
FokI	GGATG	1 cut(s)	440
FriOI	GRGCYC	4 cut(s)	85, 335, 617, 1064
Fsp4HI	GCNGC	2 cut(s)	277, 459
FspBI	CTAG	4 cut(s)	35, 287, 449, 1070
GluI	GCNGC	2 cut(s)	277, 459
HaeIII	GGCC	7 cut(s)	117, 155, 168, 185, 760, 908, 1034
HapII	CCGG	2 cut(s)	611, 1010
Hin1II	CATG	1 cut(s)	518
HincII	GTYRAC	2 cut(s)	372, 750
HindII	GTYRAC	2 cut(s)	372, 750
HindIII	AAGCTT	2 cut(s)	1004, 1144
HinfI	GANTC	4 cut(s)	529, 722, 836, 989
HpaII	CCGG	2 cut(s)	611, 1010
Hpy166II	GTNNAC	4 cut(s)	372, 750, 886, 1179
Hpy188I	TCNGA	7 cut(s)	259, 563, 797, 915, 994, 1251, 1390
Hpy188III	TCNNGA	5 cut(s)	503, 575, 584, 829, 1010
Hpy8I	GTNNAC	4 cut(s)	372, 750, 886, 1179
Hpy99I	CGWCG	1 cut(s)	1132
HpyAV	CCTTC	5 cut(s)	418, 472, 607, 946, 1216
HpyCH4III	ACNGT	4 cut(s)	484, 1115, 1176, 1243
HpyCH4IV	ACGT	3 cut(s)	87, 237, 888
HpyCH4V	TGCA	6 cut(s)	393, 480, 568, 846, 931, 1290
HpyF10VI	GCNNNNNNNGC	3 cut(s)	458, 1364, 1436
HpyF3I	CTNAG	5 cut(s)	162, 348, 914, 1065, 1431
HpySE526I	ACGT	3 cut(s)	87, 237, 888
Hsp92II	CATG	1 cut(s)	518
Kpn2I	TCCGGA	1 cut(s)	1009
Ksp22I	TGATCA	1 cut(s)	1246
Kzo9I	GATC	2 cut(s)	351, 1246
LmnI	GCTCC	3 cut(s)	338, 1059, 1351
Lsp1109I	GCAGC	1 cut(s)	445
LweI	GCATC	3 cut(s)	306, 517, 801
MaeI	CTAG	4 cut(s)	35, 287, 449, 1070
MaeII	ACGT	3 cut(s)	87, 237, 888
MaeIII	GTNAC	4 cut(s)	175, 917, 1080, 1237
MalI	GATC	2 cut(s)	353, 1248
MboI	GATC	2 cut(s)	351, 1246
MhlI	GDGCHC	5 cut(s)	85, 335, 617, 1064, 1385
MlsI	TGGCCA	2 cut(s)	185, 908
MluNI	TGGCCA	2 cut(s)	185, 908
MlyI	GAGTC	1 cut(s)	830
MmeI	TCCRAC	3 cut(s)	265, 1207, 1246
Mox20I	TGGCCA	2 cut(s)	185, 908
MroI	TCCGGA	1 cut(s)	1009
MroXI	GAANNNNTTC	1 cut(s)	650
MscI	TGGCCA	2 cut(s)	185, 908
MseI	TTAA	3 cut(s)	486, 1142, 1447
MslI	CAYNNNNRTG	1 cut(s)	513
Msp20I	TGGCCA	2 cut(s)	185, 908
MspI	CCGG	2 cut(s)	611, 1010
MspR9I	CCNGG	3 cut(s)	152, 182, 612
Mva1269I	GAATGC	2 cut(s)	1158, 1339
MvaI	CCWGG	2 cut(s)	152, 182
MwoI	GCNNNNNNNGC	3 cut(s)	458, 1364, 1436
NciI	CCSGG	1 cut(s)	612
NdeII	GATC	2 cut(s)	351, 1246
NlaIII	CATG	1 cut(s)	518
NlaIV	GGNNCC	3 cut(s)	334, 1061, 1384
NmeAIII	GCCGAG	2 cut(s)	352, 818
NmuCI	GTSAC	3 cut(s)	175, 917, 1080
PctI	GAATGC	2 cut(s)	1158, 1339
PdmI	GAANNNNTTC	1 cut(s)	650
PfeI	GAWTC	3 cut(s)	529, 722, 989
PkrI	GCNGC	2 cut(s)	278, 460
PleI	GAGTC	1 cut(s)	830
PpsI	GAGTC	1 cut(s)	830
Ppu21I	YACGTR	1 cut(s)	889
Psp124BI	GAGCTC	1 cut(s)	85
Psp6I	CCWGG	2 cut(s)	150, 180
PspGI	CCWGG	2 cut(s)	150, 180
PspN4I	GGNNCC	3 cut(s)	334, 1061, 1384
PspPI	GGNCC	3 cut(s)	166, 758, 1179
PstNI	CAGNNNCTG	1 cut(s)	878
RsaI	GTAC	1 cut(s)	887
RsaNI	GTAC	1 cut(s)	886
RseI	CAYNNNNRTG	1 cut(s)	513
SacI	GAGCTC	1 cut(s)	85
SaqAI	TTAA	3 cut(s)	486, 1142, 1447
SatI	GCNGC	2 cut(s)	277, 459
Sau3AI	GATC	2 cut(s)	351, 1246
Sau96I	GGNCC	3 cut(s)	166, 758, 1179
SchI	GAGTC	1 cut(s)	830
ScrFI	CCNGG	3 cut(s)	152, 182, 612
SduI	GDGCHC	5 cut(s)	85, 335, 617, 1064, 1385
SfaNI	GCATC	3 cut(s)	306, 517, 801
SfcI	CTRYAG	1 cut(s)	76
SinI	GGWCC	1 cut(s)	1179
SmiMI	CAYNNNNRTG	1 cut(s)	513
SmlI	CTYRAG	6 cut(s)	111, 245, 503, 575, 582, 732
SmoI	CTYRAG	6 cut(s)	111, 245, 503, 575, 582, 732
SnaBI	TACGTA	1 cut(s)	889
SsiI	CCGC	2 cut(s)	128, 276
SspI	AATATT	1 cut(s)	1399
SspMI	CTAG	4 cut(s)	35, 287, 449, 1070
SstI	GAGCTC	1 cut(s)	85
StyD4I	CCNGG	3 cut(s)	150, 180, 610
StyI	CCWWGG	2 cut(s)	416, 942
TaaI	ACNGT	4 cut(s)	484, 1115, 1176, 1243
TaiI	ACGT	3 cut(s)	90, 240, 891
TaqI	TCGA	4 cut(s)	725, 828, 1127, 1415
TaqII	GACCGA	1 cut(s)	1196
TauI	GCSGC	1 cut(s)	279
TfiI	GAWTC	3 cut(s)	529, 722, 989
Tru1I	TTAA	3 cut(s)	486, 1142, 1447
Tru9I	TTAA	3 cut(s)	486, 1142, 1447
TscAI	CASTG	5 cut(s)	76, 460, 612, 1181, 1374
TseFI	GTSAC	3 cut(s)	175, 917, 1080
TseI	GCWGC	1 cut(s)	458
Tsp45I	GTSAC	3 cut(s)	175, 917, 1080
TspDTI	ATGAA	6 cut(s)	187, 667, 809, 1340, 1346, 1419
TspGWI	ACGGA	1 cut(s)	331
TspRI	CASTG	5 cut(s)	76, 460, 612, 1181, 1374
VpaK11BI	GGWCC	1 cut(s)	1179
XapI	RAATTY	2 cut(s)	1123, 1406
XmnI	GAANNNNTTC	1 cut(s)	650
XspI	CTAG	4 cut(s)	35, 287, 449, 1070

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.