RchiOBHm_Chr2g0093061

acyl- acyl-carrier-protein --UDP-N-acetylglucosamine O-acyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0003927
Physical Location & Seq
Forward (+)
6414961 .. 6417806
2846 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 996 bp
ATGTGTGCACTATTCGAACTTAGCACCAAGCGCTTATTCACTGCCCTGAACAACCAGAGCTCTCTATCTCTGCGACGACGCTTCTTCTGCAGCACAGCTTCCGATGGCTTCATTCACCCCTCTGCGATCGTTCACCCCAATGCCGTTCTCGGCCAGGGTGTTTCAATTGGGCCCTTTTGTACTGTTGGGTCGTCGGTGAAGCTCGGAAATGGCTGCCGGTTACATCCCGGAAGCCATATTTTTGGGAATACTGAAGTTGGGGAGCGTTGTGTTTTGATGACTGGTGCCATTGTTGGTGATGATCTTCCGGGGCGTACTATGCTGGGTTGCAATAATGTTATTGGATATCATGCTGTGGTTGGTGTTAAATGCCAGGACATGAAATACAAGTCAGGGGATGAATGCTTTCTTGATGTTGGGGACAACAATGAGATTAGAGAGCATGCTTCAATCCATCGATCTTCGAAGTCAAGTGATACTACAGTTATTGGGAATAACAATCTTATCATGGGTTCTTGCCATATTGCCCATGATTGCAAGGTTGGGAACAACGTTATTTTTGCGAATAATACCCTTCTGGCAGGCCATGTTGTGGTGGAAGATTATGCTCACACTGCAGGGGCTGTTGTTGTTCATCAATTCTGTCATGTTGGTTCTTTCGCATTCATTGGCGGTGGCTCTGTGATTGCACAGGATGTTCCAAAGTACATGATGGTTGCAGGAGAAAGAGCTCAGCTCCGTGGCTTGAATCTTGAGGGTCTACGGCGTCATGGATTCACAGTGGCAGAGATCAGAAGCCTTAGAACAGCTTACCAAAGGATATTCATGCCTGCTGATGCAAATTCCAGTGGTTTTGAAGCACGTCTTGCTGAAGTGGAGCTCCATGATAAATTGGCTCATATACCTGCTGTGTGCTCCATGGTGCAGTCTATCCGTGATTCTTTCAAAGAAAAAAGACGTGGACTATGCAAATTCAGACATTGGAATAGCTCTTAA

Protein Analysis

331

Amino Acids

35.9

Weight (kDa)

8.56

Isoelectric Point (pI)

41.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GMPPB_C PF25087 39 - 101 3e-08 GMPPB C-terminal domain
Hexapep PF00132 47 - 81 1.8e-08 Bacterial transferase hexapeptide (six repeats)
LbH_EIF2B PF25084 144 - 233 8.9e-06 EIF2B subunit epsilon LbH domain
Hexapep PF00132 161 - 194 1.9e-09 Bacterial transferase hexapeptide (six repeats)
Acetyltransf_11 PF13720 232 - 323 3.9e-19 Udp N-acetylglucosamine O-acyltransferase; Domain 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 913
AccB1I GGYRCC 1 cut(s) 284
AccB7I CCANNNNNTGG 1 cut(s) 592
AccI GTMKAC 1 cut(s) 760
AciI CCGC 1 cut(s) 672
AclI AACGTT 1 cut(s) 552
AcoI YGGCCR 1 cut(s) 151
AcsI RAATTY 2 cut(s) 841, 971
AcuI CTGAAG 2 cut(s) 273, 891
AcyI GRCGYC 1 cut(s) 766
AfaI GTAC 3 cut(s) 181, 316, 707
AfeI AGCGCT 1 cut(s) 32
AfiI CCNNNNNNNGG 1 cut(s) 592
AgsI TTSAA 5 cut(s) 165, 450, 748, 857, 946
AjiI CACGTC 2 cut(s) 863, 959
AjnI CCWGG 2 cut(s) 153, 372
AjuI GAANNNNNNNTTGG 2 cut(s) 20, 52
AluBI AGCT 8 cut(s) 60, 98, 202, 731, 736, 809, 880, 990
AluI AGCT 8 cut(s) 60, 98, 202, 731, 736, 809, 880, 990
Alw21I GWGCWC 5 cut(s) 10, 62, 733, 882, 917
Alw44I GTGCAC 1 cut(s) 6
AlwNI CAGNNNCTG 1 cut(s) 623
Aor51HI AGCGCT 1 cut(s) 32
AoxI GGCC 3 cut(s) 151, 170, 583
ApaI GGGCCC 1 cut(s) 174
ApaLI GTGCAC 1 cut(s) 6
ApeKI GCWGC 2 cut(s) 90, 213
ApoI RAATTY 2 cut(s) 841, 971
Asp700I GAANNNNTTC 1 cut(s) 405
AspLEI GCGC 1 cut(s) 33
AspS9I GGNCC 2 cut(s) 170, 171
AsuC2I CCSGG 2 cut(s) 228, 309
AsuHPI GGTGA 4 cut(s) 107, 125, 208, 308
AsuII TTCGAA 2 cut(s) 15, 464
BaeGI GKGCMC 2 cut(s) 10, 174
BaeI ACNNNNGTAYC 2 cut(s) 468, 501
BanI GGYRCC 1 cut(s) 284
BanII GRGCYC 4 cut(s) 62, 174, 733, 882
Bbv12I GWGCWC 5 cut(s) 10, 62, 733, 882, 917
BbvI GCAGC 2 cut(s) 102, 200
BccI CCATC 3 cut(s) 98, 462, 706
BceAI ACGGC 2 cut(s) 128, 779
BciT130I CCWGG 2 cut(s) 155, 374
BcnI CCSGG 2 cut(s) 228, 309
BfmI CTRYAG 3 cut(s) 88, 480, 615
BfoI RGCGCY 1 cut(s) 34
BfuAI ACCTGC 1 cut(s) 913
BisI GCNGC 2 cut(s) 91, 214
BlpI GCTNAGC 1 cut(s) 732
BlsI GCNGC 2 cut(s) 92, 215
Bme1390I CCNGG 4 cut(s) 155, 228, 309, 374
BmgBI CACGTC 2 cut(s) 863, 959
BmgT120I GGNCC 2 cut(s) 170, 171
BmiI GGNNCC 2 cut(s) 172, 286
BmrFI CCNGG 4 cut(s) 155, 228, 309, 374
BmsI GCATC 1 cut(s) 826
BplI GAGNNNNNCTC 2 cut(s) 720, 752
Bpu1102I GCTNAGC 1 cut(s) 732
Bpu14I TTCGAA 2 cut(s) 15, 464
BpuEI CTTGAG 1 cut(s) 773
BpuMI CCSGG 2 cut(s) 228, 309
Bsa29I ATCGAT 1 cut(s) 457
BsaHI GRCGYC 1 cut(s) 766
BsaJI CCNNGG 4 cut(s) 154, 308, 739, 918
Bsc4I CCNNNNNNNGG 1 cut(s) 592
Bse118I RCCGGY 1 cut(s) 216
Bse1I ACTGG 2 cut(s) 286, 846
BseBI CCWGG 2 cut(s) 155, 374
BseCI ATCGAT 1 cut(s) 457
BseDI CCNNGG 4 cut(s) 154, 308, 739, 918
BseGI GGATG 3 cut(s) 223, 403, 700
BseLI CCNNNNNNNGG 1 cut(s) 592
BseMII CTCAG 1 cut(s) 746
BseNI ACTGG 2 cut(s) 286, 846
BseSI GKGCMC 2 cut(s) 10, 174
BseXI GCAGC 2 cut(s) 102, 200
BseYI CCCAGC 1 cut(s) 322
BsgI GTGCAG 1 cut(s) 944
Bsh1285I CGRYCG 1 cut(s) 129
BshFI GGCC 3 cut(s) 153, 172, 585
BshNI GGYRCC 1 cut(s) 284
BshVI ATCGAT 1 cut(s) 457
BsiEI CGRYCG 1 cut(s) 129
BsiHKAI GWGCWC 5 cut(s) 10, 62, 733, 882, 917
BsiSI CCGG 3 cut(s) 217, 228, 308
BslFI GGGAC 1 cut(s) 434
BslI CCNNNNNNNGG 1 cut(s) 592
BsmFI GGGAC 1 cut(s) 434
BsmI GAATGC 2 cut(s) 407, 662
BsnI GGCC 3 cut(s) 153, 172, 585
Bsp119I TTCGAA 2 cut(s) 15, 464
Bsp120I GGGCCC 1 cut(s) 170
Bsp1286I GDGCHC 6 cut(s) 10, 62, 174, 733, 882, 917
Bsp143I GATC 4 cut(s) 126, 301, 458, 789
Bsp1720I GCTNAGC 1 cut(s) 732
Bsp19I CCATGG 1 cut(s) 918
BspACI CCGC 1 cut(s) 672
BspANI GGCC 3 cut(s) 153, 172, 585
BspCNI CTCAG 1 cut(s) 745
BspDI ATCGAT 1 cut(s) 457
BspLI GGNNCC 2 cut(s) 172, 286
BspMAI CTGCAG 2 cut(s) 92, 619
BspMI ACCTGC 1 cut(s) 913
BspT104I TTCGAA 2 cut(s) 15, 464
BspT107I GGYRCC 1 cut(s) 284
BsrFI RCCGGY 1 cut(s) 216
BsrI ACTGG 2 cut(s) 286, 846
BssAI RCCGGY 1 cut(s) 216
BssECI CCNNGG 4 cut(s) 154, 308, 739, 918
BssMI GATC 4 cut(s) 126, 301, 458, 789
BssNI GRCGYC 1 cut(s) 766
BssT1I CCWWGG 1 cut(s) 918
Bst2UI CCWGG 2 cut(s) 155, 374
Bst4CI ACNGT 3 cut(s) 184, 484, 781
BstACI GRCGYC 1 cut(s) 766
BstAPI GCANNNNNTGC 1 cut(s) 866
BstBI TTCGAA 2 cut(s) 15, 464
BstC8I GCNNGC 3 cut(s) 444, 583, 831
BstDEI CTNAG 3 cut(s) 20, 732, 800
BstDSI CCRYGG 2 cut(s) 739, 918
BstF5I GGATG 3 cut(s) 223, 403, 700
BstH2I RGCGCY 1 cut(s) 34
BstHHI GCGC 1 cut(s) 33
BstKTI GATC 4 cut(s) 129, 304, 461, 792
BstMBI GATC 4 cut(s) 126, 301, 458, 789
BstMCI CGRYCG 1 cut(s) 129
BstMWI GCNNNNNNNGC 5 cut(s) 30, 87, 319, 614, 866
BstNI CCWGG 2 cut(s) 155, 374
BstNSI RCATGY 1 cut(s) 446
BstSCI CCNGG 4 cut(s) 153, 226, 307, 372
BstSFI CTRYAG 3 cut(s) 88, 480, 615
BstSLI GKGCMC 2 cut(s) 10, 174
BstV1I GCAGC 2 cut(s) 102, 200
BstXI CCANNNNNNTGG 1 cut(s) 242
Bsu15I ATCGAT 1 cut(s) 457
BsuRI GGCC 3 cut(s) 153, 172, 585
BsuTUI ATCGAT 1 cut(s) 457
BtgI CCRYGG 2 cut(s) 739, 918
BtrI CACGTC 2 cut(s) 863, 959
BtsCI GGATG 3 cut(s) 223, 403, 700
BtsI GCAGTG 2 cut(s) 39, 612
BtsIMutI CAGTG 4 cut(s) 39, 612, 786, 853
BveI ACCTGC 1 cut(s) 913
Cac8I GCNNGC 3 cut(s) 444, 583, 831
CaiI CAGNNNCTG 1 cut(s) 623
CfoI GCGC 1 cut(s) 33
Cfr10I RCCGGY 1 cut(s) 216
Cfr13I GGNCC 2 cut(s) 170, 171
ClaI ATCGAT 1 cut(s) 457
CseI GACGC 2 cut(s) 87, 755
Csp6I GTAC 3 cut(s) 180, 315, 706
CviQI GTAC 3 cut(s) 180, 315, 706
DdeI CTNAG 3 cut(s) 20, 732, 800
DpnI GATC 4 cut(s) 128, 303, 460, 791
DpnII GATC 4 cut(s) 126, 301, 458, 789
EaeI YGGCCR 1 cut(s) 151
Ecl136II GAGCTC 3 cut(s) 60, 731, 880
Eco130I CCWWGG 1 cut(s) 918
Eco24I GRGCYC 4 cut(s) 62, 174, 733, 882
Eco32I GATATC 1 cut(s) 347
Eco47III AGCGCT 1 cut(s) 32
Eco53kI GAGCTC 3 cut(s) 60, 731, 880
Eco57I CTGAAG 2 cut(s) 273, 891
EcoICRI GAGCTC 3 cut(s) 60, 731, 880
EcoO109I RGGNCCY 1 cut(s) 171
EcoRII CCWGG 2 cut(s) 153, 372
EcoRV GATATC 1 cut(s) 347
EcoT14I CCWWGG 1 cut(s) 918
EcoT38I GRGCYC 4 cut(s) 62, 174, 733, 882
ErhI CCWWGG 1 cut(s) 918
FalI AAGNNNNNCTT 2 cut(s) 849, 881
FaqI GGGAC 1 cut(s) 434
FblI GTMKAC 1 cut(s) 760
Fnu4HI GCNGC 2 cut(s) 91, 214
FokI GGATG 3 cut(s) 210, 410, 707
FriOI GRGCYC 4 cut(s) 62, 174, 733, 882
Fsp4HI GCNGC 2 cut(s) 91, 214
GlaI GCGC 1 cut(s) 32
GluI GCNGC 2 cut(s) 91, 214
GsaI CCCAGC 1 cut(s) 326
HaeII RGCGCY 1 cut(s) 34
HaeIII GGCC 3 cut(s) 153, 172, 585
HapII CCGG 3 cut(s) 217, 228, 308
HgaI GACGC 2 cut(s) 87, 755
HhaI GCGC 1 cut(s) 33
Hin1I GRCGYC 1 cut(s) 766
Hin6I GCGC 1 cut(s) 31
HinP1I GCGC 1 cut(s) 31
HinfI GANTC 3 cut(s) 748, 774, 938
HpaII CCGG 3 cut(s) 217, 228, 308
HphI GGTGA 4 cut(s) 107, 125, 208, 308
Hpy166II GTNNAC 4 cut(s) 8, 133, 761, 962
Hpy188I TCNGA 4 cut(s) 103, 206, 794, 977
Hpy188III TCNNGA 2 cut(s) 410, 752
Hpy8I GTNNAC 4 cut(s) 8, 133, 761, 962
Hpy99I CGWCG 3 cut(s) 78, 81, 196
HpyAV CCTTC 1 cut(s) 584
HpyCH4III ACNGT 3 cut(s) 184, 484, 781
HpyCH4IV ACGT 3 cut(s) 552, 862, 958
HpyF10VI GCNNNNNNNGC 5 cut(s) 30, 87, 319, 614, 866
HpyF3I CTNAG 3 cut(s) 20, 732, 800
HpySE526I ACGT 3 cut(s) 552, 862, 958
Hsp92I GRCGYC 1 cut(s) 766
HspAI GCGC 1 cut(s) 31
Kzo9I GATC 4 cut(s) 126, 301, 458, 789
LmnI GCTCC 5 cut(s) 262, 741, 877, 885, 920
Lsp1109I GCAGC 2 cut(s) 102, 200
LweI GCATC 1 cut(s) 826
MaeII ACGT 3 cut(s) 552, 862, 958
MaeIII GTNAC 1 cut(s) 219
MalI GATC 4 cut(s) 128, 303, 460, 791
MboI GATC 4 cut(s) 126, 301, 458, 789
MboII GAAGA 4 cut(s) 76, 296, 453, 611
MfeI CAATTG 1 cut(s) 165
MhlI GDGCHC 6 cut(s) 10, 62, 174, 733, 882, 917
MluCI AATT 5 cut(s) 165, 638, 841, 890, 971
MnlI CCTC 2 cut(s) 130, 748
MroXI GAANNNNTTC 1 cut(s) 405
MseI TTAA 2 cut(s) 366, 994
MslI CAYNNNNRTG 1 cut(s) 138
MspI CCGG 3 cut(s) 217, 228, 308
MspR9I CCNGG 4 cut(s) 155, 228, 309, 374
MunI CAATTG 1 cut(s) 165
Mva1269I GAATGC 2 cut(s) 407, 662
MvaI CCWGG 2 cut(s) 155, 374
MwoI GCNNNNNNNGC 5 cut(s) 30, 87, 319, 614, 866
NciI CCSGG 2 cut(s) 228, 309
NcoI CCATGG 1 cut(s) 918
NdeII GATC 4 cut(s) 126, 301, 458, 789
NlaIV GGNNCC 2 cut(s) 172, 286
NmeAIII GCCGAG 1 cut(s) 129
NspI RCATGY 1 cut(s) 446
NspV TTCGAA 2 cut(s) 15, 464
PaeI GCATGC 1 cut(s) 446
PctI GAATGC 2 cut(s) 407, 662
PdmI GAANNNNTTC 1 cut(s) 405
PfeI GAWTC 3 cut(s) 748, 774, 938
PflMI CCANNNNNTGG 1 cut(s) 592
PfoI TCCNGGA 1 cut(s) 226
PkrI GCNGC 2 cut(s) 92, 215
Ple19I CGATCG 1 cut(s) 129
Psp124BI GAGCTC 3 cut(s) 62, 733, 882
Psp1406I AACGTT 1 cut(s) 552
Psp6I CCWGG 2 cut(s) 153, 372
PspFI CCCAGC 1 cut(s) 322
PspGI CCWGG 2 cut(s) 153, 372
PspN4I GGNNCC 2 cut(s) 172, 286
PspOMI GGGCCC 1 cut(s) 170
PspPI GGNCC 2 cut(s) 170, 171
PstI CTGCAG 2 cut(s) 92, 619
PstNI CAGNNNCTG 1 cut(s) 623
PvuI CGATCG 1 cut(s) 129
RsaI GTAC 3 cut(s) 181, 316, 707
RsaNI GTAC 3 cut(s) 180, 315, 706
RseI CAYNNNNRTG 1 cut(s) 138
SacI GAGCTC 3 cut(s) 62, 733, 882
SaqAI TTAA 2 cut(s) 366, 994
SatI GCNGC 2 cut(s) 91, 214
Sau3AI GATC 4 cut(s) 126, 301, 458, 789
Sau96I GGNCC 2 cut(s) 170, 171
ScrFI CCNGG 4 cut(s) 155, 228, 309, 374
SduI GDGCHC 6 cut(s) 10, 62, 174, 733, 882, 917
SfaNI GCATC 1 cut(s) 826
SfcI CTRYAG 3 cut(s) 88, 480, 615
SfuI TTCGAA 2 cut(s) 15, 464
SmiMI CAYNNNNRTG 1 cut(s) 138
SmlI CTYRAG 1 cut(s) 752
SmoI CTYRAG 1 cut(s) 752
SphI GCATGC 1 cut(s) 446
Sse9I AATT 5 cut(s) 165, 638, 841, 890, 971
SsiI CCGC 1 cut(s) 672
SstI GAGCTC 3 cut(s) 62, 733, 882
StyD4I CCNGG 4 cut(s) 153, 226, 307, 372
StyI CCWWGG 1 cut(s) 918
TaaI ACNGT 3 cut(s) 184, 484, 781
TaiI ACGT 3 cut(s) 555, 865, 961
TaqI TCGA 3 cut(s) 15, 457, 464
TasI AATT 5 cut(s) 165, 638, 841, 890, 971
TatI WGTACW 2 cut(s) 179, 705
TfiI GAWTC 3 cut(s) 748, 774, 938
Tru1I TTAA 2 cut(s) 366, 994
Tru9I TTAA 2 cut(s) 366, 994
TscAI CASTG 4 cut(s) 46, 619, 786, 853
TseI GCWGC 2 cut(s) 90, 213
TspDTI ATGAA 6 cut(s) 100, 395, 414, 623, 655, 814
TspGWI ACGGA 2 cut(s) 728, 923
TspRI CASTG 4 cut(s) 46, 619, 786, 853
Van91I CCANNNNNTGG 1 cut(s) 592
VneI GTGCAC 1 cut(s) 6
XapI RAATTY 2 cut(s) 841, 971
XceI RCATGY 1 cut(s) 446
XmiI GTMKAC 1 cut(s) 760
XmnI GAANNNNTTC 1 cut(s) 405
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.