Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005769

Physical Location & Seq

Genomic Coordinates Reverse (-)

7899830 .. 7900596

Gene Structure 767 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGGACAATGTTTATGCACCAGGAAGGAACCATCTCTTTGTTCCAGGGCCAGTCAATATCCCGGAACCCGTCCTTCGGGCAATGAACAGAAACAATGTGGACTATGGTTCTCCAGCTGTTTCAGCAATGACAAAAGTCCTGCTCAAGGATGTCAAGAAGATTTTCAAGAATACTACCAGAACTCCATTTATGATCTCTACCATAGGTACTGGTGCATGGGAGAGTGCACTTACAAATACATTGTCCCCTGGAGATCGGATTGTGTCTTTCCTGATTGGCCAATTCAGTTTGCTGTGGATTGATCAACGGCAGCACGTTAATTTCAATGTCGATGTTGTGGAAAGTGAATGGGGCCAAGGTGCCAACCTTGACATTCTAGCATTAAAAAGTGTCGATGCCACTGCACACACTATAAAGGCAGTATGCATTGTTCACAATGAAACGACAACTGGAGTTAACAATAACTTGGCTACAATGAGAAAAATACTTGACCACTACAGGCATCCGGCTTTCTTTCTTGTTGATGGAATGTCTTCCATATGTGCTCTGGATTTCCGTATAGATGAATGGGGAGTAGAAGTAGCCTTAACTGGCTCCCAGAAAGCTCTTTCCCTTCCCACTGGCATAGGGATTGTGTGTGCAAGCCCCAAAGCTCTTTCCTGCCCATTTGGTACTACTTCAACTCCTAATCCTGGATATGTATCAAGCATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001505 GO:0003674 GO:0003824 GO:0004760 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0005886 GO:0006082 GO:0006520 GO:0006544 GO:0006545 GO:0006807 GO:0008150 GO:0008152 GO:0008453 GO:0008483 GO:0008652 GO:0009058 GO:0009069 GO:0009070 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009853 GO:0009987 GO:0016020 GO:0016053 GO:0016740 GO:0016769 GO:0017144 GO:0019265 GO:0019752 GO:0042133 GO:0042136 GO:0042579 GO:0043094 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0048046 GO:0050281 GO:0065007 GO:0065008 GO:0071704 GO:0071944 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00250 ko00260 ko00630 ko00680 ko01100 ko01110 ko01120 ko01130 ko01200 ko04146 map00250 map00260 map00630 map00680 map01100 map01110 map01120 map01130 map01200 map04146

Pfam Domains

Protein Families

Aminotran_5

Protein Analysis

237

Amino Acids

25.7

Weight (kDa)

7.0

Isoelectric Point (pI)

26.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_5	PF00266	50 - 219	8.3e-13	Aminotransferase class-V

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005769)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G13360 AT2G13360 AT2G13360
fragaria_vesca	FvH4_3g28090
malus_domestica	MD03G1168700.v1.1 MD11G1194500.v1.1
prunus_persica	Prupe.4G258800_v2.0.a1 Prupe.4G258800_v2.0.a1 Prupe.4G258800_v2.0.a1 Prupe.4G258800_v2.0.a1
pyrus_communis	pycom11g16320
rosa_chinensis	RchiOBHm_Chr2g0084601 RchiOBHm_Chr2g0095031 RchiOBHm_Chr5g0050781 RchiOBHm_Chr5g0076081
rosa_laevigata	RLG00000006062 RLG00000034732
rosa_multiflora	Rmu_co8407365.1_g000001 Rmu_sc0004083.1_g000010
rosa_roxburghii	Rroxscaffold_1G00029950
rosa_rugosa	Rorug05G0263800
rosa_samantha	Rh2DG096300 Rh5BG345400 Rh5CG373200 Rh5DG358600
rosa_wichuraiana	Rw4G006950 Rw5G031690 Rw7G001080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	359
AcoI	YGGCCR	1 cut(s)	277
AfaI	GTAC	2 cut(s)	208, 673
AfiI	CCNNNNNNNGG	3 cut(s)	75, 145, 692
AgsI	TTSAA	3 cut(s)	166, 325, 681
AjnI	CCWGG	4 cut(s)	19, 43, 247, 691
AluBI	AGCT	3 cut(s)	116, 605, 653
AluI	AGCT	3 cut(s)	116, 605, 653
Alw21I	GWGCWC	2 cut(s)	229, 547
Alw44I	GTGCAC	1 cut(s)	225
AoxI	GGCC	3 cut(s)	47, 277, 352
ApaLI	GTGCAC	1 cut(s)	225
ApeKI	GCWGC	1 cut(s)	310
ArsI	GACNNNNNNTTYG	2 cut(s)	227, 259
Asp700I	GAANNNNTTC	2 cut(s)	161, 532
AspS9I	GGNCC	2 cut(s)	47, 352
AsuC2I	CCSGG	1 cut(s)	62
BaeGI	GKGCMC	1 cut(s)	229
BalI	TGGCCA	1 cut(s)	279
BanI	GGYRCC	1 cut(s)	359
BbsI	GAAGAC	1 cut(s)	525
Bbv12I	GWGCWC	2 cut(s)	229, 547
BbvI	GCAGC	1 cut(s)	322
BccI	CCATC	2 cut(s)	39, 518
BceAI	ACGGC	1 cut(s)	323
BcgI	CGANNNNNNTGC	2 cut(s)	383, 417
BciT130I	CCWGG	4 cut(s)	21, 45, 249, 693
BclI	TGATCA	1 cut(s)	301
BcnI	CCSGG	1 cut(s)	62
BfaI	CTAG	1 cut(s)	377
BfmI	CTRYAG	1 cut(s)	496
BisI	GCNGC	1 cut(s)	311
BlsI	GCNGC	1 cut(s)	312
Bme1390I	CCNGG	5 cut(s)	21, 45, 62, 249, 693
BmgT120I	GGNCC	2 cut(s)	47, 352
BmiI	GGNNCC	5 cut(s)	29, 66, 353, 361, 595
BmrFI	CCNGG	5 cut(s)	21, 45, 62, 249, 693
BmsI	GCATC	2 cut(s)	385, 511
BoxI	GACNNNNGTC	1 cut(s)	134
BpiI	GAAGAC	1 cut(s)	525
BpmI	CTGGAG	3 cut(s)	96, 270, 471
BpuEI	CTTGAG	1 cut(s)	128
BpuMI	CCSGG	1 cut(s)	62
BsaBI	GATNNNNATC	1 cut(s)	700
BsaJI	CCNNGG	3 cut(s)	44, 247, 355
BsaXI	ACNNNNNCTCC	6 cut(s)	166, 196, 564, 594, 667, 697
Bsc4I	CCNNNNNNNGG	3 cut(s)	75, 145, 692
Bse1I	ACTGG	5 cut(s)	50, 214, 454, 595, 625
Bse3DI	GCAATG	2 cut(s)	87, 132
Bse8I	GATNNNNATC	1 cut(s)	700
BseBI	CCWGG	4 cut(s)	21, 45, 249, 693
BseDI	CCNNGG	3 cut(s)	44, 247, 355
BseGI	GGATG	2 cut(s)	154, 502
BseJI	GATNNNNATC	1 cut(s)	700
BseLI	CCNNNNNNNGG	3 cut(s)	75, 145, 692
BseMI	GCAATG	2 cut(s)	87, 132
BseNI	ACTGG	5 cut(s)	50, 214, 454, 595, 625
BseSI	GKGCMC	1 cut(s)	229
BseXI	GCAGC	1 cut(s)	322
BsgI	GTGCAG	1 cut(s)	387
BshFI	GGCC	3 cut(s)	49, 279, 354
BshNI	GGYRCC	1 cut(s)	359
BsiHKAI	GWGCWC	2 cut(s)	229, 547
BsiSI	CCGG	2 cut(s)	62, 506
BslFI	GGGAC	1 cut(s)	229
BslI	CCNNNNNNNGG	3 cut(s)	75, 145, 692
BsmFI	GGGAC	1 cut(s)	229
BsnI	GGCC	3 cut(s)	49, 279, 354
Bsp1286I	GDGCHC	2 cut(s)	229, 547
Bsp143I	GATC	3 cut(s)	192, 253, 301
BspANI	GGCC	3 cut(s)	49, 279, 354
BspLI	GGNNCC	5 cut(s)	29, 66, 353, 361, 595
BspT107I	GGYRCC	1 cut(s)	359
BsrDI	GCAATG	2 cut(s)	87, 132
BsrI	ACTGG	5 cut(s)	50, 214, 454, 595, 625
BssECI	CCNNGG	3 cut(s)	44, 247, 355
BssMI	GATC	3 cut(s)	192, 253, 301
BssT1I	CCWWGG	1 cut(s)	355
Bst2UI	CCWGG	4 cut(s)	21, 45, 249, 693
BstC8I	GCNNGC	1 cut(s)	643
BstENI	CCTNNNNNAGG	1 cut(s)	143
BstF5I	GGATG	2 cut(s)	154, 502
BstKTI	GATC	3 cut(s)	195, 256, 304
BstMBI	GATC	3 cut(s)	192, 253, 301
BstMWI	GCNNNNNNNGC	1 cut(s)	122
BstNI	CCWGG	4 cut(s)	21, 45, 249, 693
BstPAI	GACNNNNGTC	1 cut(s)	134
BstSCI	CCNGG	5 cut(s)	19, 43, 60, 247, 691
BstSFI	CTRYAG	1 cut(s)	496
BstSLI	GKGCMC	1 cut(s)	229
BstV1I	GCAGC	1 cut(s)	322
BstV2I	GAAGAC	1 cut(s)	525
BsuRI	GGCC	3 cut(s)	49, 279, 354
BtsCI	GGATG	2 cut(s)	154, 502
BtsI	GCAGTG	1 cut(s)	399
BtsIMutI	CAGTG	2 cut(s)	399, 618
Cac8I	GCNNGC	1 cut(s)	643
Cfr13I	GGNCC	2 cut(s)	47, 352
Csp6I	GTAC	2 cut(s)	207, 672
CviAII	CATG	1 cut(s)	216
CviQI	GTAC	2 cut(s)	207, 672
DpnI	GATC	3 cut(s)	194, 255, 303
DpnII	GATC	3 cut(s)	192, 253, 301
EaeI	YGGCCR	1 cut(s)	277
Eco130I	CCWWGG	1 cut(s)	355
EcoNI	CCTNNNNNAGG	1 cut(s)	143
EcoRII	CCWGG	4 cut(s)	19, 43, 247, 691
EcoT14I	CCWWGG	1 cut(s)	355
EcoT22I	ATGCAT	1 cut(s)	428
ErhI	CCWWGG	1 cut(s)	355
FaeI	CATG	1 cut(s)	219
FaqI	GGGAC	1 cut(s)	229
FatI	CATG	1 cut(s)	215
FauNDI	CATATG	1 cut(s)	539
FbaI	TGATCA	1 cut(s)	301
Fnu4HI	GCNGC	1 cut(s)	311
FokI	GGATG	2 cut(s)	161, 489
Fsp4HI	GCNGC	1 cut(s)	311
FspBI	CTAG	1 cut(s)	377
GluI	GCNGC	1 cut(s)	311
GsuI	CTGGAG	3 cut(s)	96, 270, 471
HaeIII	GGCC	3 cut(s)	49, 279, 354
HapII	CCGG	2 cut(s)	62, 506
Hin1II	CATG	1 cut(s)	219
HincII	GTYRAC	1 cut(s)	457
HindII	GTYRAC	1 cut(s)	457
HpaI	GTTAAC	1 cut(s)	457
HpaII	CCGG	2 cut(s)	62, 506
Hpy166II	GTNNAC	4 cut(s)	100, 227, 433, 457
Hpy188I	TCNGA	1 cut(s)	258
Hpy188III	TCNNGA	4 cut(s)	154, 166, 271, 548
Hpy8I	GTNNAC	4 cut(s)	100, 227, 433, 457
HpyAV	CCTTC	3 cut(s)	18, 83, 623
HpyCH4IV	ACGT	1 cut(s)	315
HpyCH4V	TGCA	6 cut(s)	17, 215, 227, 404, 426, 641
HpyF10VI	GCNNNNNNNGC	1 cut(s)	122
HpySE526I	ACGT	1 cut(s)	315
Hsp92II	CATG	1 cut(s)	219
Ksp22I	TGATCA	1 cut(s)	301
KspAI	GTTAAC	1 cut(s)	457
Kzo9I	GATC	3 cut(s)	192, 253, 301
LmnI	GCTCC	1 cut(s)	599
Lsp1109I	GCAGC	1 cut(s)	322
LweI	GCATC	2 cut(s)	385, 511
MaeI	CTAG	1 cut(s)	377
MaeII	ACGT	1 cut(s)	315
MalI	GATC	3 cut(s)	194, 255, 303
MboI	GATC	3 cut(s)	192, 253, 301
MboII	GAAGA	2 cut(s)	169, 525
MhlI	GDGCHC	2 cut(s)	229, 547
MlsI	TGGCCA	1 cut(s)	279
MluCI	AATT	2 cut(s)	281, 319
MluNI	TGGCCA	1 cut(s)	279
Mox20I	TGGCCA	1 cut(s)	279
Mph1103I	ATGCAT	1 cut(s)	428
MroXI	GAANNNNTTC	2 cut(s)	161, 532
MscI	TGGCCA	1 cut(s)	279
MseI	TTAA	4 cut(s)	318, 383, 456, 587
Msp20I	TGGCCA	1 cut(s)	279
MspA1I	CMGCKG	1 cut(s)	116
MspI	CCGG	2 cut(s)	62, 506
MspR9I	CCNGG	5 cut(s)	21, 45, 62, 249, 693
MvaI	CCWGG	4 cut(s)	21, 45, 249, 693
MwoI	GCNNNNNNNGC	1 cut(s)	122
NciI	CCSGG	1 cut(s)	62
NdeI	CATATG	1 cut(s)	539
NdeII	GATC	3 cut(s)	192, 253, 301
NlaIII	CATG	1 cut(s)	219
NlaIV	GGNNCC	5 cut(s)	29, 66, 353, 361, 595
NsiI	ATGCAT	1 cut(s)	428
PdmI	GAANNNNTTC	2 cut(s)	161, 532
PfoI	TCCNGGA	2 cut(s)	60, 691
PkrI	GCNGC	1 cut(s)	312
PshAI	GACNNNNGTC	1 cut(s)	134
Psp6I	CCWGG	4 cut(s)	19, 43, 247, 691
PspGI	CCWGG	4 cut(s)	19, 43, 247, 691
PspN4I	GGNNCC	5 cut(s)	29, 66, 353, 361, 595
PspPI	GGNCC	2 cut(s)	47, 352
PsrI	GAACNNNNNNTAC	2 cut(s)	414, 446
PvuII	CAGCTG	1 cut(s)	116
RsaI	GTAC	2 cut(s)	208, 673
RsaNI	GTAC	2 cut(s)	207, 672
SaqAI	TTAA	4 cut(s)	318, 383, 456, 587
SatI	GCNGC	1 cut(s)	311
Sau3AI	GATC	3 cut(s)	192, 253, 301
Sau96I	GGNCC	2 cut(s)	47, 352
ScrFI	CCNGG	5 cut(s)	21, 45, 62, 249, 693
SduI	GDGCHC	2 cut(s)	229, 547
SetI	ASST	7 cut(s)	118, 208, 318, 361, 369, 607, 655
SfaNI	GCATC	2 cut(s)	385, 511
SfcI	CTRYAG	1 cut(s)	496
SmlI	CTYRAG	1 cut(s)	143
SmoI	CTYRAG	1 cut(s)	143
Sse9I	AATT	2 cut(s)	281, 319
SspMI	CTAG	1 cut(s)	377
StyD4I	CCNGG	5 cut(s)	19, 43, 60, 247, 691
StyI	CCWWGG	1 cut(s)	355
TaiI	ACGT	1 cut(s)	318
TaqI	TCGA	2 cut(s)	330, 393
TasI	AATT	2 cut(s)	281, 319
Tru1I	TTAA	4 cut(s)	318, 383, 456, 587
Tru9I	TTAA	4 cut(s)	318, 383, 456, 587
TscAI	CASTG	2 cut(s)	406, 625
TseI	GCWGC	1 cut(s)	310
TspDTI	ATGAA	3 cut(s)	98, 453, 579
TspGWI	ACGGA	1 cut(s)	545
TspRI	CASTG	2 cut(s)	406, 625
VneI	GTGCAC	1 cut(s)	225
XagI	CCTNNNNNAGG	1 cut(s)	143
XcmI	CCANNNNNNNNNTGG	1 cut(s)	544
XmnI	GAANNNNTTC	2 cut(s)	161, 532
XspI	CTAG	1 cut(s)	377
Zsp2I	ATGCAT	1 cut(s)	428

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.