Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008485

Physical Location & Seq

Genomic Coordinates Forward (+)

12930870 .. 12935742

Gene Structure 4873 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2112 bp

ATGGATCCGAACATTAAACCCGACTTTGGTTTAATTTGGTGTACCCTCCACGCAAAACCCTCAAAAGTCAAAATCGATCCCCCTTTCAATGTTTCGGGTTTCCGCTTAAACCCTAAAAACCCATCATATCAGGGTTTAAGGTCCCAATGCTCGCCCAGACACCCATGGATTCTCAAGCTTGAAAGCCCGATTCAAAGCTCGAACCTTCAATCAATGGCGGCCTCGAAACTGTCTTCGTGCTTAGCAATGGCTATTGCGGCGGCCGCTATGCCGACGCTCTCCACACGCGCCTACGCCGACGGCGGCGGCTTTCGCTTTTCTCCGTTCTCGTCTTCTTCTTCTTCTTCTTCTTCTTCATCGGCCGCGAAGGACCCAAGTTCGGGTGGGAAGCCGGAATATGAAGCCGAAGAGCCAAGAGGGTCCGGGATGGACCCAGAGGCTTTAGAAAGAGCTGCCAAAGCTCTCAGAGAAATCAATAGCTCTAAGAACTCCAAGCAGATTTTCGACATGATGAGGAAGCAGGAACAAACTCGCCAGACTGAGTTGTCTGCTGAGAAGGCTCATTTTCAAGCTCAGCAATCTCATGCTGACATTGAAAGGCAGAGGAAATTGGCTGAAGAACAAAGAAATCTTGTACAGCAAGATGCACAGCGAAAGGCACAAGTTATGCGATACGAAGATGAACTGGCCAGGAAAAGAATGCAGACAGATCATGAAACCCAGAGGCAGCATAATATTGAGTTGGTTAGGATGCAAGAGGAGTCCTCTATGAGGAAAGAGCGAGCAAGACAGGCTACTGAGGAACAGATCCAAGCTCAGCAGCGTCAGACTGAAAAAGAGAGAGCTGAACTAGAAAGAGAAACCATAAGAGTGAAGGCCATAGCAGAGGCAGAAGGTCGGGCCCATGAAGCAAAATTGACTGAGGACCAAAACAGGAGAATGCTTATCGAACGGATGAATGGTGAAAAGGAAAAATGGCTTGCTGCAATAAATACAGCTTTCAGTCACATTGAAGGGGGTTTTAGAACTTTACTGACTGATAGGAATAAATTGGTTATGACCGTTGGAGGTGCCACAGCATTGGCTGCAGGTGTTTATACAACTAGAGAAGGTTCTAGGGTTCTATGGGGTTATGTCAACCGGATACTTGGGCAGCCATCTTTGATTCGAGAATCATCCATTGCAAGATTTCCAGGTTCAGATATAATTTCTCAAGCAAAGAATAAAGTTTTAAATAATAGTACAGCAGCTGCAGCTTCTGGTCCCCTGAAGAATGGTCTTGGAAATATTGTTCTCCATCCTTCGTTGCAGAGGAGAATAGAACAACTCGCTCGAGCTACAGCAAACACTAAGGCTCATCAGGCACCCTTTCGCAACATGATGTTTTATGGCCCCCCTGGTACTGGCAAAACCATGGTTGCAAGGGAAATAGCTCGAAAATCGGGTTTGGATTATGCTATGATGACTGGAGGAGATGTTGCACCCTTGGGTGCACAGGCTGTTACTAAAATCCATCAGATATTTGATTGGGCAAAAAAATCAAACAAAGGTCTACTACTCTTCATTGATGAGGCAGATGCATTCCTATGCGAGCGTAACAGCACACATATGAGCGAATCTCAGCGGAGTGCTCTAAATGCATTGCTGTTCCGAACTGGAGATCAGTCAAGAGACATAGTTCTTGTGCTTGCTACAAACAGGCCAGGTGATCTTGACAGTGCTATCACTGACCGCATAGATGAAGTGATTGAGTTCCCACTTCCTGGAGAGGAGGAGCGATTTAAGTTATTGAAACTCTATTTGAACAAGTATCTTTCTGGTGAAGAGAACACCTCTAAGTGGGGCTTTCTGTACAAGAAGCAGCCACAAAAGATAACAATGAAGGATCTGTCCAATGATGTGATCCGAGAGGCTGCCCGGAAGACAGAAGGGTTCTCTGGCCGCGAGATTGCTAAACTCATGGCTGGTGTTCAAGCAGCTGTGTACGGGCGCCCAGATTGTGTATTGGACTCCCAATTGTTTGAGGAGATTGTAGATTACAAAGTTGCAGAGCACCACCAGAGGATAAAACTAGCAGCTGAAGGTGGTGATGGGATTTTTGGCCTGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AAA DUF3523

Protein Analysis

703

Amino Acids

78.4

Weight (kDa)

9.24

Isoelectric Point (pI)

49.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATAD3_N	PF12037	130 - 390	1.1e-103	ATPase family AAA domain-containing protein 3, N-terminal
AAA	PF00004	460 - 587	7.3e-28	ATPase family associated with various cellular activities (AAA)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008485)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18330 AT4G36580
fragaria_vesca	FvH4_1g13120 FvH4_1g13120 FvH4_1g13120
malus_domestica	MD02G1145900.v1.1 MD15G1260100.v1.1
prunus_persica	Prupe.7G156000_v2.0.a1 Prupe.7G156000_v2.0.a1
pyrus_communis	pycom02g11540 pycom02g11550 pycom15g22750
rosa_chinensis	RchiOBHm_Chr2g0101291
rosa_laevigata	RLG00000017067
rosa_multiflora	Rmu_co8334191.1_g000001 Rmu_sc0006128.1_g000022
rosa_roxburghii	Rroxscaffold_2G00141430
rosa_rugosa	Rorug02G0099300
rosa_samantha	Rh2AG145800 Rh2BG151200 Rh2CG151700 Rh2DG151300
rosa_wichuraiana	Rw2G011380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1079
AasI	GACNNNNNNGTC	1 cut(s)	544
Acc36I	ACCTGC	1 cut(s)	1079
AccB1I	GGYRCC	3 cut(s)	1070, 1363, 1989
AccB7I	CCANNNNNTGG	1 cut(s)	1763
AccI	GTMKAC	1 cut(s)	1552
AccII	CGCG	3 cut(s)	288, 365, 1944
AclWI	GGATC	5 cut(s)	12, 71, 802, 1893, 1897
AcoI	YGGCCR	4 cut(s)	261, 360, 687, 1939
AcuI	CTGAAG	3 cut(s)	636, 1289, 2100
AcyI	GRCGYC	1 cut(s)	1990
AfaI	GTAC	6 cut(s)	43, 636, 1243, 1402, 1853, 1985
AfiI	CCNNNNNNNGG	7 cut(s)	26, 379, 380, 771, 1403, 1763, 1839
AjnI	CCWGG	5 cut(s)	689, 1192, 1396, 1702, 1762
AjuI	GAANNNNNNNTTGG	2 cut(s)	485, 517
AloI	GAACNNNNNNTCC	2 cut(s)	1275, 1307
Alw21I	GWGCWC	3 cut(s)	1495, 1633, 2055
Alw26I	GTCTC	1 cut(s)	1665
Alw44I	GTGCAC	1 cut(s)	1491
AlwI	GGATC	5 cut(s)	12, 71, 802, 1893, 1897
AlwNI	CAGNNNCTG	2 cut(s)	1250, 1259
Ama87I	CYCGRG	1 cut(s)	1332
ApaI	GGGCCC	1 cut(s)	904
ApaLI	GTGCAC	1 cut(s)	1491
AspLEI	GCGC	2 cut(s)	290, 1992
AspS9I	GGNCC	9 cut(s)	141, 370, 420, 430, 900, 901, 925, 1262, 1391
AsuC2I	CCSGG	2 cut(s)	424, 1918
AsuHPI	GGTGA	4 cut(s)	974, 1718, 1832, 2099
AvaI	CYCGRG	1 cut(s)	1332
AvaII	GGWCC	6 cut(s)	141, 370, 420, 430, 925, 1262
BaeGI	GKGCMC	2 cut(s)	904, 1495
BalI	TGGCCA	1 cut(s)	689
BamHI	GGATCC	1 cut(s)	4
BanI	GGYRCC	3 cut(s)	1070, 1363, 1989
BanII	GRGCYC	1 cut(s)	904
BbsI	GAAGAC	3 cut(s)	225, 324, 1928
Bbv12I	GWGCWC	3 cut(s)	1495, 1633, 2055
BccI	CCATC	6 cut(s)	130, 421, 1165, 1305, 1521, 2084
BceAI	ACGGC	1 cut(s)	316
BciT130I	CCWGG	5 cut(s)	691, 1194, 1398, 1704, 1764
BciVI	GTATCC	1 cut(s)	1137
BcnI	CCSGG	2 cut(s)	424, 1918
BcoDI	GTCTC	1 cut(s)	1665
BfaI	CTAG	4 cut(s)	851, 1104, 1116, 2072
BfmI	CTRYAG	3 cut(s)	1086, 1251, 1338
BfoI	RGCGCY	1 cut(s)	1993
BfuAI	ACCTGC	1 cut(s)	1079
BfuI	GTATCC	1 cut(s)	1137
BlpI	GCTNAGC	3 cut(s)	241, 573, 816
Bme1390I	CCNGG	7 cut(s)	424, 691, 1194, 1398, 1704, 1764, 1918
Bme18I	GGWCC	6 cut(s)	141, 370, 420, 430, 925, 1262
BmeT110I	CYCGRG	1 cut(s)	1332
BmgT120I	GGNCC	9 cut(s)	141, 370, 420, 430, 900, 901, 925, 1262, 1391
BmrFI	CCNGG	7 cut(s)	424, 691, 1194, 1398, 1704, 1764, 1918
BmsI	GCATC	3 cut(s)	634, 741, 1567
BpiI	GAAGAC	3 cut(s)	225, 324, 1928
BplI	GAGNNNNNCTC	6 cut(s)	749, 781, 1603, 1635, 1817, 1849
BpmI	CTGGAG	3 cut(s)	1488, 1677, 1785
Bpu1102I	GCTNAGC	3 cut(s)	241, 573, 816
BpuEI	CTTGAG	2 cut(s)	158, 1197
BpuMI	CCSGG	2 cut(s)	424, 1918
Bsa29I	ATCGAT	1 cut(s)	75
BsaHI	GRCGYC	1 cut(s)	1990
BsaJI	CCNNGG	4 cut(s)	164, 1396, 1413, 1485
BsaWI	WCCGGW	1 cut(s)	1140
BsaXI	ACNNNNNCTCC	2 cut(s)	1461, 1491
Bsc4I	CCNNNNNNNGG	7 cut(s)	26, 379, 380, 771, 1403, 1763, 1839
Bse1I	ACTGG	4 cut(s)	690, 1408, 1471, 1660
Bse3DI	GCAATG	3 cut(s)	252, 1179, 1640
BseBI	CCWGG	5 cut(s)	691, 1194, 1398, 1704, 1764
BseCI	ATCGAT	1 cut(s)	75
BseDI	CCNNGG	4 cut(s)	164, 1396, 1413, 1485
BseGI	GGATG	5 cut(s)	432, 756, 960, 1175, 1297
BseLI	CCNNNNNNNGG	7 cut(s)	26, 379, 380, 771, 1403, 1763, 1839
BseMI	GCAATG	3 cut(s)	252, 1179, 1640
BseMII	CTCAG	8 cut(s)	478, 531, 543, 587, 789, 830, 912, 1634
BseNI	ACTGG	4 cut(s)	690, 1408, 1471, 1660
BseRI	GAGGAG	6 cut(s)	773, 1327, 1485, 1784, 1787, 2039
BseSI	GKGCMC	2 cut(s)	904, 1495
BseX3I	CGGCCG	2 cut(s)	261, 360
Bsh1236I	CGCG	3 cut(s)	288, 365, 1944
Bsh1285I	CGRYCG	2 cut(s)	264, 363
BshNI	GGYRCC	3 cut(s)	1070, 1363, 1989
BshVI	ATCGAT	1 cut(s)	75
BsiEI	CGRYCG	2 cut(s)	264, 363
BsiHKAI	GWGCWC	3 cut(s)	1495, 1633, 2055
BsiHKCI	CYCGRG	1 cut(s)	1332
BsiSI	CCGG	4 cut(s)	392, 423, 1141, 1918
BslFI	GGGAC	2 cut(s)	127, 1248
BslI	CCNNNNNNNGG	7 cut(s)	26, 379, 380, 771, 1403, 1763, 1839
BsmAI	GTCTC	1 cut(s)	1665
BsmFI	GGGAC	2 cut(s)	127, 1248
BsmI	GAATGC	3 cut(s)	705, 945, 1580
BsoBI	CYCGRG	1 cut(s)	1332
Bsp120I	GGGCCC	1 cut(s)	900
Bsp1286I	GDGCHC	4 cut(s)	904, 1495, 1633, 2055
Bsp1407I	TGTACA	2 cut(s)	634, 1851
Bsp143I	GATC	8 cut(s)	4, 76, 709, 807, 1660, 1708, 1885, 1902
Bsp1720I	GCTNAGC	3 cut(s)	241, 573, 816
Bsp19I	CCATGG	2 cut(s)	164, 1413
BspCNI	CTCAG	8 cut(s)	477, 532, 544, 586, 790, 829, 913, 1633
BspDI	ATCGAT	1 cut(s)	75
BspFNI	CGCG	3 cut(s)	288, 365, 1944
BspHI	TCATGA	1 cut(s)	712
BspMAI	CTGCAG	2 cut(s)	1090, 1255
BspMI	ACCTGC	1 cut(s)	1079
BspPI	GGATC	5 cut(s)	12, 71, 802, 1893, 1897
BspQI	GCTCTTC	1 cut(s)	402
BspT107I	GGYRCC	3 cut(s)	1070, 1363, 1989
BsrDI	GCAATG	3 cut(s)	252, 1179, 1640
BsrGI	TGTACA	2 cut(s)	634, 1851
BsrI	ACTGG	4 cut(s)	690, 1408, 1471, 1660
BssECI	CCNNGG	4 cut(s)	164, 1396, 1413, 1485
BssMI	GATC	8 cut(s)	4, 76, 709, 807, 1660, 1708, 1885, 1902
BssNI	GRCGYC	1 cut(s)	1990
BssT1I	CCWWGG	3 cut(s)	164, 1413, 1485
Bst2UI	CCWGG	5 cut(s)	691, 1194, 1398, 1704, 1764
Bst4CI	ACNGT	3 cut(s)	231, 1063, 1718
Bst6I	CTCTTC	3 cut(s)	402, 1565, 1818
BstACI	GRCGYC	1 cut(s)	1990
BstAPI	GCANNNNNTGC	1 cut(s)	1085
BstAUI	TGTACA	2 cut(s)	634, 1851
BstC8I	GCNNGC	5 cut(s)	152, 783, 981, 1592, 1689
BstDSI	CCRYGG	2 cut(s)	164, 1413
BstENI	CCTNNNNNAGG	1 cut(s)	769
BstF5I	GGATG	5 cut(s)	432, 756, 960, 1175, 1297
BstFNI	CGCG	3 cut(s)	288, 365, 1944
BstH2I	RGCGCY	1 cut(s)	1993
BstHHI	GCGC	2 cut(s)	290, 1992
BstKTI	GATC	8 cut(s)	7, 79, 712, 810, 1663, 1711, 1888, 1905
BstMAI	GTCTC	1 cut(s)	1665
BstMBI	GATC	8 cut(s)	4, 76, 709, 807, 1660, 1708, 1885, 1902
BstMCI	CGRYCG	2 cut(s)	264, 363
BstNI	CCWGG	5 cut(s)	691, 1194, 1398, 1704, 1764
BstSCI	CCNGG	7 cut(s)	422, 689, 1192, 1396, 1702, 1762, 1916
BstSFI	CTRYAG	3 cut(s)	1086, 1251, 1338
BstSLI	GKGCMC	2 cut(s)	904, 1495
BstUI	CGCG	3 cut(s)	288, 365, 1944
BstV2I	GAAGAC	3 cut(s)	225, 324, 1928
BstX2I	RGATCY	3 cut(s)	4, 807, 1885
BstXI	CCANNNNNNTGG	1 cut(s)	1081
BstYI	RGATCY	3 cut(s)	4, 807, 1885
BstZI	CGGCCG	2 cut(s)	261, 360
Bsu15I	ATCGAT	1 cut(s)	75
BsuI	GTATCC	1 cut(s)	1137
BsuTUI	ATCGAT	1 cut(s)	75
BtgI	CCRYGG	2 cut(s)	164, 1413
BtsCI	GGATG	5 cut(s)	432, 756, 960, 1175, 1297
BtsIMutI	CAGTG	2 cut(s)	1723, 1725
BveI	ACCTGC	1 cut(s)	1079
Cac8I	GCNNGC	5 cut(s)	152, 783, 981, 1592, 1689
CaiI	CAGNNNCTG	2 cut(s)	1250, 1259
CciI	TCATGA	1 cut(s)	712
CciNI	GCGGCCGC	1 cut(s)	261
CfoI	GCGC	2 cut(s)	290, 1992
Cfr13I	GGNCC	9 cut(s)	141, 370, 420, 430, 900, 901, 925, 1262, 1391
ClaI	ATCGAT	1 cut(s)	75
CseI	GACGC	2 cut(s)	283, 812
Csp6I	GTAC	6 cut(s)	42, 635, 1242, 1401, 1852, 1984
CviAII	CATG	8 cut(s)	165, 508, 584, 713, 905, 1378, 1414, 1960
CviQI	GTAC	6 cut(s)	42, 635, 1242, 1401, 1852, 1984
DinI	GGCGCC	1 cut(s)	1991
DpnI	GATC	8 cut(s)	6, 78, 711, 809, 1662, 1710, 1887, 1904
DpnII	GATC	8 cut(s)	4, 76, 709, 807, 1660, 1708, 1885, 1902
DraI	TTTAAA	1 cut(s)	1233
DrdI	GACNNNNNNGTC	1 cut(s)	544
DseDI	GACNNNNNNGTC	1 cut(s)	544
EaeI	YGGCCR	4 cut(s)	261, 360, 687, 1939
EagI	CGGCCG	2 cut(s)	261, 360
Eam1104I	CTCTTC	3 cut(s)	402, 1565, 1818
EarI	CTCTTC	3 cut(s)	402, 1565, 1818
EclXI	CGGCCG	2 cut(s)	261, 360
Eco130I	CCWWGG	3 cut(s)	164, 1413, 1485
Eco24I	GRGCYC	1 cut(s)	904
Eco47I	GGWCC	6 cut(s)	141, 370, 420, 430, 925, 1262
Eco52I	CGGCCG	2 cut(s)	261, 360
Eco57I	CTGAAG	3 cut(s)	636, 1289, 2100
Eco88I	CYCGRG	1 cut(s)	1332
EcoNI	CCTNNNNNAGG	1 cut(s)	769
EcoO109I	RGGNCCY	2 cut(s)	141, 370
EcoRII	CCWGG	5 cut(s)	689, 1192, 1396, 1702, 1762
EcoT14I	CCWWGG	3 cut(s)	164, 1413, 1485
EcoT22I	ATGCAT	2 cut(s)	1582, 1642
EcoT38I	GRGCYC	1 cut(s)	904
EgeI	GGCGCC	1 cut(s)	1991
EheI	GGCGCC	1 cut(s)	1991
ErhI	CCWWGG	3 cut(s)	164, 1413, 1485
FaeI	CATG	8 cut(s)	168, 511, 587, 716, 908, 1381, 1417, 1963
FalI	AAGNNNNNCTT	2 cut(s)	1829, 1861
FaqI	GGGAC	2 cut(s)	127, 1248
FatI	CATG	8 cut(s)	164, 507, 583, 712, 904, 1377, 1413, 1959
FauNDI	CATATG	1 cut(s)	1608
FblI	GTMKAC	1 cut(s)	1552
FokI	GGATG	5 cut(s)	439, 763, 967, 1162, 1284
FriOI	GRGCYC	1 cut(s)	904
FspBI	CTAG	4 cut(s)	851, 1104, 1116, 2072
GlaI	GCGC	2 cut(s)	289, 1991
GsuI	CTGGAG	3 cut(s)	1488, 1677, 1785
HaeII	RGCGCY	1 cut(s)	1993
HapII	CCGG	4 cut(s)	392, 423, 1141, 1918
HgaI	GACGC	2 cut(s)	283, 812
HhaI	GCGC	2 cut(s)	290, 1992
Hin1I	GRCGYC	1 cut(s)	1990
Hin1II	CATG	8 cut(s)	168, 511, 587, 716, 908, 1381, 1417, 1963
Hin6I	GCGC	2 cut(s)	288, 1990
HinP1I	GCGC	2 cut(s)	288, 1990
HincII	GTYRAC	1 cut(s)	1138
HindII	GTYRAC	1 cut(s)	1138
HindIII	AAGCTT	1 cut(s)	176
HinfI	GANTC	7 cut(s)	169, 190, 761, 1165, 1172, 1616, 2009
HpaII	CCGG	4 cut(s)	392, 423, 1141, 1918
HphI	GGTGA	4 cut(s)	974, 1718, 1832, 2099
Hpy166II	GTNNAC	5 cut(s)	42, 1138, 1493, 1553, 1984
Hpy188I	TCNGA	7 cut(s)	9, 467, 828, 1201, 1518, 1652, 1907
Hpy188III	TCNNGA	4 cut(s)	713, 1169, 1668, 1712
Hpy8I	GTNNAC	5 cut(s)	42, 1138, 1493, 1553, 1984
Hpy99I	CGWCG	2 cut(s)	277, 302
HpyCH4III	ACNGT	3 cut(s)	231, 1063, 1718
Hsp92I	GRCGYC	1 cut(s)	1990
Hsp92II	CATG	8 cut(s)	168, 511, 587, 716, 908, 1381, 1417, 1963
HspAI	GCGC	2 cut(s)	288, 1990
KasI	GGCGCC	1 cut(s)	1989
Kzo9I	GATC	8 cut(s)	4, 76, 709, 807, 1660, 1708, 1885, 1902
LguI	GCTCTTC	1 cut(s)	402
LmnI	GCTCC	1 cut(s)	1774
LweI	GCATC	3 cut(s)	634, 741, 1567
MaeI	CTAG	4 cut(s)	851, 1104, 1116, 2072
MaeIII	GTNAC	3 cut(s)	1004, 1501, 1595
MalI	GATC	8 cut(s)	6, 78, 711, 809, 1662, 1710, 1887, 1904
MboI	GATC	8 cut(s)	4, 76, 709, 807, 1660, 1708, 1885, 1902
MfeI	CAATTG	1 cut(s)	2015
MflI	RGATCY	3 cut(s)	4, 807, 1885
MhlI	GDGCHC	4 cut(s)	904, 1495, 1633, 2055
MlsI	TGGCCA	1 cut(s)	689
MluCI	AATT	6 cut(s)	33, 608, 914, 1049, 1206, 2015
MluNI	TGGCCA	1 cut(s)	689
Mly113I	GGCGCC	1 cut(s)	1990
MlyI	GAGTC	2 cut(s)	770, 2003
MmeI	TCCRAC	1 cut(s)	1045
Mox20I	TGGCCA	1 cut(s)	689
Mph1103I	ATGCAT	2 cut(s)	1582, 1642
MscI	TGGCCA	1 cut(s)	689
MseI	TTAA	6 cut(s)	15, 32, 107, 137, 1232, 1782
MslI	CAYNNNNRTG	3 cut(s)	869, 1585, 1607
Msp20I	TGGCCA	1 cut(s)	689
MspA1I	CMGCKG	4 cut(s)	1250, 1624, 1979, 2078
MspI	CCGG	4 cut(s)	392, 423, 1141, 1918
MspR9I	CCNGG	7 cut(s)	424, 691, 1194, 1398, 1704, 1764, 1918
MunI	CAATTG	1 cut(s)	2015
Mva1269I	GAATGC	3 cut(s)	705, 945, 1580
MvaI	CCWGG	5 cut(s)	691, 1194, 1398, 1704, 1764
MvnI	CGCG	3 cut(s)	288, 365, 1944
NarI	GGCGCC	1 cut(s)	1990
NciI	CCSGG	2 cut(s)	424, 1918
NcoI	CCATGG	2 cut(s)	164, 1413
NdeI	CATATG	1 cut(s)	1608
NdeII	GATC	8 cut(s)	4, 76, 709, 807, 1660, 1708, 1885, 1902
NlaIII	CATG	8 cut(s)	168, 511, 587, 716, 908, 1381, 1417, 1963
NmuCI	GTSAC	1 cut(s)	1004
NotI	GCGGCCGC	1 cut(s)	261
NsiI	ATGCAT	2 cut(s)	1582, 1642
PaeR7I	CTCGAG	1 cut(s)	1332
PagI	TCATGA	1 cut(s)	712
PaqCI	CACCTGC	1 cut(s)	1079
PciSI	GCTCTTC	1 cut(s)	402
PctI	GAATGC	3 cut(s)	705, 945, 1580
PfeI	GAWTC	5 cut(s)	169, 190, 1165, 1172, 1616
PflMI	CCANNNNNTGG	1 cut(s)	1763
PfoI	TCCNGGA	2 cut(s)	422, 1762
PleI	GAGTC	2 cut(s)	769, 2003
PluTI	GGCGCC	1 cut(s)	1993
PpsI	GAGTC	2 cut(s)	769, 2003
PpuMI	RGGWCCY	2 cut(s)	141, 370
Psp5II	RGGWCCY	2 cut(s)	141, 370
Psp6I	CCWGG	5 cut(s)	689, 1192, 1396, 1702, 1762
PspGI	CCWGG	5 cut(s)	689, 1192, 1396, 1702, 1762
PspOMI	GGGCCC	1 cut(s)	900
PspPI	GGNCC	9 cut(s)	141, 370, 420, 430, 900, 901, 925, 1262, 1391
PspPPI	RGGWCCY	2 cut(s)	141, 370
PspXI	VCTCGAGB	1 cut(s)	1332
PstI	CTGCAG	2 cut(s)	1090, 1255
PstNI	CAGNNNCTG	2 cut(s)	1250, 1259
PsuI	RGATCY	3 cut(s)	4, 807, 1885
PvuII	CAGCTG	3 cut(s)	1250, 1979, 2078
RsaI	GTAC	6 cut(s)	43, 636, 1243, 1402, 1853, 1985
RsaNI	GTAC	6 cut(s)	42, 635, 1242, 1401, 1852, 1984
RseI	CAYNNNNRTG	3 cut(s)	869, 1585, 1607
SapI	GCTCTTC	1 cut(s)	402
SaqAI	TTAA	6 cut(s)	15, 32, 107, 137, 1232, 1782
Sau3AI	GATC	8 cut(s)	4, 76, 709, 807, 1660, 1708, 1885, 1902
Sau96I	GGNCC	9 cut(s)	141, 370, 420, 430, 900, 901, 925, 1262, 1391
SchI	GAGTC	2 cut(s)	770, 2003
ScrFI	CCNGG	7 cut(s)	424, 691, 1194, 1398, 1704, 1764, 1918
SduI	GDGCHC	4 cut(s)	904, 1495, 1633, 2055
SfaNI	GCATC	3 cut(s)	634, 741, 1567
SfcI	CTRYAG	3 cut(s)	1086, 1251, 1338
SfoI	GGCGCC	1 cut(s)	1991
Sfr274I	CTCGAG	1 cut(s)	1332
SinI	GGWCC	6 cut(s)	141, 370, 420, 430, 925, 1262
SlaI	CTCGAG	1 cut(s)	1332
SmiMI	CAYNNNNRTG	3 cut(s)	869, 1585, 1607
SmlI	CTYRAG	3 cut(s)	173, 1212, 1332
SmoI	CTYRAG	3 cut(s)	173, 1212, 1332
Sse9I	AATT	6 cut(s)	33, 608, 914, 1049, 1206, 2015
SspDI	GGCGCC	1 cut(s)	1989
SspI	AATATT	2 cut(s)	736, 1288
SspMI	CTAG	4 cut(s)	851, 1104, 1116, 2072
StyD4I	CCNGG	7 cut(s)	422, 689, 1192, 1396, 1702, 1762, 1916
StyI	CCWWGG	3 cut(s)	164, 1413, 1485
TaaI	ACNGT	3 cut(s)	231, 1063, 1718
TaqI	TCGA	8 cut(s)	75, 200, 224, 504, 948, 1168, 1333, 1435
TasI	AATT	6 cut(s)	33, 608, 914, 1049, 1206, 2015
TatI	WGTACW	3 cut(s)	634, 1241, 1851
TauI	GCSGC	8 cut(s)	221, 260, 263, 266, 306, 309, 365, 1944
TfiI	GAWTC	5 cut(s)	169, 190, 1165, 1172, 1616
Tru1I	TTAA	6 cut(s)	15, 32, 107, 137, 1232, 1782
Tru9I	TTAA	6 cut(s)	15, 32, 107, 137, 1232, 1782
TscAI	CASTG	2 cut(s)	1723, 1732
TseFI	GTSAC	1 cut(s)	1004
Tsp45I	GTSAC	1 cut(s)	1004
TspDTI	ATGAA	9 cut(s)	345, 414, 696, 729, 921, 971, 1552, 1755, 1895
TspGWI	ACGGA	2 cut(s)	312, 967
TspRI	CASTG	2 cut(s)	1723, 1732
Van91I	CCANNNNNTGG	1 cut(s)	1763
VneI	GTGCAC	1 cut(s)	1491
VpaK11BI	GGWCC	6 cut(s)	141, 370, 420, 430, 925, 1262
XagI	CCTNNNNNAGG	1 cut(s)	769
XhoI	CTCGAG	1 cut(s)	1332
XmiI	GTMKAC	1 cut(s)	1552
XspI	CTAG	4 cut(s)	851, 1104, 1116, 2072
Zsp2I	ATGCAT	2 cut(s)	1582, 1642

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.