RchiOBHm_Chr2g0104481

Belongs to the bacterial ribosomal protein bL17 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0017319
Physical Location & Seq
Forward (+)
15825157 .. 15827382
2226 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 267 bp
ATGAAAAGAAGTTTGGTATCAACCCCTAACAAAAATCGAAAGAGATCTATACTGAGGACGATGGTGTTGCAGTTCGTGAAGCATGAGTGCATTGAAACCGCTGTTGCCAAGGCAAAAGAGGTTCGACATCAGGCTGATAGAGTGGTGCAGCGTGGAAAAGATGGTTCACTCGCTGCAGCGAGGAGTTATGTAGAAAATAGGAAGAAACTCTTGGTTTCATTTAAATATGTATCTACATTTTTGTTTGTGCTATTGTTTAATGTTTGA

Protein Analysis

88

Amino Acids

10.15

Weight (kDa)

10.83

Isoelectric Point (pI)

49.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L17 PF01196 17 - 65 2.6e-10 Ribosomal protein L17
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 99
AgsI TTSAA 1 cut(s) 95
AjuI GAANNNNNNNTTGG 3 cut(s) 28, 194, 226
ApeKI GCWGC 3 cut(s) 148, 173, 176
BbvI GCAGC 3 cut(s) 160, 160, 188
BccI CCATC 2 cut(s) 55, 155
BcgI CGANNNNNNTGC 2 cut(s) 49, 83
BfmI CTRYAG 1 cut(s) 174
BglII AGATCT 1 cut(s) 44
BisI GCNGC 3 cut(s) 149, 174, 177
BlsI GCNGC 3 cut(s) 150, 175, 178
BsaJI CCNNGG 1 cut(s) 108
BseDI CCNNGG 1 cut(s) 108
BseMII CTCAG 1 cut(s) 44
BseRI GAGGAG 1 cut(s) 196
BseXI GCAGC 3 cut(s) 160, 160, 188
BsgI GTGCAG 1 cut(s) 167
Bsp143I GATC 1 cut(s) 44
BspACI CCGC 1 cut(s) 99
BspCNI CTCAG 1 cut(s) 45
BspMAI CTGCAG 1 cut(s) 178
BssECI CCNNGG 1 cut(s) 108
BssMI GATC 1 cut(s) 44
BssT1I CCWWGG 1 cut(s) 108
BstDEI CTNAG 1 cut(s) 53
BstKTI GATC 1 cut(s) 47
BstMBI GATC 1 cut(s) 44
BstSFI CTRYAG 1 cut(s) 174
BstV1I GCAGC 3 cut(s) 160, 160, 188
BstX2I RGATCY 1 cut(s) 44
BstYI RGATCY 1 cut(s) 44
CviAII CATG 1 cut(s) 83
CviJI RGCY 1 cut(s) 134
CviKI_1 RGCY 1 cut(s) 134
DdeI CTNAG 1 cut(s) 53
DpnI GATC 1 cut(s) 46
DpnII GATC 1 cut(s) 44
DraI TTTAAA 1 cut(s) 223
Eco130I CCWWGG 1 cut(s) 108
EcoT14I CCWWGG 1 cut(s) 108
ErhI CCWWGG 1 cut(s) 108
FaeI CATG 1 cut(s) 86
FaiI YATR 4 cut(s) 50, 84, 189, 228
FalI AAGNNNNNCTT 2 cut(s) 194, 226
FatI CATG 1 cut(s) 82
Fnu4HI GCNGC 3 cut(s) 149, 174, 177
Fsp4HI GCNGC 3 cut(s) 149, 174, 177
GluI GCNGC 3 cut(s) 149, 174, 177
Hin1II CATG 1 cut(s) 86
Hpy166II GTNNAC 1 cut(s) 167
Hpy188III TCNNGA 1 cut(s) 76
Hpy8I GTNNAC 1 cut(s) 167
HpyCH4V TGCA 4 cut(s) 70, 90, 148, 176
HpyF3I CTNAG 1 cut(s) 53
Hsp92II CATG 1 cut(s) 86
Kzo9I GATC 1 cut(s) 44
LpnPI CCDG 1 cut(s) 116
Lsp1109I GCAGC 3 cut(s) 160, 160, 188
MalI GATC 1 cut(s) 46
MboI GATC 1 cut(s) 44
MboII GAAGA 1 cut(s) 214
MflI RGATCY 1 cut(s) 44
MnlI CCTC 3 cut(s) 48, 112, 174
MseI TTAA 2 cut(s) 222, 258
MspA1I CMGCKG 1 cut(s) 101
NdeII GATC 1 cut(s) 44
NlaIII CATG 1 cut(s) 86
PkrI GCNGC 3 cut(s) 150, 175, 178
PstI CTGCAG 1 cut(s) 178
PsuI RGATCY 1 cut(s) 44
SaqAI TTAA 2 cut(s) 222, 258
SatI GCNGC 3 cut(s) 149, 174, 177
Sau3AI GATC 1 cut(s) 44
SetI ASST 1 cut(s) 123
SfcI CTRYAG 1 cut(s) 174
SgeI CNNG 8 cut(s) 88, 95, 121, 143, 164, 182, 192, 223
SmiI ATTTAAAT 1 cut(s) 223
SsiI CCGC 1 cut(s) 99
StyI CCWWGG 1 cut(s) 108
SwaI ATTTAAAT 1 cut(s) 223
TaqI TCGA 2 cut(s) 37, 124
Tru1I TTAA 2 cut(s) 222, 258
Tru9I TTAA 2 cut(s) 222, 258
TseI GCWGC 3 cut(s) 148, 173, 176
TspDTI ATGAA 2 cut(s) 17, 207
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.