Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0009080

Physical Location & Seq

Genomic Coordinates Forward (+)

19689992 .. 19694815

Gene Structure 4824 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2613 bp

ATGGAAGCTCTGCAAGGAGCCCTCCCTCAAATCCCAAACCCCCAATTCGAACCCAACACTGATAAAATCAAACGCAACCTCACCAACAAAGGCGTACACCCAACTCCCAAAATCGTCCACACTCTCCGCAAGAAACAAATCCAGAAACACAACCGCCTCAACGAACAAGACCCACCTCTCTCCCAGTCCCAAAGCCAAGCGCTTTCCGAAGAAACCCATTTCCAAACCCTGAAAGCCGAGTACAGAAGCTTCACCAGAGCCGTGAAATCAAAGAATGGTGGCGGTGAATTGACGGTTGGGATGCCTTGGGAGAGAGTGGAGAGAATTGGGTTCCGGGAGCTGGCGAGTAGTAGCGGTGAGTATGGTGGAGAGAAGCTGAAGAAGGAGGAGTTGAATGCATTGAGGGAAATGTTCGAAACCCGAAAAAGGGAGGAGCTGAAATGGGTGTTGGATGATGATGTGGAGATAAAAGAGGAGTGGTTTGATGGTGAGAATAGGGTGTGGGACCCGACAAAGCGGCGGCGCGGCGAGGGGGAGGTGATCCAGTTTCTTGTTGAGAGGCTTAGTGGTACTGAGTTTACAATGAGGGACTGGAAGCTTTCGAGGATGATGAAGCAGTCAGGTTTGGAGTTCACTGAGGGTCAGGTTTTGAAGATTTTGAATGGGCTTGGTGCTAAGAAATGTTGGAAGCAGGCATTGTCTGTGGTGGAATGGGTTTATAAGGACAGGGGTAATAAACACTGCAAAAGCAGGTTTGTATACACGAAACTTTTGGCAATTCTTGGGAAGGCACGAAGGCCCCAGGAAGCTCTTGACATTTTCAACATGATGCGGGGAGATTGTCATATGTATCCAGATATTGCTGCCTATCATTGCATTGCTGTTACACTCGGTCAAACGGGTCGTCTGAAGGAATTGCTGAAAGTTATTGAATGCATGAGGCAGAAACCTGTCAAAATAGCTAGAAATATGTTTCGTAACTGGGACCCCATCCTTGAACCCAATGTAGTTGTATATAATGCTATACTGAACGCTTGTGTTCAATCCCGTCAGTGGAAGAGTGTATATTGGGTGTTCAACCAGTTGAGAAAGAGTGGTCTGAAACCTAATGGAGCAACGTATGGGCTTGCTATGGAGGTAATGCTGCAGTCTGGAAAGTATGACCTCGTGCATGAATTATTTAGAAAAATGAAAAAAAGCGGAGAAGCTCCAAAAGCTCTTACCTATAAAGTTATTGTTAGAGCTTTATGGTGTGAAGGAAAAGTGAATGAAGCTGTGGAAGCAGTCAGGGACATGGAACGAAGAGGAGTGGTTGGGACAAGTGGTGTATATTACGAGTTAGCTTGCTGCCTTTGCAAGAGTGGGAGGTGGCAGGATGCTCTGTTACAGGTTGAGAAGATGAAACATGTATCTAATACTAAACCTTTGGAGGTCACCTTCACAGGCATGATAAGGTCTTCCATGGAGGGTGGACATATTGATGACTGTATATCCATATTTGAACACATGAAGAACCATTGCACCCCTAACATAGGGACAATAAATACAATGTTGAAAGTATTTGGACGCACCGATATGTTTTCCAAAGCTAAAGAATTGTTTGAAGAAACTAAGGCTGCTGAATCTGATTCTGACCCTTCACTGGAAGGTGGTGGTAGTTCTCTTGTGCCCGATGAGTACACATATACCTCAATGCTCAAGGCATCTGCCAGTGCTCTGCAATGGGAGTACTTTGAATATGTGTACAAGGAGATGGCTCTCTCGGGATATAAAATGGATCAAAGTAAAAATGCATCAATACTCGTAGAAGCATCCAGAGCCGGGAAGGGGTATCTACTAGAGCATGCATTTGACACCACACTGGAAGCCGGTGAAATTCCCCATCAATTGTTCTTTATTGAAATGGTATATCAAGCTACAGCTCGACATGATTACAAGAGAGCGGCAACTCTGGTTAATACAATGGCTTATGCCCCATTTCAAGTCAGCGAAAGGCAGTGGACAGATGTTTTTGAGAAAAATGAAGACGGGATCAGTCAGGATGGTTTAACGAAACTGCTGGATGCTCTACAGCACTGTGATGTAACATCGGAAGCCACGCTTTTAAACTTAAAAAGATCTGTGCAAAGTCTCTGCCGGTCGTATACATCGAGAGACTTCTCAAATTCTATGTCGGAATCATCTTTGGATGATAATGATGAGGGATTTGATGATAATGAAGGGCTCATCATGCCAAATCATTCTTTAGAATATATTGACGGTAAGCCCAAGCCTGGCACTGCTCCTCCTGATGACAGTAGTGATGCTCCTTTCAGTGAATTTCCTCATCGAAATAGTACCCAAAGAGGTGTTGCCGCTGATATAGAGACACCTTGCAGGCCTTTGGATTATATTTCTGATGAAGATGGACTAGACTCGACAGAAATCGATGAGGAAATCGAAGCACTGATAAGTAAGGATGATTCTCACGAATCTCATTCGCCCTCGCCAAAGGAAATAATGAAAGATTGGAAGGAAAGAAGGAAAAAGCATGGGATACTCATGCCCTTTCAACTCGGCCAAAAGCAAGTCAAAGTTGCTTCTTCAGCCAGATCACTTCAGGAGAGGGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Arf PPR

Protein Analysis

870

Amino Acids

99.13

Weight (kDa)

6.37

Isoelectric Point (pI)

46.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	332 - 379	1.7e-06	Pentatricopeptide repeat domain
PPR_2	PF13041	334 - 374	4.5e-09	PPR repeat family
PPR_long	PF17177	335 - 440	4.8e-07	Pentacotripeptide-repeat region of PRORP

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009080)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G67570
fragaria_vesca	FvH4_1g17780 FvH4_1g17780 FvH4_1g17780 FvH4_1g17891
malus_domestica	MD02G1186800.v1.1
prunus_persica	Prupe.6G219900_v2.0.a1 Prupe.6G219900_v2.0.a1 Prupe.6G219900_v2.0.a1 Prupe.6G219900_v2.0.a1 Prupe.6G219900_v2.0.a1
pyrus_communis	pycom02g15180
rosa_chinensis	RchiOBHm_Chr2g0108231
rosa_laevigata	RLG00000017648
rosa_multiflora	Rmu_sc0007406.1_g000010
rosa_roxburghii	Rroxscaffold_2G00135470
rosa_rugosa	Rorug02G0151200
rosa_samantha	Rh2AG199800 Rh2BG212500 Rh2CG204500 Rh2DG207400
rosa_wichuraiana	Rw2G015900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	720
Acc36I	ACCTGC	1 cut(s)	741
AccBSI	CCGCTC	1 cut(s)	1943
AccI	GTMKAC	2 cut(s)	759, 2144
AccII	CGCG	1 cut(s)	525
AclWI	GGATC	3 cut(s)	535, 1785, 2039
AcoI	YGGCCR	1 cut(s)	2557
AcsI	RAATTY	3 cut(s)	1875, 2164, 2318
AcuI	CTGAAG	4 cut(s)	398, 929, 2568, 2582
AfaI	GTAC	7 cut(s)	96, 242, 571, 1679, 1730, 1745, 2338
AfeI	AGCGCT	1 cut(s)	201
AfiI	CCNNNNNNNGG	9 cut(s)	340, 426, 427, 1053, 1532, 1642, 1821, 1827, 2273
AflIII	ACRYGT	1 cut(s)	1405
AjnI	CCWGG	2 cut(s)	801, 2272
AjuI	GAANNNNNNNTTGG	4 cut(s)	279, 311, 431, 463
Alw21I	GWGCWC	1 cut(s)	1717
Alw26I	GTCTC	3 cut(s)	2135, 2148, 2360
AlwI	GGATC	3 cut(s)	535, 1785, 2039
Ama87I	CYCGRG	1 cut(s)	1762
Aor51HI	AGCGCT	1 cut(s)	201
AoxI	GGCC	3 cut(s)	797, 2378, 2557
ApeKI	GCWGC	4 cut(s)	863, 1144, 1347, 1616
ApoI	RAATTY	3 cut(s)	1875, 2164, 2318
ArsI	GACNNNNNNTTYG	4 cut(s)	889, 921, 2156, 2188
AspLEI	GCGC	2 cut(s)	202, 525
AspS9I	GGNCC	3 cut(s)	505, 798, 985
AsuC2I	CCSGG	2 cut(s)	335, 1822
AsuHPI	GGTGA	8 cut(s)	73, 244, 296, 368, 500, 550, 1426, 1883
AsuII	TTCGAA	2 cut(s)	48, 414
AvaI	CYCGRG	1 cut(s)	1762
AvaII	GGWCC	2 cut(s)	505, 985
BaeGI	GKGCMC	1 cut(s)	1671
BanII	GRGCYC	2 cut(s)	22, 2226
BarI	GAAGNNNNNNTAC	2 cut(s)	233, 265
BauI	CACGAG	1 cut(s)	1166
BbsI	GAAGAC	2 cut(s)	1449, 2031
Bbv12I	GWGCWC	1 cut(s)	1717
BbvI	GCAGC	4 cut(s)	850, 1131, 1334, 1603
BccI	CCATC	6 cut(s)	479, 998, 1747, 1890, 2036, 2399
BceAI	ACGGC	1 cut(s)	245
BciT130I	CCWGG	2 cut(s)	803, 2274
BciVI	GTATCC	2 cut(s)	861, 2529
BcnI	CCSGG	2 cut(s)	335, 1822
BcoDI	GTCTC	3 cut(s)	2135, 2148, 2360
BfaI	CTAG	3 cut(s)	963, 1838, 2411
BfmI	CTRYAG	3 cut(s)	1145, 1917, 2069
BfoI	RGCGCY	1 cut(s)	203
BfuAI	ACCTGC	1 cut(s)	741
BfuI	GTATCC	2 cut(s)	861, 2529
BglII	AGATCT	1 cut(s)	2117
BisI	GCNGC	9 cut(s)	518, 521, 526, 864, 1145, 1348, 1617, 1944, 2355
BlsI	GCNGC	9 cut(s)	519, 522, 527, 865, 1146, 1349, 1618, 1945, 2356
BmcAI	AGTACT	1 cut(s)	1730
Bme1390I	CCNGG	4 cut(s)	335, 803, 1822, 2274
Bme18I	GGWCC	2 cut(s)	505, 985
BmeT110I	CYCGRG	1 cut(s)	1762
BmgT120I	GGNCC	3 cut(s)	505, 798, 985
BmiI	GGNNCC	7 cut(s)	19, 332, 506, 507, 800, 986, 987
BmrFI	CCNGG	4 cut(s)	335, 803, 1822, 2274
BmrI	ACTGGG	2 cut(s)	178, 991
BmsI	GCATC	8 cut(s)	291, 819, 1366, 1712, 1802, 1820, 2053, 2293
BmuI	ACTGGG	2 cut(s)	178, 991
BpiI	GAAGAC	2 cut(s)	1449, 2031
Bpu14I	TTCGAA	2 cut(s)	48, 414
BpuEI	CTTGAG	1 cut(s)	1682
BpuMI	CCSGG	2 cut(s)	335, 1822
Bsa29I	ATCGAT	1 cut(s)	2427
BsaJI	CCNNGG	3 cut(s)	305, 801, 1461
BsaXI	ACNNNNNCTCC	2 cut(s)	2269, 2299
Bsc4I	CCNNNNNNNGG	9 cut(s)	340, 426, 427, 1053, 1532, 1642, 1821, 1827, 2273
Bse118I	RCCGGY	2 cut(s)	1868, 2136
Bse1I	ACTGG	8 cut(s)	184, 544, 596, 986, 1081, 1647, 1710, 1866
Bse3DI	GCAATG	4 cut(s)	871, 876, 1516, 1727
BseBI	CCWGG	2 cut(s)	803, 2274
BseCI	ATCGAT	1 cut(s)	2427
BseDI	CCNNGG	3 cut(s)	305, 801, 1461
BseLI	CCNNNNNNNGG	9 cut(s)	340, 426, 427, 1053, 1532, 1642, 1821, 1827, 2273
BseMI	GCAATG	4 cut(s)	871, 876, 1516, 1727
BseMII	CTCAG	2 cut(s)	564, 627
BseNI	ACTGG	8 cut(s)	184, 544, 596, 986, 1081, 1647, 1710, 1866
BseRI	GAGGAG	5 cut(s)	401, 446, 488, 1320, 2274
BseSI	GKGCMC	1 cut(s)	1671
BseXI	GCAGC	4 cut(s)	850, 1131, 1334, 1603
Bsh1236I	CGCG	1 cut(s)	525
Bsh1285I	CGRYCG	1 cut(s)	2141
BshFI	GGCC	3 cut(s)	799, 2380, 2559
BshVI	ATCGAT	1 cut(s)	2427
BsiEI	CGRYCG	1 cut(s)	2141
BsiHKAI	GWGCWC	1 cut(s)	1717
BsiHKCI	CYCGRG	1 cut(s)	1762
BsiSI	CCGG	4 cut(s)	334, 1821, 1869, 2137
BslFI	GGGAC	7 cut(s)	172, 518, 602, 998, 1304, 1330, 1549
BslI	CCNNNNNNNGG	9 cut(s)	340, 426, 427, 1053, 1532, 1642, 1821, 1827, 2273
BsmAI	GTCTC	3 cut(s)	2135, 2148, 2360
BsmFI	GGGAC	7 cut(s)	172, 518, 602, 998, 1304, 1330, 1549
BsmI	GAATGC	2 cut(s)	400, 938
BsnI	GGCC	3 cut(s)	799, 2380, 2559
BsoBI	CYCGRG	1 cut(s)	1762
Bsp119I	TTCGAA	2 cut(s)	48, 414
Bsp1286I	GDGCHC	4 cut(s)	22, 1671, 1717, 2226
Bsp1407I	TGTACA	1 cut(s)	1743
Bsp143I	GATC	5 cut(s)	540, 1777, 2031, 2117, 2591
Bsp19I	CCATGG	1 cut(s)	1461
BspANI	GGCC	3 cut(s)	799, 2380, 2559
BspCNI	CTCAG	2 cut(s)	565, 628
BspDI	ATCGAT	1 cut(s)	2427
BspFNI	CGCG	1 cut(s)	525
BspLI	GGNNCC	7 cut(s)	19, 332, 506, 507, 800, 986, 987
BspMAI	CTGCAG	1 cut(s)	1149
BspMI	ACCTGC	1 cut(s)	741
BspPI	GGATC	3 cut(s)	535, 1785, 2039
BspT104I	TTCGAA	2 cut(s)	48, 414
BsrBI	CCGCTC	1 cut(s)	1943
BsrDI	GCAATG	4 cut(s)	871, 876, 1516, 1727
BsrFI	RCCGGY	2 cut(s)	1868, 2136
BsrGI	TGTACA	1 cut(s)	1743
BsrI	ACTGG	8 cut(s)	184, 544, 596, 986, 1081, 1647, 1710, 1866
BssAI	RCCGGY	2 cut(s)	1868, 2136
BssECI	CCNNGG	3 cut(s)	305, 801, 1461
BssMI	GATC	5 cut(s)	540, 1777, 2031, 2117, 2591
BssNAI	GTATAC	2 cut(s)	760, 2145
BssSI	CACGAG	1 cut(s)	1166
BssT1I	CCWWGG	2 cut(s)	305, 1461
Bst1107I	GTATAC	2 cut(s)	760, 2145
Bst2BI	CACGAG	1 cut(s)	1166
Bst2UI	CCWGG	2 cut(s)	803, 2274
Bst4CI	ACNGT	5 cut(s)	295, 1487, 2078, 2261, 2297
Bst6I	CTCTTC	2 cut(s)	1052, 1297
BstAUI	TGTACA	1 cut(s)	1743
BstBI	TTCGAA	2 cut(s)	48, 414
BstC8I	GCNNGC	6 cut(s)	342, 693, 1128, 1345, 1845, 2378
BstDEI	CTNAG	5 cut(s)	563, 573, 636, 675, 1611
BstDSI	CCRYGG	1 cut(s)	1461
BstEII	GGTNACC	1 cut(s)	1432
BstENI	CCTNNNNNAGG	1 cut(s)	1530
BstFNI	CGCG	1 cut(s)	525
BstH2I	RGCGCY	1 cut(s)	203
BstHHI	GCGC	2 cut(s)	202, 525
BstKTI	GATC	5 cut(s)	543, 1780, 2034, 2120, 2594
BstMAI	GTCTC	3 cut(s)	2135, 2148, 2360
BstMBI	GATC	5 cut(s)	540, 1777, 2031, 2117, 2591
BstMCI	CGRYCG	1 cut(s)	2141
BstMWI	GCNNNNNNNGC	6 cut(s)	1214, 1280, 1353, 1817, 2230, 2585
BstNI	CCWGG	2 cut(s)	803, 2274
BstNSI	RCATGY	2 cut(s)	1409, 1847
BstPI	GGTNACC	1 cut(s)	1432
BstSCI	CCNGG	4 cut(s)	333, 801, 1820, 2272
BstSFI	CTRYAG	3 cut(s)	1145, 1917, 2069
BstSLI	GKGCMC	1 cut(s)	1671
BstUI	CGCG	1 cut(s)	525
BstV1I	GCAGC	4 cut(s)	850, 1131, 1334, 1603
BstV2I	GAAGAC	2 cut(s)	1449, 2031
BstX2I	RGATCY	1 cut(s)	2117
BstYI	RGATCY	1 cut(s)	2117
BstZ17I	GTATAC	2 cut(s)	760, 2145
Bsu15I	ATCGAT	1 cut(s)	2427
BsuI	GTATCC	2 cut(s)	861, 2529
BsuRI	GGCC	3 cut(s)	799, 2380, 2559
BsuTUI	ATCGAT	1 cut(s)	2427
BtgI	CCRYGG	1 cut(s)	1461
BtsI	GCAGTG	3 cut(s)	739, 2003, 2277
BveI	ACCTGC	1 cut(s)	741
Cac8I	GCNNGC	6 cut(s)	342, 693, 1128, 1345, 1845, 2378
CfoI	GCGC	2 cut(s)	202, 525
Cfr10I	RCCGGY	2 cut(s)	1868, 2136
Cfr13I	GGNCC	3 cut(s)	505, 798, 985
ClaI	ATCGAT	1 cut(s)	2427
CseI	GACGC	1 cut(s)	1575
Csp6I	GTAC	7 cut(s)	95, 241, 570, 1678, 1729, 1744, 2337
CviQI	GTAC	7 cut(s)	95, 241, 570, 1678, 1729, 1744, 2337
DdeI	CTNAG	5 cut(s)	563, 573, 636, 675, 1611
DpnI	GATC	5 cut(s)	542, 1779, 2033, 2119, 2593
DpnII	GATC	5 cut(s)	540, 1777, 2031, 2117, 2591
DraI	TTTAAA	1 cut(s)	2106
EaeI	YGGCCR	1 cut(s)	2557
Eam1104I	CTCTTC	2 cut(s)	1052, 1297
EarI	CTCTTC	2 cut(s)	1052, 1297
Eco130I	CCWWGG	2 cut(s)	305, 1461
Eco147I	AGGCCT	1 cut(s)	2380
Eco24I	GRGCYC	2 cut(s)	22, 2226
Eco47I	GGWCC	2 cut(s)	505, 985
Eco47III	AGCGCT	1 cut(s)	201
Eco57I	CTGAAG	4 cut(s)	398, 929, 2568, 2582
Eco88I	CYCGRG	1 cut(s)	1762
Eco91I	GGTNACC	1 cut(s)	1432
EcoNI	CCTNNNNNAGG	1 cut(s)	1530
EcoO109I	RGGNCCY	3 cut(s)	505, 798, 985
EcoO65I	GGTNACC	1 cut(s)	1432
EcoRII	CCWGG	2 cut(s)	801, 2272
EcoT14I	CCWWGG	2 cut(s)	305, 1461
EcoT22I	ATGCAT	4 cut(s)	400, 938, 1795, 1849
EcoT38I	GRGCYC	2 cut(s)	22, 2226
ErhI	CCWWGG	2 cut(s)	305, 1461
FalI	AAGNNNNNCTT	2 cut(s)	2085, 2117
FaqI	GGGAC	7 cut(s)	172, 518, 602, 998, 1304, 1330, 1549
FauI	CCCGC	1 cut(s)	825
FauNDI	CATATG	1 cut(s)	846
FblI	GTMKAC	2 cut(s)	759, 2144
Fnu4HI	GCNGC	9 cut(s)	518, 521, 526, 864, 1145, 1348, 1617, 1944, 2355
FriOI	GRGCYC	2 cut(s)	22, 2226
Fsp4HI	GCNGC	9 cut(s)	518, 521, 526, 864, 1145, 1348, 1617, 1944, 2355
FspBI	CTAG	3 cut(s)	963, 1838, 2411
GlaI	GCGC	2 cut(s)	201, 524
GluI	GCNGC	9 cut(s)	518, 521, 526, 864, 1145, 1348, 1617, 1944, 2355
HaeII	RGCGCY	1 cut(s)	203
HaeIII	GGCC	3 cut(s)	799, 2380, 2559
HapII	CCGG	4 cut(s)	334, 1821, 1869, 2137
HgaI	GACGC	1 cut(s)	1575
HhaI	GCGC	2 cut(s)	202, 525
Hin6I	GCGC	2 cut(s)	200, 523
HinP1I	GCGC	2 cut(s)	200, 523
HindIII	AAGCTT	2 cut(s)	247, 596
HinfI	GANTC	6 cut(s)	1622, 1628, 2177, 2414, 2462, 2471
HpaII	CCGG	4 cut(s)	334, 1821, 1869, 2137
HphI	GGTGA	8 cut(s)	73, 244, 296, 368, 500, 550, 1426, 1883
Hpy188I	TCNGA	8 cut(s)	208, 909, 1101, 1627, 1633, 2092, 2176, 2398
HpyCH4III	ACNGT	5 cut(s)	295, 1487, 2078, 2261, 2297
HpyCH4IV	ACGT	1 cut(s)	1118
HpyF10VI	GCNNNNNNNGC	6 cut(s)	1214, 1280, 1353, 1817, 2230, 2585
HpyF3I	CTNAG	5 cut(s)	563, 573, 636, 675, 1611
HpySE526I	ACGT	1 cut(s)	1118
HspAI	GCGC	2 cut(s)	200, 523
KflI	GGGWCCC	2 cut(s)	505, 985
Kzo9I	GATC	5 cut(s)	540, 1777, 2031, 2117, 2591
LmnI	GCTCC	7 cut(s)	17, 337, 433, 1112, 1213, 2287, 2311
Lsp1109I	GCAGC	4 cut(s)	850, 1131, 1334, 1603
LweI	GCATC	8 cut(s)	291, 819, 1366, 1712, 1802, 1820, 2053, 2293
MaeI	CTAG	3 cut(s)	963, 1838, 2411
MaeII	ACGT	1 cut(s)	1118
MaeIII	GTNAC	5 cut(s)	883, 977, 1383, 1432, 2083
MalI	GATC	5 cut(s)	542, 1779, 2033, 2119, 2593
MbiI	CCGCTC	1 cut(s)	1943
MboI	GATC	5 cut(s)	540, 1777, 2031, 2117, 2591
MfeI	CAATTG	1 cut(s)	1886
MflI	RGATCY	1 cut(s)	2117
MhlI	GDGCHC	4 cut(s)	22, 1671, 1717, 2226
MlyI	GAGTC	1 cut(s)	2408
MmeI	TCCRAC	3 cut(s)	429, 665, 2154
Mph1103I	ATGCAT	4 cut(s)	400, 938, 1795, 1849
MseI	TTAA	4 cut(s)	1956, 2048, 2105, 2111
MslI	CAYNNNNRTG	4 cut(s)	1445, 1479, 1574, 2079
MspA1I	CMGCKG	1 cut(s)	2357
MspI	CCGG	4 cut(s)	334, 1821, 1869, 2137
MspR9I	CCNGG	4 cut(s)	335, 803, 1822, 2274
MunI	CAATTG	1 cut(s)	1886
Mva1269I	GAATGC	2 cut(s)	400, 938
MvaI	CCWGG	2 cut(s)	803, 2274
MvnI	CGCG	1 cut(s)	525
MwoI	GCNNNNNNNGC	6 cut(s)	1214, 1280, 1353, 1817, 2230, 2585
NciI	CCSGG	2 cut(s)	335, 1822
NcoI	CCATGG	1 cut(s)	1461
NdeI	CATATG	1 cut(s)	846
NdeII	GATC	5 cut(s)	540, 1777, 2031, 2117, 2591
NlaIV	GGNNCC	7 cut(s)	19, 332, 506, 507, 800, 986, 987
NmeAIII	GCCGAG	2 cut(s)	262, 2535
NmuCI	GTSAC	1 cut(s)	1432
NsiI	ATGCAT	4 cut(s)	400, 938, 1795, 1849
NspI	RCATGY	2 cut(s)	1409, 1847
NspV	TTCGAA	2 cut(s)	48, 414
PaeI	GCATGC	1 cut(s)	1847
PceI	AGGCCT	1 cut(s)	2380
PciI	ACATGT	1 cut(s)	1405
PcsI	WCGNNNNNNNCGW	1 cut(s)	2147
PctI	GAATGC	2 cut(s)	400, 938
PfeI	GAWTC	5 cut(s)	1622, 1628, 2177, 2462, 2471
PfoI	TCCNGGA	1 cut(s)	333
PkrI	GCNGC	9 cut(s)	519, 522, 527, 865, 1146, 1349, 1618, 1945, 2356
PleI	GAGTC	1 cut(s)	2408
PpsI	GAGTC	1 cut(s)	2408
PpuMI	RGGWCCY	2 cut(s)	505, 985
PscI	ACATGT	1 cut(s)	1405
PsiI	TTATAA	1 cut(s)	720
Psp5II	RGGWCCY	2 cut(s)	505, 985
Psp6I	CCWGG	2 cut(s)	801, 2272
PspEI	GGTNACC	1 cut(s)	1432
PspGI	CCWGG	2 cut(s)	801, 2272
PspN4I	GGNNCC	7 cut(s)	19, 332, 506, 507, 800, 986, 987
PspPI	GGNCC	3 cut(s)	505, 798, 985
PspPPI	RGGWCCY	2 cut(s)	505, 985
PstI	CTGCAG	1 cut(s)	1149
PsuI	RGATCY	1 cut(s)	2117
RsaI	GTAC	7 cut(s)	96, 242, 571, 1679, 1730, 1745, 2338
RsaNI	GTAC	7 cut(s)	95, 241, 570, 1678, 1729, 1744, 2337
RseI	CAYNNNNRTG	4 cut(s)	1445, 1479, 1574, 2079
SaqAI	TTAA	4 cut(s)	1956, 2048, 2105, 2111
SatI	GCNGC	9 cut(s)	518, 521, 526, 864, 1145, 1348, 1617, 1944, 2355
Sau3AI	GATC	5 cut(s)	540, 1777, 2031, 2117, 2591
Sau96I	GGNCC	3 cut(s)	505, 798, 985
ScaI	AGTACT	1 cut(s)	1730
SchI	GAGTC	1 cut(s)	2408
ScrFI	CCNGG	4 cut(s)	335, 803, 1822, 2274
SduI	GDGCHC	4 cut(s)	22, 1671, 1717, 2226
SfaNI	GCATC	8 cut(s)	291, 819, 1366, 1712, 1802, 1820, 2053, 2293
SfcI	CTRYAG	3 cut(s)	1145, 1917, 2069
SfuI	TTCGAA	2 cut(s)	48, 414
SinI	GGWCC	2 cut(s)	505, 985
SmiMI	CAYNNNNRTG	4 cut(s)	1445, 1479, 1574, 2079
SmlI	CTYRAG	1 cut(s)	1697
SmoI	CTYRAG	1 cut(s)	1697
SphI	GCATGC	1 cut(s)	1847
SseBI	AGGCCT	1 cut(s)	2380
SspMI	CTAG	3 cut(s)	963, 1838, 2411
StuI	AGGCCT	1 cut(s)	2380
StyD4I	CCNGG	4 cut(s)	333, 801, 1820, 2272
StyI	CCWWGG	2 cut(s)	305, 1461
TaaI	ACNGT	5 cut(s)	295, 1487, 2078, 2261, 2297
TaiI	ACGT	1 cut(s)	1121
TaqI	TCGA	9 cut(s)	48, 414, 602, 1924, 2150, 2329, 2417, 2427, 2439
TaqII	GACCGA	1 cut(s)	881
TatI	WGTACW	4 cut(s)	240, 1677, 1728, 1743
TauI	GCSGC	5 cut(s)	520, 523, 528, 1946, 2357
TfiI	GAWTC	5 cut(s)	1622, 1628, 2177, 2462, 2471
Tru1I	TTAA	4 cut(s)	1956, 2048, 2105, 2111
Tru9I	TTAA	4 cut(s)	1956, 2048, 2105, 2111
TseFI	GTSAC	1 cut(s)	1432
TseI	GCWGC	4 cut(s)	863, 1144, 1347, 1616
Tsp45I	GTSAC	1 cut(s)	1432
VpaK11BI	GGWCC	2 cut(s)	505, 985
XagI	CCTNNNNNAGG	1 cut(s)	1530
XapI	RAATTY	3 cut(s)	1875, 2164, 2318
XceI	RCATGY	2 cut(s)	1409, 1847
XmiI	GTMKAC	2 cut(s)	759, 2144
XspI	CTAG	3 cut(s)	963, 1838, 2411
ZrmI	AGTACT	1 cut(s)	1730
Zsp2I	ATGCAT	4 cut(s)	400, 938, 1795, 1849

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.