Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0017419

Physical Location & Seq

Genomic Coordinates Forward (+)

25642493 .. 25644508

Gene Structure 2016 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGGTTCGTCAACACCATCAACATCGTTCTCGGCCGACGCTTTAGTCGAGTATAGGCCTGGCCAGATCAGAAGAGTCTCCCGCATCCCCAATGAACATCTTCGCACAAAGAACACAAGATCACCAAGGAGTGGAAGGTCGTCAGTTCTCTCAGTTTTCTGTTCGTCTCTGGTTTCCGCTGCAGCTCTGGTCATCCAGGCCTTCAAGGAGCCGGATCCCGACCGCAAGAAGGTCAACAACATCGAGCACAATGACCTGAGCGGGACCGATGTTCTGACTGCACCCTTCTTCTTCTTCATACTCCCCAGATCTGGAGCCTCTTTCTCTCTCTATCTTTCTCTATCTCTCTTTGTATCTGTATATATCTATAGATCTCTCTCTCTCTCTCTCTCTCTCTCTGATTCTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003954 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0006950 GO:0006970 GO:0008137 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009628 GO:0009631 GO:0016020 GO:0016491 GO:0016651 GO:0016655 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0046872 GO:0046914 GO:0050136 GO:0050896 GO:0050897 GO:0055114 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

ETC_C1_NDUFA4

Protein Analysis

136

Amino Acids

14.94

Weight (kDa)

9.62

Isoelectric Point (pI)

51.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017419)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0113531 RchiOBHm_Chr2g0171981 RchiOBHm_Chr2g0172081 RchiOBHm_Chr6g0290101
rosa_laevigata	RLG00000001897
rosa_roxburghii	Rroxscaffold_1G00002340
rosa_samantha	Rh2AG413300 Rh4CG190800 Rh6AG366900 Rh6BG077100 Rh6CG333400 Rh7AG247600 Rh7CG388400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	44
AccB7I	CCANNNNNTGG	1 cut(s)	131
AccBSI	CCGCTC	1 cut(s)	261
AciI	CCGC	4 cut(s)	82, 177, 223, 261
AclWI	GGATC	2 cut(s)	209, 222
AcoI	YGGCCR	2 cut(s)	33, 61
AfiI	CCNNNNNNNGG	3 cut(s)	131, 229, 311
AgsI	TTSAA	1 cut(s)	205
AjnI	CCWGG	2 cut(s)	58, 195
AluBI	AGCT	1 cut(s)	185
AluI	AGCT	1 cut(s)	185
Alw21I	GWGCWC	1 cut(s)	249
Alw26I	GTCTC	2 cut(s)	82, 171
AlwI	GGATC	2 cut(s)	209, 222
AoxI	GGCC	4 cut(s)	33, 56, 61, 198
ApeKI	GCWGC	2 cut(s)	179, 182
Asp700I	GAANNNNTTC	1 cut(s)	99
AspS9I	GGNCC	1 cut(s)	264
AsuHPI	GGTGA	1 cut(s)	114
AvaII	GGWCC	1 cut(s)	264
BalI	TGGCCA	1 cut(s)	63
BamHI	GGATCC	1 cut(s)	214
Bbv12I	GWGCWC	1 cut(s)	249
BbvI	GCAGC	2 cut(s)	166, 194
BccI	CCATC	1 cut(s)	25
BciT130I	CCWGG	2 cut(s)	60, 197
BcoDI	GTCTC	2 cut(s)	82, 171
BfmI	CTRYAG	2 cut(s)	180, 367
BglII	AGATCT	2 cut(s)	308, 371
BisI	GCNGC	2 cut(s)	180, 183
BlsI	GCNGC	2 cut(s)	181, 184
Bme1390I	CCNGG	2 cut(s)	60, 197
Bme18I	GGWCC	1 cut(s)	264
BmgT120I	GGNCC	1 cut(s)	264
BmiI	GGNNCC	4 cut(s)	210, 216, 265, 316
BmrFI	CCNGG	2 cut(s)	60, 197
BmsI	GCATC	1 cut(s)	93
BpmI	CTGGAG	1 cut(s)	333
Bpu10I	CCTNAGC	1 cut(s)	257
BsaJI	CCNNGG	1 cut(s)	125
Bsc4I	CCNNNNNNNGG	3 cut(s)	131, 229, 311
BseBI	CCWGG	2 cut(s)	60, 197
BseDI	CCNNGG	1 cut(s)	125
BseGI	GGATG	2 cut(s)	84, 192
BseLI	CCNNNNNNNGG	3 cut(s)	131, 229, 311
BseMII	CTCAG	2 cut(s)	165, 248
BseX3I	CGGCCG	1 cut(s)	33
BseXI	GCAGC	2 cut(s)	166, 194
BsgI	GTGCAG	1 cut(s)	264
Bsh1285I	CGRYCG	2 cut(s)	36, 223
BshFI	GGCC	4 cut(s)	35, 58, 63, 200
BsiEI	CGRYCG	2 cut(s)	36, 223
BsiHKAI	GWGCWC	1 cut(s)	249
BsiSI	CCGG	1 cut(s)	212
BslFI	GGGAC	1 cut(s)	277
BslI	CCNNNNNNNGG	3 cut(s)	131, 229, 311
BsmAI	GTCTC	2 cut(s)	82, 171
BsmBI	CGTCTC	1 cut(s)	171
BsmFI	GGGAC	1 cut(s)	277
BsnI	GGCC	4 cut(s)	35, 58, 63, 200
Bsp1286I	GDGCHC	1 cut(s)	249
Bsp143I	GATC	5 cut(s)	66, 119, 214, 308, 371
BspACI	CCGC	4 cut(s)	82, 177, 223, 261
BspANI	GGCC	4 cut(s)	35, 58, 63, 200
BspCNI	CTCAG	2 cut(s)	164, 249
BspLI	GGNNCC	4 cut(s)	210, 216, 265, 316
BspMAI	CTGCAG	1 cut(s)	184
BspPI	GGATC	2 cut(s)	209, 222
BsrBI	CCGCTC	1 cut(s)	261
BssECI	CCNNGG	1 cut(s)	125
BssMI	GATC	5 cut(s)	66, 119, 214, 308, 371
BssT1I	CCWWGG	1 cut(s)	125
Bst2UI	CCWGG	2 cut(s)	60, 197
Bst6I	CTCTTC	1 cut(s)	67
BstDEI	CTNAG	2 cut(s)	151, 257
BstF5I	GGATG	2 cut(s)	84, 192
BstKTI	GATC	5 cut(s)	69, 122, 217, 311, 374
BstMAI	GTCTC	2 cut(s)	82, 171
BstMBI	GATC	5 cut(s)	66, 119, 214, 308, 371
BstMCI	CGRYCG	2 cut(s)	36, 223
BstNI	CCWGG	2 cut(s)	60, 197
BstSCI	CCNGG	2 cut(s)	58, 195
BstSFI	CTRYAG	2 cut(s)	180, 367
BstV1I	GCAGC	2 cut(s)	166, 194
BstX2I	RGATCY	3 cut(s)	214, 308, 371
BstYI	RGATCY	3 cut(s)	214, 308, 371
BstZI	CGGCCG	1 cut(s)	33
BsuRI	GGCC	4 cut(s)	35, 58, 63, 200
BtsCI	GGATG	2 cut(s)	84, 192
Cfr13I	GGNCC	1 cut(s)	264
CseI	GACGC	1 cut(s)	47
CviJI	RGCY	7 cut(s)	35, 58, 63, 185, 200, 211, 317
CviKI_1	RGCY	7 cut(s)	35, 58, 63, 185, 200, 211, 317
DdeI	CTNAG	2 cut(s)	151, 257
DpnI	GATC	5 cut(s)	68, 121, 216, 310, 373
DpnII	GATC	5 cut(s)	66, 119, 214, 308, 371
DrdI	GACNNNNNNGTC	1 cut(s)	44
DseDI	GACNNNNNNGTC	1 cut(s)	44
EaeI	YGGCCR	2 cut(s)	33, 61
EagI	CGGCCG	1 cut(s)	33
Eam1104I	CTCTTC	1 cut(s)	67
EarI	CTCTTC	1 cut(s)	67
EclXI	CGGCCG	1 cut(s)	33
Eco130I	CCWWGG	1 cut(s)	125
Eco147I	AGGCCT	2 cut(s)	58, 200
Eco47I	GGWCC	1 cut(s)	264
Eco52I	CGGCCG	1 cut(s)	33
EcoRII	CCWGG	2 cut(s)	58, 195
EcoT14I	CCWWGG	1 cut(s)	125
ErhI	CCWWGG	1 cut(s)	125
Esp3I	CGTCTC	1 cut(s)	171
FaiI	YATR	5 cut(s)	54, 299, 361, 363, 369
FaqI	GGGAC	1 cut(s)	277
FauI	CCCGC	2 cut(s)	89, 254
Fnu4HI	GCNGC	2 cut(s)	180, 183
FokI	GGATG	2 cut(s)	71, 179
Fsp4HI	GCNGC	2 cut(s)	180, 183
GluI	GCNGC	2 cut(s)	180, 183
GsuI	CTGGAG	1 cut(s)	333
HaeIII	GGCC	4 cut(s)	35, 58, 63, 200
HapII	CCGG	1 cut(s)	212
HgaI	GACGC	1 cut(s)	47
HincII	GTYRAC	2 cut(s)	12, 235
HindII	GTYRAC	2 cut(s)	12, 235
HinfI	GANTC	2 cut(s)	75, 401
HpaII	CCGG	1 cut(s)	212
HphI	GGTGA	1 cut(s)	114
Hpy166II	GTNNAC	2 cut(s)	12, 235
Hpy188I	TCNGA	3 cut(s)	71, 276, 400
Hpy188III	TCNNGA	2 cut(s)	218, 312
Hpy8I	GTNNAC	2 cut(s)	12, 235
Hpy99I	CGWCG	1 cut(s)	41
HpyAV	CCTTC	4 cut(s)	129, 211, 223, 295
HpyCH4V	TGCA	2 cut(s)	182, 281
HpyF3I	CTNAG	2 cut(s)	151, 257
Kzo9I	GATC	5 cut(s)	66, 119, 214, 308, 371
LmnI	GCTCC	2 cut(s)	208, 314
Lsp1109I	GCAGC	2 cut(s)	166, 194
LweI	GCATC	1 cut(s)	93
MalI	GATC	5 cut(s)	68, 121, 216, 310, 373
MbiI	CCGCTC	1 cut(s)	261
MboI	GATC	5 cut(s)	66, 119, 214, 308, 371
MboII	GAAGA	5 cut(s)	84, 92, 280, 283, 286
MflI	RGATCY	3 cut(s)	214, 308, 371
MhlI	GDGCHC	1 cut(s)	249
MlsI	TGGCCA	1 cut(s)	63
MluNI	TGGCCA	1 cut(s)	63
MlyI	GAGTC	1 cut(s)	84
MnlI	CCTC	1 cut(s)	328
Mox20I	TGGCCA	1 cut(s)	63
MroXI	GAANNNNTTC	1 cut(s)	99
MscI	TGGCCA	1 cut(s)	63
Msp20I	TGGCCA	1 cut(s)	63
MspA1I	CMGCKG	1 cut(s)	179
MspI	CCGG	1 cut(s)	212
MspR9I	CCNGG	2 cut(s)	60, 197
MvaI	CCWGG	2 cut(s)	60, 197
NdeII	GATC	5 cut(s)	66, 119, 214, 308, 371
NlaIV	GGNNCC	4 cut(s)	210, 216, 265, 316
NmeAIII	GCCGAG	1 cut(s)	11
PceI	AGGCCT	2 cut(s)	58, 200
PcsI	WCGNNNNNNNCGW	1 cut(s)	45
PdmI	GAANNNNTTC	1 cut(s)	99
PfeI	GAWTC	1 cut(s)	401
PflMI	CCANNNNNTGG	1 cut(s)	131
PkrI	GCNGC	2 cut(s)	181, 184
PleI	GAGTC	1 cut(s)	83
PpsI	GAGTC	1 cut(s)	83
Psp6I	CCWGG	2 cut(s)	58, 195
PspGI	CCWGG	2 cut(s)	58, 195
PspN4I	GGNNCC	4 cut(s)	210, 216, 265, 316
PspPI	GGNCC	1 cut(s)	264
PstI	CTGCAG	1 cut(s)	184
PsuI	RGATCY	3 cut(s)	214, 308, 371
SatI	GCNGC	2 cut(s)	180, 183
Sau3AI	GATC	5 cut(s)	66, 119, 214, 308, 371
Sau96I	GGNCC	1 cut(s)	264
SchI	GAGTC	1 cut(s)	84
ScrFI	CCNGG	2 cut(s)	60, 197
SduI	GDGCHC	1 cut(s)	249
SetI	ASST	4 cut(s)	140, 187, 234, 258
SfaNI	GCATC	1 cut(s)	93
SfcI	CTRYAG	2 cut(s)	180, 367
SinI	GGWCC	1 cut(s)	264
SseBI	AGGCCT	2 cut(s)	58, 200
SsiI	CCGC	4 cut(s)	82, 177, 223, 261
StuI	AGGCCT	2 cut(s)	58, 200
StyD4I	CCNGG	2 cut(s)	58, 195
StyI	CCWWGG	1 cut(s)	125
TaqI	TCGA	2 cut(s)	48, 243
TaqII	GACCGA	1 cut(s)	281
TfiI	GAWTC	1 cut(s)	401
TseI	GCWGC	2 cut(s)	179, 182
TspDTI	ATGAA	2 cut(s)	108, 286
Van91I	CCANNNNNTGG	1 cut(s)	131
VpaK11BI	GGWCC	1 cut(s)	264
XmnI	GAANNNNTTC	1 cut(s)	99

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.