Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0017419

Physical Location & Seq

Genomic Coordinates Reverse (-)

2752156 .. 2778590

Gene Structure 26435 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00002340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGGACGTTGTAGCTAGCCCGGGTTACTTCGATTGGGCCAAGGAGGAGATCGCCAAGGCTGTTAGGGCTGAAGAATGGGGCTTAAGATCGGTTGACTTCATAGAAGATCGGGTCAAAATTGGCCAAGCTGCCAAGAACAAGGTGAAGGTACTACATGAAGGTGCTTCCTTCCCCGAACTATGCACTCACCGTGAAAAGTTGCGTATGGCTTGGCCGATTCTCTTAGCATGGTTAATGCAATTATTAAAAGATATAGTGTGCTGTTCAGGTCATGGAAAGAATGGTTCGCTATGTTCTTCGTCGGTCGGCTCATCCAGAAATGATTACGAAGATTGCTCGATAACTTGTGGGACAATTTTTTTAAAGTTTGGGAATTATATTTGTGCATTTGGAACATGTTGTTTTTCGAATCTCGTTGCTTGCGGAGTTGTTGTAATTTGGAGAGCAAAGTGGCTCCAAGAGATTAAGGAGGGCTTATTAGAAGTTGATCAGCACGAGATGGAGTTCACCGAAGCTCGCAGTAACATGAACTATTTGGTTGCCGAGTACCGCAATACCAGGATGCTACGGTTGAGGATGAAGTTCTGTGACAGTAATGAGGAGGAGAGTGGTGCATTCCATTATTATATATCAAGCAACTTACGATCTCCTTGGATGTCACCGGCAGCAGAGGGATCTTCATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004089 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009814 GO:0009817 GO:0009941 GO:0009987 GO:0010033 GO:0010037 GO:0010119 GO:0010319 GO:0015979 GO:0016020 GO:0016829 GO:0016835 GO:0016836 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042221 GO:0042493 GO:0042651 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0048046 GO:0048519 GO:0048580 GO:0048581 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051704 GO:0051707 GO:0055035 GO:0065007 GO:0071944 GO:0072347 GO:0098542 GO:1901700 GO:2000026 GO:2000038 GO:2000122

KEGG Pathways

Metabolic & Signaling

ko00910 map00910

Pfam Domains

Protein Families

Pro_CA

Protein Analysis

228

Amino Acids

25.86

Weight (kDa)

6.0

Isoelectric Point (pI)

50.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017419)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0113531 RchiOBHm_Chr2g0171981 RchiOBHm_Chr2g0172081 RchiOBHm_Chr6g0290101
rosa_laevigata	RLG00000001897
rosa_roxburghii	Rroxscaffold_1G00002340
rosa_samantha	Rh2AG413300 Rh4CG190800 Rh6AG366900 Rh6BG077100 Rh6CG333400 Rh7AG247600 Rh7CG388400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	423, 550
AclWI	GGATC	1 cut(s)	682
AcoI	YGGCCR	2 cut(s)	121, 212
AcuI	CTGAAG	1 cut(s)	90
AfaI	GTAC	2 cut(s)	150, 548
AflII	CTTAAG	1 cut(s)	82
AflIII	ACRYGT	1 cut(s)	395
AjnI	CCWGG	1 cut(s)	557
AluBI	AGCT	3 cut(s)	14, 128, 515
AluI	AGCT	3 cut(s)	14, 128, 515
AlwI	GGATC	1 cut(s)	682
Ama87I	CYCGRG	1 cut(s)	19
AoxI	GGCC	3 cut(s)	36, 121, 212
ApeKI	GCWGC	2 cut(s)	128, 665
AspS9I	GGNCC	1 cut(s)	36
AsuC2I	CCSGG	2 cut(s)	20, 21
AsuHPI	GGTGA	4 cut(s)	154, 179, 499, 651
AsuII	TTCGAA	1 cut(s)	407
AsuNHI	GCTAGC	1 cut(s)	14
AvaI	CYCGRG	1 cut(s)	19
BalI	TGGCCA	1 cut(s)	123
BauI	CACGAG	1 cut(s)	494
BbvI	GCAGC	2 cut(s)	115, 677
BccI	CCATC	1 cut(s)	493
BciT130I	CCWGG	1 cut(s)	559
BclI	TGATCA	1 cut(s)	487
BcnI	CCSGG	2 cut(s)	20, 21
BfaI	CTAG	1 cut(s)	15
BfrI	CTTAAG	1 cut(s)	82
BisI	GCNGC	2 cut(s)	129, 666
BlsI	GCNGC	2 cut(s)	130, 667
Bme1390I	CCNGG	3 cut(s)	20, 21, 559
BmeT110I	CYCGRG	1 cut(s)	19
BmgT120I	GGNCC	1 cut(s)	36
BmiI	GGNNCC	1 cut(s)	455
BmrFI	CCNGG	3 cut(s)	20, 21, 559
BmsI	GCATC	1 cut(s)	552
BmtI	GCTAGC	1 cut(s)	18
Bpu14I	TTCGAA	1 cut(s)	407
BpuMI	CCSGG	2 cut(s)	20, 21
BsaJI	CCNNGG	4 cut(s)	19, 39, 54, 650
BsaXI	ACNNNNNCTCC	2 cut(s)	417, 447
Bse118I	RCCGGY	1 cut(s)	661
BseBI	CCWGG	1 cut(s)	559
BseDI	CCNNGG	4 cut(s)	19, 39, 54, 650
BseGI	GGATG	4 cut(s)	311, 567, 582, 660
BseRI	GAGGAG	3 cut(s)	59, 614, 617
BseXI	GCAGC	2 cut(s)	115, 677
Bsh1285I	CGRYCG	1 cut(s)	306
BshFI	GGCC	3 cut(s)	38, 123, 214
BsiEI	CGRYCG	1 cut(s)	306
BsiHKCI	CYCGRG	1 cut(s)	19
BsiSI	CCGG	2 cut(s)	20, 662
BslFI	GGGAC	1 cut(s)	364
BsmFI	GGGAC	1 cut(s)	364
BsmI	GAATGC	1 cut(s)	614
BsnI	GGCC	3 cut(s)	38, 123, 214
BsoBI	CYCGRG	1 cut(s)	19
Bsp119I	TTCGAA	1 cut(s)	407
Bsp143I	GATC	6 cut(s)	48, 86, 106, 487, 644, 674
BspACI	CCGC	2 cut(s)	423, 550
BspANI	GGCC	3 cut(s)	38, 123, 214
BspLI	GGNNCC	1 cut(s)	455
BspOI	GCTAGC	1 cut(s)	18
BspPI	GGATC	1 cut(s)	682
BspT104I	TTCGAA	1 cut(s)	407
BspTI	CTTAAG	1 cut(s)	82
BsrFI	RCCGGY	1 cut(s)	661
BssAI	RCCGGY	1 cut(s)	661
BssECI	CCNNGG	4 cut(s)	19, 39, 54, 650
BssMI	GATC	6 cut(s)	48, 86, 106, 487, 644, 674
BssSI	CACGAG	1 cut(s)	494
BssT1I	CCWWGG	3 cut(s)	39, 54, 650
Bst2BI	CACGAG	1 cut(s)	494
Bst2UI	CCWGG	1 cut(s)	559
Bst4CI	ACNGT	3 cut(s)	191, 570, 593
BstAFI	CTTAAG	1 cut(s)	82
BstBI	TTCGAA	1 cut(s)	407
BstC8I	GCNNGC	3 cut(s)	16, 421, 517
BstDEI	CTNAG	1 cut(s)	223
BstF5I	GGATG	4 cut(s)	311, 567, 582, 660
BstKTI	GATC	6 cut(s)	51, 89, 109, 490, 647, 677
BstMBI	GATC	6 cut(s)	48, 86, 106, 487, 644, 674
BstMCI	CGRYCG	1 cut(s)	306
BstMWI	GCNNNNNNNGC	1 cut(s)	65
BstNI	CCWGG	1 cut(s)	559
BstNSI	RCATGY	1 cut(s)	399
BstSCI	CCNGG	3 cut(s)	18, 19, 557
BstV1I	GCAGC	2 cut(s)	115, 677
BstX2I	RGATCY	1 cut(s)	674
BstYI	RGATCY	1 cut(s)	674
BsuRI	GGCC	3 cut(s)	38, 123, 214
BtsCI	GGATG	4 cut(s)	311, 567, 582, 660
Cac8I	GCNNGC	3 cut(s)	16, 421, 517
Cfr10I	RCCGGY	1 cut(s)	661
Cfr13I	GGNCC	1 cut(s)	36
Cfr9I	CCCGGG	1 cut(s)	19
Csp6I	GTAC	2 cut(s)	149, 547
CviAII	CATG	5 cut(s)	155, 228, 272, 396, 526
CviQI	GTAC	2 cut(s)	149, 547
DdeI	CTNAG	1 cut(s)	223
DpnI	GATC	6 cut(s)	50, 88, 108, 489, 646, 676
DpnII	GATC	6 cut(s)	48, 86, 106, 487, 644, 674
DraI	TTTAAA	1 cut(s)	363
EaeI	YGGCCR	2 cut(s)	121, 212
Eco130I	CCWWGG	3 cut(s)	39, 54, 650
Eco57I	CTGAAG	1 cut(s)	90
Eco88I	CYCGRG	1 cut(s)	19
EcoRII	CCWGG	1 cut(s)	557
EcoT14I	CCWWGG	3 cut(s)	39, 54, 650
ErhI	CCWWGG	3 cut(s)	39, 54, 650
FaeI	CATG	5 cut(s)	158, 231, 275, 399, 529
FalI	AAGNNNNNCTT	2 cut(s)	458, 490
FaqI	GGGAC	1 cut(s)	364
FatI	CATG	5 cut(s)	154, 227, 271, 395, 525
FbaI	TGATCA	1 cut(s)	487
Fnu4HI	GCNGC	2 cut(s)	129, 666
FokI	GGATG	4 cut(s)	298, 574, 589, 667
Fsp4HI	GCNGC	2 cut(s)	129, 666
FspBI	CTAG	1 cut(s)	15
GluI	GCNGC	2 cut(s)	129, 666
HaeIII	GGCC	3 cut(s)	38, 123, 214
HapII	CCGG	2 cut(s)	20, 662
Hin1II	CATG	5 cut(s)	158, 231, 275, 399, 529
HincII	GTYRAC	1 cut(s)	94
HindII	GTYRAC	1 cut(s)	94
HinfI	GANTC	2 cut(s)	217, 409
HpaII	CCGG	2 cut(s)	20, 662
HphI	GGTGA	4 cut(s)	154, 179, 499, 651
Hpy166II	GTNNAC	2 cut(s)	94, 507
Hpy188III	TCNNGA	1 cut(s)	315
Hpy8I	GTNNAC	2 cut(s)	94, 507
Hpy99I	CGWCG	1 cut(s)	304
HpyAV	CCTTC	3 cut(s)	139, 152, 178
HpyCH4III	ACNGT	3 cut(s)	191, 570, 593
HpyCH4IV	ACGT	1 cut(s)	6
HpyCH4V	TGCA	4 cut(s)	183, 238, 386, 614
HpyF10VI	GCNNNNNNNGC	1 cut(s)	65
HpyF3I	CTNAG	1 cut(s)	223
HpySE526I	ACGT	1 cut(s)	6
Hsp92II	CATG	5 cut(s)	158, 231, 275, 399, 529
Ksp22I	TGATCA	1 cut(s)	487
Kzo9I	GATC	6 cut(s)	48, 86, 106, 487, 644, 674
LmnI	GCTCC	1 cut(s)	459
LpnPI	CCDG	6 cut(s)	33, 252, 328, 544, 571, 675
Lsp1109I	GCAGC	2 cut(s)	115, 677
LweI	GCATC	1 cut(s)	552
MaeI	CTAG	1 cut(s)	15
MaeII	ACGT	1 cut(s)	6
MaeIII	GTNAC	4 cut(s)	23, 521, 587, 657
MalI	GATC	6 cut(s)	50, 88, 108, 489, 646, 676
MboI	GATC	6 cut(s)	48, 86, 106, 487, 644, 674
MboII	GAAGA	5 cut(s)	83, 116, 288, 341, 669
MflI	RGATCY	1 cut(s)	674
MlsI	TGGCCA	1 cut(s)	123
MluCI	AATT	5 cut(s)	117, 239, 354, 373, 435
MluNI	TGGCCA	1 cut(s)	123
MnlI	CCTC	6 cut(s)	37, 463, 567, 592, 595, 664
Mox20I	TGGCCA	1 cut(s)	123
MscI	TGGCCA	1 cut(s)	123
MseI	TTAA	6 cut(s)	83, 233, 245, 362, 465, 685
MslI	CAYNNNNRTG	1 cut(s)	159
Msp20I	TGGCCA	1 cut(s)	123
MspCI	CTTAAG	1 cut(s)	82
MspI	CCGG	2 cut(s)	20, 662
MspR9I	CCNGG	3 cut(s)	20, 21, 559
Mva1269I	GAATGC	1 cut(s)	614
MvaI	CCWGG	1 cut(s)	559
MwoI	GCNNNNNNNGC	1 cut(s)	65
NciI	CCSGG	2 cut(s)	20, 21
NdeII	GATC	6 cut(s)	48, 86, 106, 487, 644, 674
NheI	GCTAGC	1 cut(s)	14
NlaIII	CATG	5 cut(s)	158, 231, 275, 399, 529
NlaIV	GGNNCC	1 cut(s)	455
NmeAIII	GCCGAG	1 cut(s)	568
NmuCI	GTSAC	2 cut(s)	587, 657
NspI	RCATGY	1 cut(s)	399
NspV	TTCGAA	1 cut(s)	407
PciI	ACATGT	1 cut(s)	395
PctI	GAATGC	1 cut(s)	614
PfeI	GAWTC	2 cut(s)	217, 409
PkrI	GCNGC	2 cut(s)	130, 667
PscI	ACATGT	1 cut(s)	395
Psp6I	CCWGG	1 cut(s)	557
PspGI	CCWGG	1 cut(s)	557
PspN4I	GGNNCC	1 cut(s)	455
PspPI	GGNCC	1 cut(s)	36
PsuI	RGATCY	1 cut(s)	674
RsaI	GTAC	2 cut(s)	150, 548
RsaNI	GTAC	2 cut(s)	149, 547
RseI	CAYNNNNRTG	1 cut(s)	159
SaqAI	TTAA	6 cut(s)	83, 233, 245, 362, 465, 685
SatI	GCNGC	2 cut(s)	129, 666
Sau3AI	GATC	6 cut(s)	48, 86, 106, 487, 644, 674
Sau96I	GGNCC	1 cut(s)	36
ScrFI	CCNGG	3 cut(s)	20, 21, 559
SetI	ASST	8 cut(s)	9, 16, 130, 144, 150, 163, 271, 517
SfaNI	GCATC	1 cut(s)	552
SfuI	TTCGAA	1 cut(s)	407
SmaI	CCCGGG	1 cut(s)	21
SmiMI	CAYNNNNRTG	1 cut(s)	159
SmlI	CTYRAG	1 cut(s)	82
SmoI	CTYRAG	1 cut(s)	82
Sse9I	AATT	5 cut(s)	117, 239, 354, 373, 435
SsiI	CCGC	2 cut(s)	423, 550
SspMI	CTAG	1 cut(s)	15
StyD4I	CCNGG	3 cut(s)	18, 19, 557
StyI	CCWWGG	3 cut(s)	39, 54, 650
TaaI	ACNGT	3 cut(s)	191, 570, 593
TaiI	ACGT	1 cut(s)	9
TaqI	TCGA	3 cut(s)	30, 338, 407
TaqII	GACCGA	1 cut(s)	292
TasI	AATT	5 cut(s)	117, 239, 354, 373, 435
TfiI	GAWTC	2 cut(s)	217, 409
Tru1I	TTAA	6 cut(s)	83, 233, 245, 362, 465, 685
Tru9I	TTAA	6 cut(s)	83, 233, 245, 362, 465, 685
TseFI	GTSAC	2 cut(s)	587, 657
TseI	GCWGC	2 cut(s)	128, 665
Tsp45I	GTSAC	2 cut(s)	587, 657
TspDTI	ATGAA	5 cut(s)	88, 171, 542, 593, 669
TspMI	CCCGGG	1 cut(s)	19
Vha464I	CTTAAG	1 cut(s)	82
XceI	RCATGY	1 cut(s)	399
XmaI	CCCGGG	1 cut(s)	19
XspI	CTAG	1 cut(s)	15

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.