Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0017419

Physical Location & Seq

Genomic Coordinates Reverse (-)

85534379 .. 85535289

Gene Structure 911 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ53930

Sequence Viewer

CDS Protein Promoter (2k)

Length: 243 bp

ATGAATGTTTCATACATTGTGGTGATCGGGCACAGTGCTTGTGGTGGAATTAAGGGTATTCCAGAAGATGGATCCATTTCCACGAACAACGTAAAGGCACTACATGAAGGTGCTTCCTTCCCTGAACTATGCTCTCATTGTGAAAAGGAAGCGGTGAATGTTTCTATTGGAAATTTGCTGAGCTATCCATTTGTAAGACTGTTGGTGAAAAAAAACCCTCCGATTAAAGGGGGGCTACTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004089 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009814 GO:0009817 GO:0009941 GO:0009987 GO:0010033 GO:0010037 GO:0010119 GO:0010319 GO:0015979 GO:0016020 GO:0016829 GO:0016835 GO:0016836 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042221 GO:0042493 GO:0042651 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0048046 GO:0048519 GO:0048580 GO:0048581 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051704 GO:0051707 GO:0055035 GO:0065007 GO:0071944 GO:0072347 GO:0098542 GO:1901700 GO:2000026 GO:2000038 GO:2000122

KEGG Pathways

Metabolic & Signaling

ko00910 map00910

Pfam Domains

Protein Families

Pro_CA

Protein Analysis

80

Amino Acids

8.43

Weight (kDa)

7.75

Isoelectric Point (pI)

21.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017419)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0113531 RchiOBHm_Chr2g0171981 RchiOBHm_Chr2g0172081 RchiOBHm_Chr6g0290101
rosa_laevigata	RLG00000001897
rosa_roxburghii	Rroxscaffold_1G00002340
rosa_samantha	Rh2AG413300 Rh4CG190800 Rh6AG366900 Rh6BG077100 Rh6CG333400 Rh7AG247600 Rh7CG388400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	68
AciI	CCGC	1 cut(s)	152
AclWI	GGATC	2 cut(s)	66, 79
AcsI	RAATTY	1 cut(s)	172
AfiI	CCNNNNNNNGG	2 cut(s)	68, 227
AluBI	AGCT	1 cut(s)	183
AluI	AGCT	1 cut(s)	183
AlwI	GGATC	2 cut(s)	66, 79
ApoI	RAATTY	1 cut(s)	172
AsuHPI	GGTGA	3 cut(s)	34, 166, 217
BaeGI	GKGCMC	1 cut(s)	33
BamHI	GGATCC	1 cut(s)	71
BccI	CCATC	1 cut(s)	62
BlpI	GCTNAGC	1 cut(s)	179
BmiI	GGNNCC	1 cut(s)	73
Bpu1102I	GCTNAGC	1 cut(s)	179
Bsc4I	CCNNNNNNNGG	2 cut(s)	68, 227
BseLI	CCNNNNNNNGG	2 cut(s)	68, 227
BseMII	CTCAG	1 cut(s)	170
BseSI	GKGCMC	1 cut(s)	33
BslI	CCNNNNNNNGG	2 cut(s)	68, 227
Bsp1286I	GDGCHC	1 cut(s)	33
Bsp143I	GATC	2 cut(s)	24, 71
Bsp1720I	GCTNAGC	1 cut(s)	179
BspACI	CCGC	1 cut(s)	152
BspCNI	CTCAG	1 cut(s)	171
BspLI	GGNNCC	1 cut(s)	73
BspPI	GGATC	2 cut(s)	66, 79
BssMI	GATC	2 cut(s)	24, 71
Bst4CI	ACNGT	2 cut(s)	35, 201
BstDEI	CTNAG	1 cut(s)	179
BstKTI	GATC	2 cut(s)	27, 74
BstMBI	GATC	2 cut(s)	24, 71
BstSLI	GKGCMC	1 cut(s)	33
BstX2I	RGATCY	1 cut(s)	71
BstYI	RGATCY	1 cut(s)	71
BtsIMutI	CAGTG	1 cut(s)	40
CviAII	CATG	1 cut(s)	104
CviJI	RGCY	2 cut(s)	183, 235
CviKI_1	RGCY	2 cut(s)	183, 235
DdeI	CTNAG	1 cut(s)	179
DpnI	GATC	2 cut(s)	26, 73
DpnII	GATC	2 cut(s)	24, 71
FaeI	CATG	1 cut(s)	107
FaiI	YATR	4 cut(s)	13, 105, 130, 241
FatI	CATG	1 cut(s)	103
Hin1II	CATG	1 cut(s)	107
HphI	GGTGA	3 cut(s)	34, 166, 217
Hpy188I	TCNGA	1 cut(s)	222
Hpy188III	TCNNGA	1 cut(s)	62
HpyAV	CCTTC	2 cut(s)	101, 127
HpyCH4III	ACNGT	2 cut(s)	35, 201
HpyCH4IV	ACGT	1 cut(s)	90
HpyF3I	CTNAG	1 cut(s)	179
HpySE526I	ACGT	1 cut(s)	90
Hsp92II	CATG	1 cut(s)	107
Kzo9I	GATC	2 cut(s)	24, 71
LpnPI	CCDG	2 cut(s)	75, 135
MaeII	ACGT	1 cut(s)	90
MalI	GATC	2 cut(s)	26, 73
MboI	GATC	2 cut(s)	24, 71
MboII	GAAGA	1 cut(s)	77
MflI	RGATCY	1 cut(s)	71
MhlI	GDGCHC	1 cut(s)	33
MluCI	AATT	2 cut(s)	48, 172
MnlI	CCTC	1 cut(s)	228
MseI	TTAA	2 cut(s)	51, 225
MslI	CAYNNNNRTG	2 cut(s)	20, 108
NdeII	GATC	2 cut(s)	24, 71
NlaIII	CATG	1 cut(s)	107
NlaIV	GGNNCC	1 cut(s)	73
PflMI	CCANNNNNTGG	1 cut(s)	68
PspN4I	GGNNCC	1 cut(s)	73
PsuI	RGATCY	1 cut(s)	71
RseI	CAYNNNNRTG	2 cut(s)	20, 108
SaqAI	TTAA	2 cut(s)	51, 225
Sau3AI	GATC	2 cut(s)	24, 71
SduI	GDGCHC	1 cut(s)	33
SetI	ASST	3 cut(s)	93, 112, 185
SgeI	CNNG	6 cut(s)	40, 51, 74, 94, 116, 134
SmiMI	CAYNNNNRTG	2 cut(s)	20, 108
Sse9I	AATT	2 cut(s)	48, 172
SsiI	CCGC	1 cut(s)	152
TaaI	ACNGT	2 cut(s)	35, 201
TaiI	ACGT	1 cut(s)	93
TasI	AATT	2 cut(s)	48, 172
Tru1I	TTAA	2 cut(s)	51, 225
Tru9I	TTAA	2 cut(s)	51, 225
TscAI	CASTG	1 cut(s)	40
TspDTI	ATGAA	2 cut(s)	17, 120
TspRI	CASTG	1 cut(s)	40
Van91I	CCANNNNNTGG	1 cut(s)	68
XapI	RAATTY	1 cut(s)	172

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.