Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0017419

Physical Location & Seq

Genomic Coordinates Reverse (-)

56530505 .. 56532370

Gene Structure 1866 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG366900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 198 bp

ATGGGTTCGTCAACACCATCAACATCGTTCTCGGCCGACGCTTTAGTCGAGTATAGGCCTGGCCAGATCAGAAGAGTCTCCCGCATCCCCAATGAACATCTTCGCACAAAGGCCATCCTGCCACCAGATCTTGAAGAGAACCTGAGGCTGAGATGTAAGGGCAGTAGGGCCACCATTCATGCACTTCGGCTCCGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003954 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0006950 GO:0006970 GO:0008137 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009628 GO:0009631 GO:0016020 GO:0016491 GO:0016651 GO:0016655 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0046872 GO:0046914 GO:0050136 GO:0050896 GO:0050897 GO:0055114 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

ETC_C1_NDUFA4

Protein Analysis

65

Amino Acids

7.34

Weight (kDa)

11.14

Isoelectric Point (pI)

56.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017419)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0113531 RchiOBHm_Chr2g0171981 RchiOBHm_Chr2g0172081 RchiOBHm_Chr6g0290101
rosa_laevigata	RLG00000001897
rosa_roxburghii	Rroxscaffold_1G00002340
rosa_samantha	Rh2AG413300 Rh4CG190800 Rh6AG366900 Rh6BG077100 Rh6CG333400 Rh7AG247600 Rh7CG388400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	44
AciI	CCGC	1 cut(s)	82
AcoI	YGGCCR	2 cut(s)	33, 61
AgsI	TTSAA	1 cut(s)	134
AjnI	CCWGG	1 cut(s)	58
Alw26I	GTCTC	1 cut(s)	82
AoxI	GGCC	5 cut(s)	33, 56, 61, 111, 168
Asp700I	GAANNNNTTC	1 cut(s)	99
AspS9I	GGNCC	1 cut(s)	168
AxyI	CCTNAGG	1 cut(s)	143
BalI	TGGCCA	1 cut(s)	63
BccI	CCATC	2 cut(s)	25, 122
BciT130I	CCWGG	1 cut(s)	60
BcoDI	GTCTC	1 cut(s)	82
BglII	AGATCT	1 cut(s)	127
Bme1390I	CCNGG	1 cut(s)	60
BmgT120I	GGNCC	1 cut(s)	168
BmiI	GGNNCC	1 cut(s)	191
BmrFI	CCNGG	1 cut(s)	60
BmsI	GCATC	1 cut(s)	93
BsaWI	WCCGGW	1 cut(s)	192
BsaXI	ACNNNNNCTCC	1 cut(s)	174
Bse21I	CCTNAGG	1 cut(s)	143
BseBI	CCWGG	1 cut(s)	60
BseGI	GGATG	2 cut(s)	84, 114
BseMII	CTCAG	2 cut(s)	134, 140
BseX3I	CGGCCG	1 cut(s)	33
Bsh1285I	CGRYCG	1 cut(s)	36
BshFI	GGCC	5 cut(s)	35, 58, 63, 113, 170
BsiEI	CGRYCG	1 cut(s)	36
BsiSI	CCGG	1 cut(s)	193
BsmAI	GTCTC	1 cut(s)	82
BsnI	GGCC	5 cut(s)	35, 58, 63, 113, 170
Bsp143I	GATC	2 cut(s)	66, 127
BspACI	CCGC	1 cut(s)	82
BspANI	GGCC	5 cut(s)	35, 58, 63, 113, 170
BspCNI	CTCAG	2 cut(s)	135, 141
BspLI	GGNNCC	1 cut(s)	191
BssMI	GATC	2 cut(s)	66, 127
Bst2UI	CCWGG	1 cut(s)	60
Bst6I	CTCTTC	2 cut(s)	67, 129
BstDEI	CTNAG	2 cut(s)	143, 149
BstF5I	GGATG	2 cut(s)	84, 114
BstKTI	GATC	2 cut(s)	69, 130
BstMAI	GTCTC	1 cut(s)	82
BstMBI	GATC	2 cut(s)	66, 127
BstMCI	CGRYCG	1 cut(s)	36
BstNI	CCWGG	1 cut(s)	60
BstSCI	CCNGG	1 cut(s)	58
BstX2I	RGATCY	1 cut(s)	127
BstYI	RGATCY	1 cut(s)	127
BstZI	CGGCCG	1 cut(s)	33
Bsu36I	CCTNAGG	1 cut(s)	143
BsuRI	GGCC	5 cut(s)	35, 58, 63, 113, 170
BtsCI	GGATG	2 cut(s)	84, 114
Cfr13I	GGNCC	1 cut(s)	168
CseI	GACGC	1 cut(s)	47
CviAII	CATG	1 cut(s)	179
CviJI	RGCY	7 cut(s)	35, 58, 63, 113, 148, 170, 190
CviKI_1	RGCY	7 cut(s)	35, 58, 63, 113, 148, 170, 190
DdeI	CTNAG	2 cut(s)	143, 149
DpnI	GATC	2 cut(s)	68, 129
DpnII	GATC	2 cut(s)	66, 127
DrdI	GACNNNNNNGTC	1 cut(s)	44
DseDI	GACNNNNNNGTC	1 cut(s)	44
EaeI	YGGCCR	2 cut(s)	33, 61
EagI	CGGCCG	1 cut(s)	33
Eam1104I	CTCTTC	2 cut(s)	67, 129
EarI	CTCTTC	2 cut(s)	67, 129
EclXI	CGGCCG	1 cut(s)	33
Eco147I	AGGCCT	1 cut(s)	58
Eco52I	CGGCCG	1 cut(s)	33
Eco81I	CCTNAGG	1 cut(s)	143
EcoRII	CCWGG	1 cut(s)	58
FaeI	CATG	1 cut(s)	182
FaiI	YATR	2 cut(s)	54, 180
FatI	CATG	1 cut(s)	178
FauI	CCCGC	1 cut(s)	89
FokI	GGATG	2 cut(s)	71, 101
HaeIII	GGCC	5 cut(s)	35, 58, 63, 113, 170
HapII	CCGG	1 cut(s)	193
HgaI	GACGC	1 cut(s)	47
Hin1II	CATG	1 cut(s)	182
HincII	GTYRAC	1 cut(s)	12
HindII	GTYRAC	1 cut(s)	12
HinfI	GANTC	1 cut(s)	75
HpaII	CCGG	1 cut(s)	193
Hpy166II	GTNNAC	1 cut(s)	12
Hpy188I	TCNGA	1 cut(s)	71
Hpy188III	TCNNGA	1 cut(s)	131
Hpy8I	GTNNAC	1 cut(s)	12
Hpy99I	CGWCG	1 cut(s)	41
HpyCH4V	TGCA	1 cut(s)	182
HpyF3I	CTNAG	2 cut(s)	143, 149
Hsp92II	CATG	1 cut(s)	182
Kzo9I	GATC	2 cut(s)	66, 127
LmnI	GCTCC	1 cut(s)	195
LpnPI	CCDG	6 cut(s)	45, 72, 77, 131, 138, 155
LweI	GCATC	1 cut(s)	93
MalI	GATC	2 cut(s)	68, 129
MboI	GATC	2 cut(s)	66, 127
MboII	GAAGA	3 cut(s)	84, 92, 146
MflI	RGATCY	1 cut(s)	127
MlsI	TGGCCA	1 cut(s)	63
MluNI	TGGCCA	1 cut(s)	63
MlyI	GAGTC	1 cut(s)	84
MnlI	CCTC	1 cut(s)	138
Mox20I	TGGCCA	1 cut(s)	63
MroXI	GAANNNNTTC	1 cut(s)	99
MscI	TGGCCA	1 cut(s)	63
Msp20I	TGGCCA	1 cut(s)	63
MspI	CCGG	1 cut(s)	193
MspR9I	CCNGG	1 cut(s)	60
MvaI	CCWGG	1 cut(s)	60
NdeII	GATC	2 cut(s)	66, 127
NlaIII	CATG	1 cut(s)	182
NlaIV	GGNNCC	1 cut(s)	191
NmeAIII	GCCGAG	1 cut(s)	11
PceI	AGGCCT	1 cut(s)	58
PcsI	WCGNNNNNNNCGW	1 cut(s)	45
PdmI	GAANNNNTTC	1 cut(s)	99
PleI	GAGTC	1 cut(s)	83
PpsI	GAGTC	1 cut(s)	83
Psp6I	CCWGG	1 cut(s)	58
PspGI	CCWGG	1 cut(s)	58
PspN4I	GGNNCC	1 cut(s)	191
PspPI	GGNCC	1 cut(s)	168
PsuI	RGATCY	1 cut(s)	127
Sau3AI	GATC	2 cut(s)	66, 127
Sau96I	GGNCC	1 cut(s)	168
SchI	GAGTC	1 cut(s)	84
ScrFI	CCNGG	1 cut(s)	60
SetI	ASST	1 cut(s)	144
SfaNI	GCATC	1 cut(s)	93
SseBI	AGGCCT	1 cut(s)	58
SsiI	CCGC	1 cut(s)	82
StuI	AGGCCT	1 cut(s)	58
StyD4I	CCNGG	1 cut(s)	58
TaqI	TCGA	1 cut(s)	48
TspDTI	ATGAA	2 cut(s)	108, 167
XmnI	GAANNNNTTC	1 cut(s)	99

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.