Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0017419

Physical Location & Seq

Genomic Coordinates Reverse (-)

11810827 .. 11835305

Gene Structure 24479 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG077100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGGGTCTCTTTGCTAAATGCATTAGTGAAATGCGGCAAATTAGGCGGCTTTCAAAGGCTCCTCAAGCTGCAGGGACCATCCATACTGATTTTGAGAGAGGATTCATTTGTGCTGAGGTGTGGATACGCCGATTACACATACCCTGTTCACTTATCTGCTTTTGGGTGCTAATTCTTACATGGATCTTCCTTGGCGCTCGATATTCCCTATGGCAATTGTTTGGTGCAGCCTTCTGTGTGGTTGGGCTTAGCATAGTGCTCCTCTCTGATGTAGGGGTGGCTGGTAGAGATAATGGGGGATTCAAAGGCTGTCTCAACACCAACAAAGAAGAGTTCAAAGTCGCACAAAGTACGGAAGTCGAAGTCTTCAAAGACCAAGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SLC35F

Protein Analysis

127

Amino Acids

14.22

Weight (kDa)

8.61

Isoelectric Point (pI)

26.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
YchF-GTPase_C	PF06071	13 - 41	2.8e-09	Protein of unknown function (DUF933)
SLC35F	PF06027	55 - 101	8.9e-09	Solute carrier family 35

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0017419)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0113531 RchiOBHm_Chr2g0171981 RchiOBHm_Chr2g0172081 RchiOBHm_Chr6g0290101
rosa_laevigata	RLG00000001897
rosa_roxburghii	Rroxscaffold_1G00002340
rosa_samantha	Rh2AG413300 Rh4CG190800 Rh6AG366900 Rh6BG077100 Rh6CG333400 Rh7AG247600 Rh7CG388400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	34, 46
AclWI	GGATC	1 cut(s)	191
AfaI	GTAC	1 cut(s)	352
AgsI	TTSAA	4 cut(s)	54, 304, 337, 370
AluBI	AGCT	1 cut(s)	68
AluI	AGCT	1 cut(s)	68
Alw21I	GWGCWC	1 cut(s)	261
Alw26I	GTCTC	2 cut(s)	11, 317
AlwI	GGATC	1 cut(s)	191
ApeKI	GCWGC	2 cut(s)	68, 227
AspLEI	GCGC	1 cut(s)	197
AspS9I	GGNCC	1 cut(s)	75
AvaII	GGWCC	1 cut(s)	75
BbsI	GAAGAC	1 cut(s)	358
Bbv12I	GWGCWC	1 cut(s)	261
BbvCI	CCTCAGC	1 cut(s)	114
BbvI	GCAGC	2 cut(s)	55, 239
BccI	CCATC	1 cut(s)	86
BciVI	GTATCC	1 cut(s)	117
BcoDI	GTCTC	2 cut(s)	11, 317
BfmI	CTRYAG	1 cut(s)	69
BfoI	RGCGCY	1 cut(s)	198
BfuI	GTATCC	1 cut(s)	117
BisI	GCNGC	4 cut(s)	35, 47, 69, 228
BlpI	GCTNAGC	1 cut(s)	248
BlsI	GCNGC	4 cut(s)	36, 48, 70, 229
Bme18I	GGWCC	1 cut(s)	75
BmgT120I	GGNCC	1 cut(s)	75
BmiI	GGNNCC	2 cut(s)	60, 76
BpiI	GAAGAC	1 cut(s)	358
Bpu10I	CCTNAGC	1 cut(s)	114
Bpu1102I	GCTNAGC	1 cut(s)	248
BpuEI	CTTGAG	1 cut(s)	48
BsaI	GGTCTC	1 cut(s)	11
BsaJI	CCNNGG	2 cut(s)	190, 376
BseDI	CCNNGG	2 cut(s)	190, 376
BseGI	GGATG	1 cut(s)	78
BseMII	CTCAG	1 cut(s)	105
BseRI	GAGGAG	2 cut(s)	51, 251
BseXI	GCAGC	2 cut(s)	55, 239
BsgI	GTGCAG	1 cut(s)	246
BsiHKAI	GWGCWC	1 cut(s)	261
BslFI	GGGAC	1 cut(s)	88
BsmAI	GTCTC	2 cut(s)	11, 317
BsmFI	GGGAC	1 cut(s)	88
Bso31I	GGTCTC	1 cut(s)	11
Bsp1286I	GDGCHC	1 cut(s)	261
Bsp143I	GATC	1 cut(s)	183
Bsp1720I	GCTNAGC	1 cut(s)	248
BspACI	CCGC	2 cut(s)	34, 46
BspCNI	CTCAG	1 cut(s)	106
BspLI	GGNNCC	2 cut(s)	60, 76
BspMAI	CTGCAG	1 cut(s)	73
BspPI	GGATC	1 cut(s)	191
BspTNI	GGTCTC	1 cut(s)	11
BssECI	CCNNGG	2 cut(s)	190, 376
BssMI	GATC	1 cut(s)	183
BssT1I	CCWWGG	2 cut(s)	190, 376
Bst6I	CTCTTC	1 cut(s)	324
BstDEI	CTNAG	2 cut(s)	114, 248
BstF5I	GGATG	1 cut(s)	78
BstH2I	RGCGCY	1 cut(s)	198
BstHHI	GCGC	1 cut(s)	197
BstKTI	GATC	1 cut(s)	186
BstMAI	GTCTC	2 cut(s)	11, 317
BstMBI	GATC	1 cut(s)	183
BstMWI	GCNNNNNNNGC	2 cut(s)	43, 65
BstSFI	CTRYAG	1 cut(s)	69
BstV1I	GCAGC	2 cut(s)	55, 239
BstV2I	GAAGAC	1 cut(s)	358
BstX2I	RGATCY	1 cut(s)	183
BstYI	RGATCY	1 cut(s)	183
BsuI	GTATCC	1 cut(s)	117
BtsCI	GGATG	1 cut(s)	78
CfoI	GCGC	1 cut(s)	197
Cfr13I	GGNCC	1 cut(s)	75
Csp6I	GTAC	1 cut(s)	351
CviAII	CATG	1 cut(s)	180
CviJI	RGCY	7 cut(s)	49, 59, 68, 230, 247, 281, 309
CviKI_1	RGCY	7 cut(s)	49, 59, 68, 230, 247, 281, 309
CviQI	GTAC	1 cut(s)	351
DdeI	CTNAG	2 cut(s)	114, 248
DpnI	GATC	1 cut(s)	185
DpnII	GATC	1 cut(s)	183
Eam1104I	CTCTTC	1 cut(s)	324
EarI	CTCTTC	1 cut(s)	324
Eco130I	CCWWGG	2 cut(s)	190, 376
Eco31I	GGTCTC	1 cut(s)	11
Eco47I	GGWCC	1 cut(s)	75
EcoT14I	CCWWGG	2 cut(s)	190, 376
EcoT22I	ATGCAT	1 cut(s)	23
ErhI	CCWWGG	2 cut(s)	190, 376
FaeI	CATG	1 cut(s)	183
FaiI	YATR	5 cut(s)	84, 140, 181, 211, 254
FaqI	GGGAC	1 cut(s)	88
FatI	CATG	1 cut(s)	179
Fnu4HI	GCNGC	4 cut(s)	35, 47, 69, 228
FokI	GGATG	1 cut(s)	65
Fsp4HI	GCNGC	4 cut(s)	35, 47, 69, 228
GlaI	GCGC	1 cut(s)	196
GluI	GCNGC	4 cut(s)	35, 47, 69, 228
HaeII	RGCGCY	1 cut(s)	198
HhaI	GCGC	1 cut(s)	197
Hin1II	CATG	1 cut(s)	183
Hin6I	GCGC	1 cut(s)	195
HinP1I	GCGC	1 cut(s)	195
HinfI	GANTC	2 cut(s)	102, 300
Hpy166II	GTNNAC	1 cut(s)	149
Hpy188I	TCNGA	1 cut(s)	268
Hpy8I	GTNNAC	1 cut(s)	149
HpyAV	CCTTC	1 cut(s)	241
HpyCH4V	TGCA	3 cut(s)	21, 71, 227
HpyF10VI	GCNNNNNNNGC	2 cut(s)	43, 65
HpyF3I	CTNAG	2 cut(s)	114, 248
Hsp92II	CATG	1 cut(s)	183
HspAI	GCGC	1 cut(s)	195
Kzo9I	GATC	1 cut(s)	183
LmnI	GCTCC	2 cut(s)	64, 264
LpnPI	CCDG	3 cut(s)	57, 157, 267
Lsp1109I	GCAGC	2 cut(s)	55, 239
MalI	GATC	1 cut(s)	185
MboI	GATC	1 cut(s)	183
MboII	GAAGA	3 cut(s)	178, 341, 358
MfeI	CAATTG	1 cut(s)	215
MflI	RGATCY	1 cut(s)	183
MhlI	GDGCHC	1 cut(s)	261
MluCI	AATT	3 cut(s)	39, 171, 215
MnlI	CCTC	4 cut(s)	72, 92, 109, 272
Mph1103I	ATGCAT	1 cut(s)	23
MunI	CAATTG	1 cut(s)	215
MwoI	GCNNNNNNNGC	2 cut(s)	43, 65
NdeII	GATC	1 cut(s)	183
NlaIII	CATG	1 cut(s)	183
NlaIV	GGNNCC	2 cut(s)	60, 76
NsiI	ATGCAT	1 cut(s)	23
PfeI	GAWTC	2 cut(s)	102, 300
PkrI	GCNGC	4 cut(s)	36, 48, 70, 229
PspN4I	GGNNCC	2 cut(s)	60, 76
PspPI	GGNCC	1 cut(s)	75
PstI	CTGCAG	1 cut(s)	73
PsuI	RGATCY	1 cut(s)	183
RsaI	GTAC	1 cut(s)	352
RsaNI	GTAC	1 cut(s)	351
SatI	GCNGC	4 cut(s)	35, 47, 69, 228
Sau3AI	GATC	1 cut(s)	183
Sau96I	GGNCC	1 cut(s)	75
SduI	GDGCHC	1 cut(s)	261
SetI	ASST	2 cut(s)	70, 120
SfcI	CTRYAG	1 cut(s)	69
SgeI	CNNG	7 cut(s)	77, 84, 156, 192, 203, 210, 294
SinI	GGWCC	1 cut(s)	75
SmlI	CTYRAG	1 cut(s)	63
SmoI	CTYRAG	1 cut(s)	63
Sse9I	AATT	3 cut(s)	39, 171, 215
SsiI	CCGC	2 cut(s)	34, 46
StyI	CCWWGG	2 cut(s)	190, 376
TaqI	TCGA	2 cut(s)	199, 360
TasI	AATT	3 cut(s)	39, 171, 215
TauI	GCSGC	2 cut(s)	37, 49
TfiI	GAWTC	2 cut(s)	102, 300
TseI	GCWGC	2 cut(s)	68, 227
TspDTI	ATGAA	1 cut(s)	94
TspGWI	ACGGA	1 cut(s)	368
VpaK11BI	GGWCC	1 cut(s)	75
Zsp2I	ATGCAT	1 cut(s)	23

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.