Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0017419

Physical Location & Seq

Genomic Coordinates Reverse (-)

61367520 .. 61395422

Gene Structure 27903 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG413300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGGTTCGTCAACACCATCAACATCGTTCTCGGCAGACGCTTTAGTCGAGTATAGGCCTGGCCAGATCAGAAGAGTCTCCCGCATCCCCAATGAACATCTTCGCACAAAGAATCAAGGGGAGGATGCTTTCAAGCCTGATATTTATGGGGATGTGATAATCATAGAGCGCAAGATTTCTGGAGCTTCAAACGCCACTGTTTTGAAGGATCATCAAGATTATACAAATATGCAGTTGAGGCATAGAAAGCAGTTGAGTGGCTTGATGATTCTGGGGAAAATTGTGGCACCCAAAAATCCAGATGAATGGAAAGGGTGTGTAGAATCTTGGTTATCTTTTGGAAATTTGAGCAACCTCATAATAAATGGAACGGGAGAAATTAATGGCCAAGGTTCACTTTGGTGGAGCAATATTACCACCCAACCTAACAAAGTGATCAAGGTCAACTGCGCACGACCAAAGATCGAAAATGCAAATGACGATGGTGATGATGACTGGGACTATGTAGAAGAGAGACCTACTGAAATCACCTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_28

Protein Analysis

178

Amino Acids

20.04

Weight (kDa)

5.64

Isoelectric Point (pI)

27.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0017419)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0113531 RchiOBHm_Chr2g0171981 RchiOBHm_Chr2g0172081 RchiOBHm_Chr6g0290101
rosa_laevigata	RLG00000001897
rosa_roxburghii	Rroxscaffold_1G00002340
rosa_samantha	Rh2AG413300 Rh4CG190800 Rh6AG366900 Rh6BG077100 Rh6CG333400 Rh7AG247600 Rh7CG388400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	44
Acc16I	TGCGCA	1 cut(s)	451
AccB1I	GGYRCC	1 cut(s)	286
AciI	CCGC	1 cut(s)	82
AclWI	GGATC	1 cut(s)	216
AcoI	YGGCCR	2 cut(s)	61, 385
AcsI	RAATTY	1 cut(s)	343
AgsI	TTSAA	3 cut(s)	133, 189, 205
AjnI	CCWGG	2 cut(s)	58, 530
AleI	CACNNNNGTG	1 cut(s)	400
AluBI	AGCT	1 cut(s)	185
AluI	AGCT	1 cut(s)	185
Alw26I	GTCTC	2 cut(s)	82, 508
AlwI	GGATC	1 cut(s)	216
AoxI	GGCC	3 cut(s)	56, 61, 385
ApoI	RAATTY	1 cut(s)	343
AseI	ATTAAT	1 cut(s)	381
Asp700I	GAANNNNTTC	1 cut(s)	99
AspLEI	GCGC	2 cut(s)	171, 452
AsuHPI	GGTGA	2 cut(s)	497, 520
BalI	TGGCCA	2 cut(s)	63, 387
BanI	GGYRCC	1 cut(s)	286
BccI	CCATC	2 cut(s)	25, 476
BciT130I	CCWGG	2 cut(s)	60, 532
BclI	TGATCA	1 cut(s)	435
BcoDI	GTCTC	2 cut(s)	82, 508
Bme1390I	CCNGG	2 cut(s)	60, 532
BmiI	GGNNCC	1 cut(s)	288
BmrFI	CCNGG	2 cut(s)	60, 532
BmrI	ACTGGG	1 cut(s)	505
BmsI	GCATC	2 cut(s)	93, 115
BmuI	ACTGGG	1 cut(s)	505
BpmI	CTGGAG	1 cut(s)	201
BsaI	GGTCTC	1 cut(s)	508
BsaJI	CCNNGG	1 cut(s)	388
Bse1I	ACTGG	1 cut(s)	500
BseBI	CCWGG	2 cut(s)	60, 532
BseDI	CCNNGG	1 cut(s)	388
BseGI	GGATG	3 cut(s)	84, 130, 157
BseNI	ACTGG	1 cut(s)	500
BshFI	GGCC	3 cut(s)	58, 63, 387
BshNI	GGYRCC	1 cut(s)	286
BslFI	GGGAC	1 cut(s)	512
BsmAI	GTCTC	2 cut(s)	82, 508
BsmFI	GGGAC	1 cut(s)	512
BsnI	GGCC	3 cut(s)	58, 63, 387
Bso31I	GGTCTC	1 cut(s)	508
Bsp143I	GATC	4 cut(s)	66, 208, 435, 462
BspACI	CCGC	1 cut(s)	82
BspANI	GGCC	3 cut(s)	58, 63, 387
BspLI	GGNNCC	1 cut(s)	288
BspPI	GGATC	1 cut(s)	216
BspT107I	GGYRCC	1 cut(s)	286
BspTNI	GGTCTC	1 cut(s)	508
BsrI	ACTGG	1 cut(s)	500
BssECI	CCNNGG	1 cut(s)	388
BssMI	GATC	4 cut(s)	66, 208, 435, 462
BssT1I	CCWWGG	1 cut(s)	388
Bst2UI	CCWGG	2 cut(s)	60, 532
Bst4CI	ACNGT	1 cut(s)	199
Bst6I	CTCTTC	2 cut(s)	67, 504
BstF5I	GGATG	3 cut(s)	84, 130, 157
BstHHI	GCGC	2 cut(s)	171, 452
BstKTI	GATC	4 cut(s)	69, 211, 438, 465
BstMAI	GTCTC	2 cut(s)	82, 508
BstMBI	GATC	4 cut(s)	66, 208, 435, 462
BstMWI	GCNNNNNNNGC	3 cut(s)	191, 238, 247
BstNI	CCWGG	2 cut(s)	60, 532
BstSCI	CCNGG	2 cut(s)	58, 530
BstXI	CCANNNNNNTGG	1 cut(s)	306
BsuRI	GGCC	3 cut(s)	58, 63, 387
BtsCI	GGATG	3 cut(s)	84, 130, 157
BtsIMutI	CAGTG	1 cut(s)	195
CfoI	GCGC	2 cut(s)	171, 452
CseI	GACGC	1 cut(s)	47
CsiI	ACCWGGT	1 cut(s)	530
CviJI	RGCY	6 cut(s)	58, 63, 136, 185, 261, 387
CviKI_1	RGCY	6 cut(s)	58, 63, 136, 185, 261, 387
DpnI	GATC	4 cut(s)	68, 210, 437, 464
DpnII	GATC	4 cut(s)	66, 208, 435, 462
DrdI	GACNNNNNNGTC	1 cut(s)	44
DseDI	GACNNNNNNGTC	1 cut(s)	44
EaeI	YGGCCR	2 cut(s)	61, 385
Eam1104I	CTCTTC	2 cut(s)	67, 504
EarI	CTCTTC	2 cut(s)	67, 504
Eco130I	CCWWGG	1 cut(s)	388
Eco147I	AGGCCT	1 cut(s)	58
Eco31I	GGTCTC	1 cut(s)	508
EcoRII	CCWGG	2 cut(s)	58, 530
EcoT14I	CCWWGG	1 cut(s)	388
ErhI	CCWWGG	1 cut(s)	388
FaiI	YATR	8 cut(s)	54, 147, 164, 222, 230, 243, 359, 504
FalI	AAGNNNNNCTT	2 cut(s)	381, 413
FaqI	GGGAC	1 cut(s)	512
FauI	CCCGC	1 cut(s)	89
FbaI	TGATCA	1 cut(s)	435
FokI	GGATG	3 cut(s)	71, 137, 164
FspI	TGCGCA	1 cut(s)	451
GlaI	GCGC	2 cut(s)	170, 451
GsuI	CTGGAG	1 cut(s)	201
HaeIII	GGCC	3 cut(s)	58, 63, 387
HgaI	GACGC	1 cut(s)	47
HhaI	GCGC	2 cut(s)	171, 452
Hin6I	GCGC	2 cut(s)	169, 450
HinP1I	GCGC	2 cut(s)	169, 450
HincII	GTYRAC	2 cut(s)	12, 445
HindII	GTYRAC	2 cut(s)	12, 445
HinfI	GANTC	4 cut(s)	75, 112, 268, 323
HphI	GGTGA	2 cut(s)	497, 520
Hpy166II	GTNNAC	3 cut(s)	12, 395, 445
Hpy188I	TCNGA	1 cut(s)	71
Hpy188III	TCNNGA	3 cut(s)	180, 215, 299
Hpy8I	GTNNAC	3 cut(s)	12, 395, 445
HpyAV	CCTTC	1 cut(s)	199
HpyCH4III	ACNGT	1 cut(s)	199
HpyCH4V	TGCA	2 cut(s)	232, 473
HpyF10VI	GCNNNNNNNGC	3 cut(s)	191, 238, 247
HspAI	GCGC	2 cut(s)	169, 450
Ksp22I	TGATCA	1 cut(s)	435
Kzo9I	GATC	4 cut(s)	66, 208, 435, 462
LmnI	GCTCC	2 cut(s)	182, 405
LpnPI	CCDG	9 cut(s)	45, 72, 77, 150, 165, 257, 312, 481, 517
LweI	GCATC	2 cut(s)	93, 115
MabI	ACCWGGT	1 cut(s)	530
MalI	GATC	4 cut(s)	68, 210, 437, 464
MboI	GATC	4 cut(s)	66, 208, 435, 462
MboII	GAAGA	3 cut(s)	84, 92, 521
MlsI	TGGCCA	2 cut(s)	63, 387
MluCI	AATT	3 cut(s)	279, 343, 378
MluNI	TGGCCA	2 cut(s)	63, 387
MlyI	GAGTC	1 cut(s)	84
MnlI	CCTC	3 cut(s)	115, 231, 365
Mox20I	TGGCCA	2 cut(s)	63, 387
MroXI	GAANNNNTTC	1 cut(s)	99
MscI	TGGCCA	2 cut(s)	63, 387
MseI	TTAA	1 cut(s)	381
MslI	CAYNNNNRTG	1 cut(s)	400
Msp20I	TGGCCA	2 cut(s)	63, 387
MspR9I	CCNGG	2 cut(s)	60, 532
MvaI	CCWGG	2 cut(s)	60, 532
MwoI	GCNNNNNNNGC	3 cut(s)	191, 238, 247
NdeII	GATC	4 cut(s)	66, 208, 435, 462
NlaIV	GGNNCC	1 cut(s)	288
NmeAIII	GCCGAG	1 cut(s)	11
NsbI	TGCGCA	1 cut(s)	451
OliI	CACNNNNGTG	1 cut(s)	400
PceI	AGGCCT	1 cut(s)	58
PcsI	WCGNNNNNNNCGW	1 cut(s)	45
PdmI	GAANNNNTTC	1 cut(s)	99
PfeI	GAWTC	3 cut(s)	112, 268, 323
PleI	GAGTC	1 cut(s)	83
PpsI	GAGTC	1 cut(s)	83
PshBI	ATTAAT	1 cut(s)	381
Psp6I	CCWGG	2 cut(s)	58, 530
PspGI	CCWGG	2 cut(s)	58, 530
PspN4I	GGNNCC	1 cut(s)	288
RseI	CAYNNNNRTG	1 cut(s)	400
SaqAI	TTAA	1 cut(s)	381
Sau3AI	GATC	4 cut(s)	66, 208, 435, 462
SchI	GAGTC	1 cut(s)	84
ScrFI	CCNGG	2 cut(s)	60, 532
SetI	ASST	7 cut(s)	187, 357, 394, 427, 444, 520, 533
SexAI	ACCWGGT	1 cut(s)	530
SfaNI	GCATC	2 cut(s)	93, 115
SmiMI	CAYNNNNRTG	1 cut(s)	400
Sse9I	AATT	3 cut(s)	279, 343, 378
SseBI	AGGCCT	1 cut(s)	58
SsiI	CCGC	1 cut(s)	82
SspI	AATATT	1 cut(s)	412
StuI	AGGCCT	1 cut(s)	58
StyD4I	CCNGG	2 cut(s)	58, 530
StyI	CCWWGG	1 cut(s)	388
TaaI	ACNGT	1 cut(s)	199
TaqI	TCGA	2 cut(s)	48, 465
TasI	AATT	3 cut(s)	279, 343, 378
TfiI	GAWTC	3 cut(s)	112, 268, 323
Tru1I	TTAA	1 cut(s)	381
Tru9I	TTAA	1 cut(s)	381
TscAI	CASTG	1 cut(s)	202
TspDTI	ATGAA	2 cut(s)	108, 318
TspRI	CASTG	1 cut(s)	202
VspI	ATTAAT	1 cut(s)	381
XapI	RAATTY	1 cut(s)	343
XmnI	GAANNNNTTC	1 cut(s)	99

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.