Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0017419

Physical Location & Seq

Genomic Coordinates Forward (+)

52210360 .. 52212010

Gene Structure 1651 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG333400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 198 bp

ATGGGTTCGTCAACACCATCAACATCGTTCTCGGCCGACGCTTTAGTCGAGTATAGGCCTGGCCAGATCAGAAGAGTCTCCCGCATCCCCAATGAACATCTTCGCACAAAGGCCATCCTGCCACCAGATCTTGAAGAGAACCTGAGGCTGAGATGTAAGGGCAGTAGGGCCACCATTCATGCACTTCGGCTCCGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003954 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0006950 GO:0006970 GO:0008137 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009628 GO:0009631 GO:0016020 GO:0016491 GO:0016651 GO:0016655 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0046872 GO:0046914 GO:0050136 GO:0050896 GO:0050897 GO:0055114 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

ETC_C1_NDUFA4

Protein Analysis

65

Amino Acids

7.34

Weight (kDa)

11.14

Isoelectric Point (pI)

56.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017419)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0113531 RchiOBHm_Chr2g0171981 RchiOBHm_Chr2g0172081 RchiOBHm_Chr6g0290101
rosa_laevigata	RLG00000001897
rosa_roxburghii	Rroxscaffold_1G00002340
rosa_samantha	Rh2AG413300 Rh4CG190800 Rh6AG366900 Rh6BG077100 Rh6CG333400 Rh7AG247600 Rh7CG388400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	44
AciI	CCGC	1 cut(s)	82
AcoI	YGGCCR	2 cut(s)	33, 61
AgsI	TTSAA	1 cut(s)	134
AjnI	CCWGG	1 cut(s)	58
Alw26I	GTCTC	1 cut(s)	82
AoxI	GGCC	5 cut(s)	33, 56, 61, 111, 168
Asp700I	GAANNNNTTC	1 cut(s)	99
AspS9I	GGNCC	1 cut(s)	168
AxyI	CCTNAGG	1 cut(s)	143
BalI	TGGCCA	1 cut(s)	63
BccI	CCATC	2 cut(s)	25, 122
BciT130I	CCWGG	1 cut(s)	60
BcoDI	GTCTC	1 cut(s)	82
BglII	AGATCT	1 cut(s)	127
Bme1390I	CCNGG	1 cut(s)	60
BmgT120I	GGNCC	1 cut(s)	168
BmiI	GGNNCC	1 cut(s)	191
BmrFI	CCNGG	1 cut(s)	60
BmsI	GCATC	1 cut(s)	93
BsaWI	WCCGGW	1 cut(s)	192
BsaXI	ACNNNNNCTCC	1 cut(s)	174
Bse21I	CCTNAGG	1 cut(s)	143
BseBI	CCWGG	1 cut(s)	60
BseGI	GGATG	2 cut(s)	84, 114
BseMII	CTCAG	2 cut(s)	134, 140
BseX3I	CGGCCG	1 cut(s)	33
Bsh1285I	CGRYCG	1 cut(s)	36
BshFI	GGCC	5 cut(s)	35, 58, 63, 113, 170
BsiEI	CGRYCG	1 cut(s)	36
BsiSI	CCGG	1 cut(s)	193
BsmAI	GTCTC	1 cut(s)	82
BsnI	GGCC	5 cut(s)	35, 58, 63, 113, 170
Bsp143I	GATC	2 cut(s)	66, 127
BspACI	CCGC	1 cut(s)	82
BspANI	GGCC	5 cut(s)	35, 58, 63, 113, 170
BspCNI	CTCAG	2 cut(s)	135, 141
BspLI	GGNNCC	1 cut(s)	191
BssMI	GATC	2 cut(s)	66, 127
Bst2UI	CCWGG	1 cut(s)	60
Bst6I	CTCTTC	2 cut(s)	67, 129
BstDEI	CTNAG	2 cut(s)	143, 149
BstF5I	GGATG	2 cut(s)	84, 114
BstKTI	GATC	2 cut(s)	69, 130
BstMAI	GTCTC	1 cut(s)	82
BstMBI	GATC	2 cut(s)	66, 127
BstMCI	CGRYCG	1 cut(s)	36
BstNI	CCWGG	1 cut(s)	60
BstSCI	CCNGG	1 cut(s)	58
BstX2I	RGATCY	1 cut(s)	127
BstYI	RGATCY	1 cut(s)	127
BstZI	CGGCCG	1 cut(s)	33
Bsu36I	CCTNAGG	1 cut(s)	143
BsuRI	GGCC	5 cut(s)	35, 58, 63, 113, 170
BtsCI	GGATG	2 cut(s)	84, 114
Cfr13I	GGNCC	1 cut(s)	168
CseI	GACGC	1 cut(s)	47
CviAII	CATG	1 cut(s)	179
CviJI	RGCY	7 cut(s)	35, 58, 63, 113, 148, 170, 190
CviKI_1	RGCY	7 cut(s)	35, 58, 63, 113, 148, 170, 190
DdeI	CTNAG	2 cut(s)	143, 149
DpnI	GATC	2 cut(s)	68, 129
DpnII	GATC	2 cut(s)	66, 127
DrdI	GACNNNNNNGTC	1 cut(s)	44
DseDI	GACNNNNNNGTC	1 cut(s)	44
EaeI	YGGCCR	2 cut(s)	33, 61
EagI	CGGCCG	1 cut(s)	33
Eam1104I	CTCTTC	2 cut(s)	67, 129
EarI	CTCTTC	2 cut(s)	67, 129
EclXI	CGGCCG	1 cut(s)	33
Eco147I	AGGCCT	1 cut(s)	58
Eco52I	CGGCCG	1 cut(s)	33
Eco81I	CCTNAGG	1 cut(s)	143
EcoRII	CCWGG	1 cut(s)	58
FaeI	CATG	1 cut(s)	182
FaiI	YATR	2 cut(s)	54, 180
FatI	CATG	1 cut(s)	178
FauI	CCCGC	1 cut(s)	89
FokI	GGATG	2 cut(s)	71, 101
HaeIII	GGCC	5 cut(s)	35, 58, 63, 113, 170
HapII	CCGG	1 cut(s)	193
HgaI	GACGC	1 cut(s)	47
Hin1II	CATG	1 cut(s)	182
HincII	GTYRAC	1 cut(s)	12
HindII	GTYRAC	1 cut(s)	12
HinfI	GANTC	1 cut(s)	75
HpaII	CCGG	1 cut(s)	193
Hpy166II	GTNNAC	1 cut(s)	12
Hpy188I	TCNGA	1 cut(s)	71
Hpy188III	TCNNGA	1 cut(s)	131
Hpy8I	GTNNAC	1 cut(s)	12
Hpy99I	CGWCG	1 cut(s)	41
HpyCH4V	TGCA	1 cut(s)	182
HpyF3I	CTNAG	2 cut(s)	143, 149
Hsp92II	CATG	1 cut(s)	182
Kzo9I	GATC	2 cut(s)	66, 127
LmnI	GCTCC	1 cut(s)	195
LpnPI	CCDG	6 cut(s)	45, 72, 77, 131, 138, 155
LweI	GCATC	1 cut(s)	93
MalI	GATC	2 cut(s)	68, 129
MboI	GATC	2 cut(s)	66, 127
MboII	GAAGA	3 cut(s)	84, 92, 146
MflI	RGATCY	1 cut(s)	127
MlsI	TGGCCA	1 cut(s)	63
MluNI	TGGCCA	1 cut(s)	63
MlyI	GAGTC	1 cut(s)	84
MnlI	CCTC	1 cut(s)	138
Mox20I	TGGCCA	1 cut(s)	63
MroXI	GAANNNNTTC	1 cut(s)	99
MscI	TGGCCA	1 cut(s)	63
Msp20I	TGGCCA	1 cut(s)	63
MspI	CCGG	1 cut(s)	193
MspR9I	CCNGG	1 cut(s)	60
MvaI	CCWGG	1 cut(s)	60
NdeII	GATC	2 cut(s)	66, 127
NlaIII	CATG	1 cut(s)	182
NlaIV	GGNNCC	1 cut(s)	191
NmeAIII	GCCGAG	1 cut(s)	11
PceI	AGGCCT	1 cut(s)	58
PcsI	WCGNNNNNNNCGW	1 cut(s)	45
PdmI	GAANNNNTTC	1 cut(s)	99
PleI	GAGTC	1 cut(s)	83
PpsI	GAGTC	1 cut(s)	83
Psp6I	CCWGG	1 cut(s)	58
PspGI	CCWGG	1 cut(s)	58
PspN4I	GGNNCC	1 cut(s)	191
PspPI	GGNCC	1 cut(s)	168
PsuI	RGATCY	1 cut(s)	127
Sau3AI	GATC	2 cut(s)	66, 127
Sau96I	GGNCC	1 cut(s)	168
SchI	GAGTC	1 cut(s)	84
ScrFI	CCNGG	1 cut(s)	60
SetI	ASST	1 cut(s)	144
SfaNI	GCATC	1 cut(s)	93
SseBI	AGGCCT	1 cut(s)	58
SsiI	CCGC	1 cut(s)	82
StuI	AGGCCT	1 cut(s)	58
StyD4I	CCNGG	1 cut(s)	58
TaqI	TCGA	1 cut(s)	48
TspDTI	ATGAA	2 cut(s)	108, 167
XmnI	GAANNNNTTC	1 cut(s)	99

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.