Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0017419

Physical Location & Seq

Genomic Coordinates Reverse (-)

85598058 .. 85598758

Gene Structure 701 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ53938

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGATGGACCAACTTCCACGTAAGCCTGACTTCATAGAAGACTGGGTCAAAATTGGCCAAGCTGCCAAGAACAAGGTGAAGGCACTACATGAAGGTGCTTCCTTCCCTGAACTATGCACTCACTGTGAAAAGGAGGCTGTGAACGTTTCCATTGGAAATCTGCTGAGCTATCCTTTTGTAAGAGACGGGTTGGTGAACAAGACCCTCGGATTAAAGGGGGGCTACTATGATTTTGTCAAAGGAAACTTTGAGTTGTGGGATGTTGATTTTGGTCTTTCTCCCGACTTCTCCGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004089 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009628 GO:0009814 GO:0009817 GO:0009941 GO:0009987 GO:0010033 GO:0010037 GO:0010119 GO:0010319 GO:0015979 GO:0016020 GO:0016829 GO:0016835 GO:0016836 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0034357 GO:0042221 GO:0042493 GO:0042651 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0048046 GO:0048519 GO:0048580 GO:0048581 GO:0050789 GO:0050793 GO:0050794 GO:0050832 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051704 GO:0051707 GO:0055035 GO:0065007 GO:0071944 GO:0072347 GO:0098542 GO:1901700 GO:2000026 GO:2000038 GO:2000122

KEGG Pathways

Metabolic & Signaling

ko00910 map00910

Pfam Domains

Protein Families

Pro_CA

Protein Analysis

98

Amino Acids

11.0

Weight (kDa)

5.25

Isoelectric Point (pI)

26.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_CA	PF00484	7 - 82	7.4e-08	Carbonic anhydrase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0017419)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0113531 RchiOBHm_Chr2g0171981 RchiOBHm_Chr2g0172081 RchiOBHm_Chr6g0290101
rosa_laevigata	RLG00000001897
rosa_roxburghii	Rroxscaffold_1G00002340
rosa_samantha	Rh2AG413300 Rh4CG190800 Rh6AG366900 Rh6BG077100 Rh6CG333400 Rh7AG247600 Rh7CG388400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	144
AcoI	YGGCCR	1 cut(s)	55
AluBI	AGCT	2 cut(s)	62, 168
AluI	AGCT	2 cut(s)	62, 168
Alw26I	GTCTC	1 cut(s)	177
AoxI	GGCC	1 cut(s)	55
ApeKI	GCWGC	1 cut(s)	62
AspS9I	GGNCC	1 cut(s)	7
AsuHPI	GGTGA	2 cut(s)	88, 205
AvaII	GGWCC	1 cut(s)	7
BalI	TGGCCA	1 cut(s)	57
BbsI	GAAGAC	1 cut(s)	45
BbvI	GCAGC	1 cut(s)	49
BcoDI	GTCTC	1 cut(s)	177
BisI	GCNGC	1 cut(s)	63
BlpI	GCTNAGC	1 cut(s)	164
BlsI	GCNGC	1 cut(s)	64
Bme18I	GGWCC	1 cut(s)	7
BmgT120I	GGNCC	1 cut(s)	7
BmrI	ACTGGG	1 cut(s)	52
BmuI	ACTGGG	1 cut(s)	52
BpiI	GAAGAC	1 cut(s)	45
Bpu1102I	GCTNAGC	1 cut(s)	164
BsaAI	YACGTR	1 cut(s)	20
BsaJI	CCNNGG	1 cut(s)	205
Bse1I	ACTGG	1 cut(s)	47
BseDI	CCNNGG	1 cut(s)	205
BseGI	GGATG	1 cut(s)	265
BseMII	CTCAG	1 cut(s)	155
BseNI	ACTGG	1 cut(s)	47
BseXI	GCAGC	1 cut(s)	49
BshFI	GGCC	1 cut(s)	57
BsmAI	GTCTC	1 cut(s)	177
BsmBI	CGTCTC	1 cut(s)	177
BsnI	GGCC	1 cut(s)	57
Bsp1720I	GCTNAGC	1 cut(s)	164
BspANI	GGCC	1 cut(s)	57
BspCNI	CTCAG	1 cut(s)	156
BsrI	ACTGG	1 cut(s)	47
BssECI	CCNNGG	1 cut(s)	205
Bst4CI	ACNGT	1 cut(s)	125
BstBAI	YACGTR	1 cut(s)	20
BstDEI	CTNAG	1 cut(s)	164
BstF5I	GGATG	1 cut(s)	265
BstMAI	GTCTC	1 cut(s)	177
BstV1I	GCAGC	1 cut(s)	49
BstV2I	GAAGAC	1 cut(s)	45
BsuRI	GGCC	1 cut(s)	57
BtsCI	GGATG	1 cut(s)	265
BtsIMutI	CAGTG	1 cut(s)	121
Cfr13I	GGNCC	1 cut(s)	7
CviAII	CATG	1 cut(s)	89
CviJI	RGCY	6 cut(s)	25, 57, 62, 137, 168, 222
CviKI_1	RGCY	6 cut(s)	25, 57, 62, 137, 168, 222
DdeI	CTNAG	1 cut(s)	164
EaeI	YGGCCR	1 cut(s)	55
Eco47I	GGWCC	1 cut(s)	7
Esp3I	CGTCTC	1 cut(s)	177
FaeI	CATG	1 cut(s)	92
FaiI	YATR	5 cut(s)	35, 90, 115, 228, 295
FalI	AAGNNNNNCTT	2 cut(s)	14, 46
FatI	CATG	1 cut(s)	88
Fnu4HI	GCNGC	1 cut(s)	63
FokI	GGATG	1 cut(s)	272
Fsp4HI	GCNGC	1 cut(s)	63
GluI	GCNGC	1 cut(s)	63
HaeIII	GGCC	1 cut(s)	57
Hin1II	CATG	1 cut(s)	92
HphI	GGTGA	2 cut(s)	88, 205
Hpy166II	GTNNAC	2 cut(s)	142, 196
Hpy188I	TCNGA	1 cut(s)	209
Hpy188III	TCNNGA	1 cut(s)	281
Hpy8I	GTNNAC	2 cut(s)	142, 196
HpyAV	CCTTC	3 cut(s)	73, 86, 112
HpyCH4III	ACNGT	1 cut(s)	125
HpyCH4IV	ACGT	2 cut(s)	19, 144
HpyCH4V	TGCA	1 cut(s)	117
HpyF3I	CTNAG	1 cut(s)	164
HpySE526I	ACGT	2 cut(s)	19, 144
Hsp92II	CATG	1 cut(s)	92
LpnPI	CCDG	3 cut(s)	28, 39, 120
Lsp1109I	GCAGC	1 cut(s)	49
MaeII	ACGT	2 cut(s)	19, 144
MboII	GAAGA	1 cut(s)	50
MlsI	TGGCCA	1 cut(s)	57
MluCI	AATT	1 cut(s)	51
MluNI	TGGCCA	1 cut(s)	57
MnlI	CCTC	2 cut(s)	127, 215
Mox20I	TGGCCA	1 cut(s)	57
MscI	TGGCCA	1 cut(s)	57
MseI	TTAA	1 cut(s)	212
MslI	CAYNNNNRTG	1 cut(s)	93
Msp20I	TGGCCA	1 cut(s)	57
NlaIII	CATG	1 cut(s)	92
PflFI	GACNNNGTC	1 cut(s)	44
PkrI	GCNGC	1 cut(s)	64
Ppu21I	YACGTR	1 cut(s)	20
Psp1406I	AACGTT	1 cut(s)	144
PspPI	GGNCC	1 cut(s)	7
PsyI	GACNNNGTC	1 cut(s)	44
RseI	CAYNNNNRTG	1 cut(s)	93
SaqAI	TTAA	1 cut(s)	212
SatI	GCNGC	1 cut(s)	63
Sau96I	GGNCC	1 cut(s)	7
SetI	ASST	6 cut(s)	22, 64, 78, 97, 147, 170
SinI	GGWCC	1 cut(s)	7
SmiMI	CAYNNNNRTG	1 cut(s)	93
Sse9I	AATT	1 cut(s)	51
TaaI	ACNGT	1 cut(s)	125
TaiI	ACGT	2 cut(s)	22, 147
TasI	AATT	1 cut(s)	51
Tru1I	TTAA	1 cut(s)	212
Tru9I	TTAA	1 cut(s)	212
TscAI	CASTG	1 cut(s)	128
TseI	GCWGC	1 cut(s)	62
TspDTI	ATGAA	2 cut(s)	22, 105
TspGWI	ACGGA	1 cut(s)	280
TspRI	CASTG	1 cut(s)	128
Tth111I	GACNNNGTC	1 cut(s)	44
VpaK11BI	GGWCC	1 cut(s)	7

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.