Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0017419

Physical Location & Seq

Genomic Coordinates Forward (+)

41055355 .. 41063431

Gene Structure 8077 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG190800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGATTCTCATTAAGAAGGCCATCCTGCCACCAGATCTTGAAGAGAACCTGAGGCTGAGATGCCCTGATCGAGATCAGAAGCGCACGCCTCCTCCGGCGCTTCACGGCGCCCATTTGTCGACGAATCCACCAATACGCCACTGTGCCCCCAACCTCCAGACGTCCAAGCCTGTGCCACCGCCACCTAAACCGAATCTAGACGAGATCTGGGATGCCGAACTAACAGATTCGACCCATCCCCTTCTGAACCCAAGCCTTTGTGTCTTGGGACCCGAAACCGCTCCACCAGTAGTCACCTACACCGCTAGGAAACCCTACAAACCTCCTCAACCTCCGTGGAAACCGAACGACTCTGACCTGATGCACAAGAGGTCGATGTCCCAGCATTTCGACCACATCTCTGTCCCTGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

137

Amino Acids

15.33

Weight (kDa)

8.5

Isoelectric Point (pI)

70.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017419)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0113531 RchiOBHm_Chr2g0171981 RchiOBHm_Chr2g0172081 RchiOBHm_Chr6g0290101
rosa_laevigata	RLG00000001897
rosa_roxburghii	Rroxscaffold_1G00002340
rosa_samantha	Rh2AG413300 Rh4CG190800 Rh6AG366900 Rh6BG077100 Rh6CG333400 Rh7AG247600 Rh7CG388400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	164
AccB1I	GGYRCC	1 cut(s)	107
AccBSI	CCGCTC	1 cut(s)	281
AccI	GTMKAC	1 cut(s)	119
AciI	CCGC	3 cut(s)	179, 279, 303
AcyI	GRCGYC	2 cut(s)	108, 161
AgsI	TTSAA	1 cut(s)	41
AoxI	GGCC	1 cut(s)	18
AspLEI	GCGC	3 cut(s)	84, 100, 110
AspS9I	GGNCC	1 cut(s)	269
AsuHPI	GGTGA	1 cut(s)	286
AvaII	GGWCC	1 cut(s)	269
AxyI	CCTNAGG	1 cut(s)	50
BaeGI	GKGCMC	1 cut(s)	148
BanI	GGYRCC	1 cut(s)	107
BccI	CCATC	2 cut(s)	29, 243
BceAI	ACGGC	1 cut(s)	121
BfaI	CTAG	3 cut(s)	197, 306, 412
BfoI	RGCGCY	2 cut(s)	101, 111
BglII	AGATCT	2 cut(s)	34, 204
Bme18I	GGWCC	1 cut(s)	269
BmgT120I	GGNCC	1 cut(s)	269
BmiI	GGNNCC	3 cut(s)	109, 270, 271
BmsI	GCATC	3 cut(s)	50, 202, 351
BpmI	CTGGAG	1 cut(s)	140
BsaBI	GATNNNNATC	1 cut(s)	72
BsaHI	GRCGYC	2 cut(s)	108, 161
BsaJI	CCNNGG	1 cut(s)	335
BsaXI	ACNNNNNCTCC	2 cut(s)	76, 106
Bse1I	ACTGG	1 cut(s)	287
Bse21I	CCTNAGG	1 cut(s)	50
Bse8I	GATNNNNATC	1 cut(s)	72
BseDI	CCNNGG	1 cut(s)	335
BseGI	GGATG	3 cut(s)	21, 217, 235
BseJI	GATNNNNATC	1 cut(s)	72
BseMII	CTCAG	2 cut(s)	41, 47
BseNI	ACTGG	1 cut(s)	287
BseRI	GAGGAG	2 cut(s)	81, 315
BseSI	GKGCMC	1 cut(s)	148
BseYI	CCCAGC	1 cut(s)	381
BshFI	GGCC	1 cut(s)	20
BshNI	GGYRCC	1 cut(s)	107
BsiSI	CCGG	1 cut(s)	95
BslFI	GGGAC	3 cut(s)	282, 364, 389
BsmFI	GGGAC	3 cut(s)	282, 364, 389
BsnI	GGCC	1 cut(s)	20
Bsp1286I	GDGCHC	1 cut(s)	148
Bsp143I	GATC	4 cut(s)	34, 67, 73, 204
BspACI	CCGC	3 cut(s)	179, 279, 303
BspANI	GGCC	1 cut(s)	20
BspCNI	CTCAG	2 cut(s)	42, 48
BspLI	GGNNCC	3 cut(s)	109, 270, 271
BspT107I	GGYRCC	1 cut(s)	107
BsrBI	CCGCTC	1 cut(s)	281
BsrI	ACTGG	1 cut(s)	287
BssECI	CCNNGG	1 cut(s)	335
BssMI	GATC	4 cut(s)	34, 67, 73, 204
BssNI	GRCGYC	2 cut(s)	108, 161
Bst4CI	ACNGT	1 cut(s)	143
Bst6I	CTCTTC	1 cut(s)	36
BstACI	GRCGYC	2 cut(s)	108, 161
BstC8I	GCNNGC	1 cut(s)	86
BstDEI	CTNAG	2 cut(s)	50, 56
BstDSI	CCRYGG	1 cut(s)	335
BstF5I	GGATG	3 cut(s)	21, 217, 235
BstH2I	RGCGCY	2 cut(s)	101, 111
BstHHI	GCGC	3 cut(s)	84, 100, 110
BstKTI	GATC	4 cut(s)	37, 70, 76, 207
BstMBI	GATC	4 cut(s)	34, 67, 73, 204
BstSLI	GKGCMC	1 cut(s)	148
BstX2I	RGATCY	2 cut(s)	34, 204
BstYI	RGATCY	2 cut(s)	34, 204
Bsu36I	CCTNAGG	1 cut(s)	50
BsuRI	GGCC	1 cut(s)	20
BtgI	CCRYGG	1 cut(s)	335
BtsCI	GGATG	3 cut(s)	21, 217, 235
BtsIMutI	CAGTG	1 cut(s)	139
Cac8I	GCNNGC	1 cut(s)	86
CfoI	GCGC	3 cut(s)	84, 100, 110
Cfr13I	GGNCC	1 cut(s)	269
CspCI	CAANNNNNGTGG	2 cut(s)	317, 352
CviJI	RGCY	4 cut(s)	20, 55, 169, 255
CviKI_1	RGCY	4 cut(s)	20, 55, 169, 255
DdeI	CTNAG	2 cut(s)	50, 56
DinI	GGCGCC	1 cut(s)	109
DpnI	GATC	4 cut(s)	36, 69, 75, 206
DpnII	GATC	4 cut(s)	34, 67, 73, 204
Eam1104I	CTCTTC	1 cut(s)	36
EarI	CTCTTC	1 cut(s)	36
Eco47I	GGWCC	1 cut(s)	269
Eco81I	CCTNAGG	1 cut(s)	50
EcoO109I	RGGNCCY	1 cut(s)	269
EgeI	GGCGCC	1 cut(s)	109
EheI	GGCGCC	1 cut(s)	109
FaqI	GGGAC	3 cut(s)	282, 364, 389
FblI	GTMKAC	1 cut(s)	119
FokI	GGATG	3 cut(s)	8, 222, 224
FspBI	CTAG	3 cut(s)	197, 306, 412
GlaI	GCGC	3 cut(s)	83, 99, 109
GsaI	CCCAGC	1 cut(s)	385
GsuI	CTGGAG	1 cut(s)	140
HaeII	RGCGCY	2 cut(s)	101, 111
HaeIII	GGCC	1 cut(s)	20
HapII	CCGG	1 cut(s)	95
HhaI	GCGC	3 cut(s)	84, 100, 110
Hin1I	GRCGYC	2 cut(s)	108, 161
Hin6I	GCGC	3 cut(s)	82, 98, 108
HinP1I	GCGC	3 cut(s)	82, 98, 108
HincII	GTYRAC	1 cut(s)	120
HindII	GTYRAC	1 cut(s)	120
HinfI	GANTC	5 cut(s)	4, 124, 193, 227, 350
HpaII	CCGG	1 cut(s)	95
HphI	GGTGA	1 cut(s)	286
Hpy166II	GTNNAC	1 cut(s)	120
Hpy188I	TCNGA	3 cut(s)	78, 246, 355
Hpy188III	TCNNGA	4 cut(s)	38, 71, 157, 197
Hpy8I	GTNNAC	1 cut(s)	120
Hpy99I	CGWCG	1 cut(s)	124
HpyAV	CCTTC	2 cut(s)	10, 251
HpyCH4III	ACNGT	1 cut(s)	143
HpyCH4IV	ACGT	1 cut(s)	161
HpyCH4V	TGCA	1 cut(s)	364
HpyF3I	CTNAG	2 cut(s)	50, 56
HpySE526I	ACGT	1 cut(s)	161
Hsp92I	GRCGYC	2 cut(s)	108, 161
HspAI	GCGC	3 cut(s)	82, 98, 108
KasI	GGCGCC	1 cut(s)	107
KflI	GGGWCCC	1 cut(s)	269
Kzo9I	GATC	4 cut(s)	34, 67, 73, 204
LmnI	GCTCC	1 cut(s)	286
LweI	GCATC	3 cut(s)	50, 202, 351
MaeI	CTAG	3 cut(s)	197, 306, 412
MaeII	ACGT	1 cut(s)	161
MaeIII	GTNAC	1 cut(s)	292
MalI	GATC	4 cut(s)	36, 69, 75, 206
MbiI	CCGCTC	1 cut(s)	281
MboI	GATC	4 cut(s)	34, 67, 73, 204
MboII	GAAGA	1 cut(s)	53
MflI	RGATCY	2 cut(s)	34, 204
MhlI	GDGCHC	1 cut(s)	148
Mly113I	GGCGCC	1 cut(s)	108
MlyI	GAGTC	1 cut(s)	344
MnlI	CCTC	8 cut(s)	45, 99, 102, 164, 333, 336, 342, 363
MseI	TTAA	1 cut(s)	12
MspI	CCGG	1 cut(s)	95
NarI	GGCGCC	1 cut(s)	108
NdeII	GATC	4 cut(s)	34, 67, 73, 204
NlaIV	GGNNCC	3 cut(s)	109, 270, 271
NmuCI	GTSAC	1 cut(s)	292
PfeI	GAWTC	4 cut(s)	4, 124, 193, 227
PleI	GAGTC	1 cut(s)	344
PluTI	GGCGCC	1 cut(s)	111
PpsI	GAGTC	1 cut(s)	344
PpuMI	RGGWCCY	1 cut(s)	269
Psp5II	RGGWCCY	1 cut(s)	269
PspFI	CCCAGC	1 cut(s)	381
PspN4I	GGNNCC	3 cut(s)	109, 270, 271
PspPI	GGNCC	1 cut(s)	269
PspPPI	RGGWCCY	1 cut(s)	269
PsuI	RGATCY	2 cut(s)	34, 204
SalI	GTCGAC	1 cut(s)	118
SaqAI	TTAA	1 cut(s)	12
Sau3AI	GATC	4 cut(s)	34, 67, 73, 204
Sau96I	GGNCC	1 cut(s)	269
SchI	GAGTC	1 cut(s)	344
SduI	GDGCHC	1 cut(s)	148
SetI	ASST	9 cut(s)	51, 156, 164, 187, 299, 325, 334, 360, 374
SfaNI	GCATC	3 cut(s)	50, 202, 351
SfoI	GGCGCC	1 cut(s)	109
SinI	GGWCC	1 cut(s)	269
SsiI	CCGC	3 cut(s)	179, 279, 303
SspDI	GGCGCC	1 cut(s)	107
SspMI	CTAG	3 cut(s)	197, 306, 412
TaaI	ACNGT	1 cut(s)	143
TaiI	ACGT	1 cut(s)	164
TaqI	TCGA	5 cut(s)	70, 119, 230, 374, 390
TfiI	GAWTC	4 cut(s)	4, 124, 193, 227
Tru1I	TTAA	1 cut(s)	12
Tru9I	TTAA	1 cut(s)	12
TscAI	CASTG	1 cut(s)	146
TseFI	GTSAC	1 cut(s)	292
Tsp45I	GTSAC	1 cut(s)	292
TspGWI	ACGGA	1 cut(s)	324
TspRI	CASTG	1 cut(s)	146
VpaK11BI	GGWCC	1 cut(s)	269
XbaI	TCTAGA	1 cut(s)	196
XmiI	GTMKAC	1 cut(s)	119
XspI	CTAG	3 cut(s)	197, 306, 412
ZraI	GACGTC	1 cut(s)	162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.